RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	DEPDC5	O75140	1603 aa		22.1	■■□□□ 1.13
DDX39A-209	ENST00000589318	PPRC1	Q5VV67	1664 aa	Known RBP	22.09	■■□□□ 1.13
DDX39A-209	ENST00000589318	MLH3	Q9UHC1	1453 aa		22.08	■■□□□ 1.12
DDX39A-209	ENST00000589318	HECW2	Q9P2P5	1572 aa		22.07	■■□□□ 1.12
DDX39A-209	ENST00000589318	RICTOR	Q6R327	1708 aa		22.07	■■□□□ 1.12
DDX39A-209	ENST00000589318	TEX14	Q8IWB6	1497 aa		22.07	■■□□□ 1.12
DDX39A-209	ENST00000589318	EIF2AK4	Q9P2K8	1649 aa	Known RBP	22.07	■■□□□ 1.12
DDX39A-209	ENST00000589318	FAM69C	Q0P6D2	419 aa		22.07	■■□□□ 1.12
DDX39A-209	ENST00000589318	KIF13A	Q9H1H9	1805 aa		22.05	■■□□□ 1.12
DDX39A-209	ENST00000589318	DHX29	Q7Z478	1369 aa	Known RBP	22.05	■■□□□ 1.12
DDX39A-209	ENST00000589318	TSPOAP1	O95153	1857 aa		22.03	■■□□□ 1.12
DDX39A-209	ENST00000589318	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	22.03	■■□□□ 1.12	8e-8	■■■■□ 19.8
DDX39A-209	ENST00000589318	ABCA6	Q8N139	1617 aa		22.02	■■□□□ 1.12
DDX39A-209	ENST00000589318	MROH1	Q8NDA8	1641 aa		22.02	■■□□□ 1.12
DDX39A-209	ENST00000589318	L3MBTL2	Q969R5	705 aa		22.02	■■□□□ 1.11
DDX39A-209	ENST00000589318	FRMPD1	Q5SYB0	1578 aa		22.02	■■□□□ 1.11
DDX39A-209	ENST00000589318	VWDE	Q8N2E2	1590 aa		22.01	■■□□□ 1.11
DDX39A-209	ENST00000589318	RAPGEF3	O95398	923 aa		22	■■□□□ 1.11
DDX39A-209	ENST00000589318	MYT1L	Q9UL68	1186 aa		22	■■□□□ 1.11
DDX39A-209	ENST00000589318	A2M	P01023	1474 aa		21.99	■■□□□ 1.11
DDX39A-209	ENST00000589318	PRDM15	P57071	1507 aa	Predicted RBP	21.99	■■□□□ 1.11
DDX39A-209	ENST00000589318	PLA2R1	Q13018	1463 aa		21.98	■■□□□ 1.11
DDX39A-209	ENST00000589318	RNF17	Q9BXT8	1623 aa	Known RBP	21.96	■■□□□ 1.11
DDX39A-209	ENST00000589318		E9PCH4	1651 aa		21.96	■■□□□ 1.11
DDX39A-209	ENST00000589318	BCORL1	Q5H9F3	1711 aa		21.96	■■□□□ 1.11
DDX39A-209	ENST00000589318	DIP2C	Q9Y2E4	1556 aa		21.96	■■□□□ 1.11
DDX39A-209	ENST00000589318	TET3	O43151	1660 aa		21.95	■■□□□ 1.1
DDX39A-209	ENST00000589318	ATP10A	O60312	1499 aa		21.95	■■□□□ 1.1
DDX39A-209	ENST00000589318	KIF3B	O15066	747 aa		21.94	■■□□□ 1.1
DDX39A-209	ENST00000589318	ZMYM4	Q5VZL5	1548 aa		21.93	■■□□□ 1.1
DDX39A-209	ENST00000589318	YEATS2	Q9ULM3	1422 aa		21.89	■■□□□ 1.09
DDX39A-209	ENST00000589318	CCDC144A	A2RUR9	1427 aa		21.88	■■□□□ 1.09
DDX39A-209	ENST00000589318	NBPF8	Q3BBV2	869 aa		21.88	■■□□□ 1.09
DDX39A-209	ENST00000589318	KANK1	Q14678	1352 aa		21.88	■■□□□ 1.09
DDX39A-209	ENST00000589318	SPHKAP	Q2M3C7	1700 aa		21.87	■■□□□ 1.09
DDX39A-209	ENST00000589318	LMTK2	Q8IWU2	1503 aa		21.86	■■□□□ 1.09
DDX39A-209	ENST00000589318	CEP152	O94986	1710 aa		21.86	■■□□□ 1.09
DDX39A-209	ENST00000589318	PTPRT	O14522	1441 aa		21.84	■■□□□ 1.09
DDX39A-209	ENST00000589318	TRPM2	O94759	1503 aa		21.84	■■□□□ 1.09
DDX39A-209	ENST00000589318	EFCAB6	Q5THR3	1501 aa		21.84	■■□□□ 1.09
DDX39A-209	ENST00000589318	UHRF1BP1	Q6BDS2	1440 aa		21.81	■■□□□ 1.08
DDX39A-209	ENST00000589318	COL17A1	Q9UMD9	1497 aa	Predicted RBP	21.81	■■□□□ 1.08
DDX39A-209	ENST00000589318	CLTCL1	P53675	1640 aa		21.79	■■□□□ 1.08
DDX39A-209	ENST00000589318	HIRIP3	Q9BW71	556 aa	Predicted RBP	21.78	■■□□□ 1.08
DDX39A-209	ENST00000589318	ABCC3	O15438	1527 aa		21.77	■■□□□ 1.08
DDX39A-209	ENST00000589318	RERE	Q9P2R6	1566 aa		21.76	■■□□□ 1.07
DDX39A-209	ENST00000589318	SPATA31E1	Q6ZUB1	1445 aa		21.75	■■□□□ 1.07
DDX39A-209	ENST00000589318	GGT6	Q6P531	493 aa		21.74	■■□□□ 1.07
DDX39A-209	ENST00000589318	CAMSAP1	Q5T5Y3	1602 aa		21.73	■■□□□ 1.07
DDX39A-209	ENST00000589318	RALGAPB	Q86X10	1494 aa		21.73	■■□□□ 1.07
DDX39A-209	ENST00000589318	ZC3H13	Q5T200	1668 aa	Known RBP	21.72	■■□□□ 1.07
DDX39A-209	ENST00000589318	HSPA5	P11021	654 aa	Known RBP	21.72	■■□□□ 1.07
DDX39A-209	ENST00000589318	DCAF11	Q8TEB1	546 aa		21.72	■■□□□ 1.07
DDX39A-209	ENST00000589318	SIGLEC1	Q9BZZ2	1709 aa		21.72	■■□□□ 1.07
DDX39A-209	ENST00000589318	NPAT	Q14207	1427 aa		21.71	■■□□□ 1.07
DDX39A-209	ENST00000589318	ARHGEF40	Q8TER5	1519 aa		21.7	■■□□□ 1.06
DDX39A-209	ENST00000589318	NEURL4	Q96JN8	1562 aa		21.69	■■□□□ 1.06
DDX39A-209	ENST00000589318	UGGT1	Q9NYU2	1555 aa		21.69	■■□□□ 1.06
DDX39A-209	ENST00000589318	EIF4G2	P78344	907 aa	Known RBP eCLIP	21.69	■■□□□ 1.06
DDX39A-209	ENST00000589318	RGL3	Q3MIN7	710 aa		21.69	■■□□□ 1.06
DDX39A-209	ENST00000589318	AGL	P35573	1532 aa		21.69	■■□□□ 1.06
DDX39A-209	ENST00000589318	PRAG1	Q86YV5	1406 aa		21.69	■■□□□ 1.06
DDX39A-209	ENST00000589318	TRPM1	Q7Z4N2	1603 aa		21.68	■■□□□ 1.06
DDX39A-209	ENST00000589318	ZNF326	Q5BKZ1	582 aa	Known RBP	21.68	■■□□□ 1.06
DDX39A-209	ENST00000589318	KDM2A	Q9Y2K7	1162 aa		21.68	■■□□□ 1.06
DDX39A-209	ENST00000589318	WASHC2C	Q9Y4E1	1318 aa		21.68	■■□□□ 1.06
DDX39A-209	ENST00000589318	CFAP65	Q6ZU64	1925 aa	Known RBP	21.67	■■□□□ 1.06
DDX39A-209	ENST00000589318	MIER1	Q8N108	512 aa		21.65	■■□□□ 1.06
DDX39A-209	ENST00000589318	KIF1B	O60333	1816 aa		21.65	■■□□□ 1.06
DDX39A-209	ENST00000589318	ARHGAP31	Q2M1Z3	1444 aa		21.64	■■□□□ 1.05
DDX39A-209	ENST00000589318	MROH2A	A6NES4	1674 aa		21.62	■■□□□ 1.05
DDX39A-209	ENST00000589318	CNTLN	Q9NXG0	1405 aa		21.62	■■□□□ 1.05
DDX39A-209	ENST00000589318	NOS1	P29475	1434 aa		21.61	■■□□□ 1.05
DDX39A-209	ENST00000589318	POLR1A	O95602	1720 aa	Predicted RBP	21.6	■■□□□ 1.05
DDX39A-209	ENST00000589318	DDX10	Q13206	875 aa	Known RBP	21.6	■■□□□ 1.05
DDX39A-209	ENST00000589318	MADD	Q8WXG6	1647 aa		21.6	■■□□□ 1.05
DDX39A-209	ENST00000589318	USP47	Q96K76	1375 aa		21.59	■■□□□ 1.05
DDX39A-209	ENST00000589318	DNAJC5	Q9H3Z4	198 aa		21.59	■■□□□ 1.05
DDX39A-209	ENST00000589318	SYNM	O15061	1565 aa		21.59	■■□□□ 1.05
DDX39A-209	ENST00000589318	PIK3C2B	O00750	1634 aa		21.59	■■□□□ 1.05
DDX39A-209	ENST00000589318	ADGRB3	O60242	1522 aa		21.59	■■□□□ 1.05
DDX39A-209	ENST00000589318	IFT172	Q9UG01	1749 aa		21.58	■■□□□ 1.05
DDX39A-209	ENST00000589318	WASHC2A	Q641Q2	1341 aa		21.57	■■□□□ 1.04
DDX39A-209	ENST00000589318	LAMC1	P11047	1609 aa		21.57	■■□□□ 1.04
DDX39A-209	ENST00000589318	GPRASP1	Q5JY77	1395 aa		21.57	■■□□□ 1.04
DDX39A-209	ENST00000589318	PREX1	Q8TCU6	1659 aa		21.55	■■□□□ 1.04
DDX39A-209	ENST00000589318	C11orf95	C9JLR9	678 aa	Predicted RBP	21.55	■■□□□ 1.04
DDX39A-209	ENST00000589318	ROCK2	O75116	1388 aa	Known RBP	21.55	■■□□□ 1.04
DDX39A-209	ENST00000589318	CARD11	Q9BXL7	1154 aa		21.55	■■□□□ 1.04
DDX39A-209	ENST00000589318	CLTC	Q00610	1675 aa	Known RBP	21.53	■■□□□ 1.04
DDX39A-209	ENST00000589318	STAC3	Q96MF2	364 aa		21.53	■■□□□ 1.04
DDX39A-209	ENST00000589318	PPP6R1	Q9UPN7	881 aa		21.53	■■□□□ 1.04
DDX39A-209	ENST00000589318	NBPF1	Q3BBV0	1214 aa		21.52	■■□□□ 1.04
DDX39A-209	ENST00000589318	MYOM2	P54296	1465 aa		21.52	■■□□□ 1.03
DDX39A-209	ENST00000589318	CCDC7	Q96M83	1385 aa		21.51	■■□□□ 1.03
DDX39A-209	ENST00000589318	TRH	P20396	242 aa	Predicted RBP	21.49	■■□□□ 1.03
DDX39A-209	ENST00000589318	ANP32E	Q9BTT0	268 aa		21.49	■■□□□ 1.03
DDX39A-209	ENST00000589318	PPL	O60437	1756 aa		21.49	■■□□□ 1.03
DDX39A-209	ENST00000589318	KIAA1210	Q9ULL0	1709 aa		21.48	■■□□□ 1.03
DDX39A-209	ENST00000589318	NRXN1	Q9ULB1	1477 aa		21.47	■■□□□ 1.03

Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms