RNA–Protein interactions for RNA: ENST00000587730.5

DDX39A-206, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,813 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-206ENST00000587730 CARD11Q9BXL7 1154 aa25.12■■□□□ 1.61
DDX39A-206ENST00000587730 BRD4O60885 1362 aaPredicted RBP25.12■■□□□ 1.61
DDX39A-206ENST00000587730 RALBP1Q15311 655 aa25.12■■□□□ 1.61
DDX39A-206ENST00000587730 ZNF326Q5BKZ1 582 aaKnown RBP25.09■■□□□ 1.61
DDX39A-206ENST00000587730 TMC1Q8TDI8 760 aa25.08■■□□□ 1.61
DDX39A-206ENST00000587730 PNISRQ8TF01 805 aaKnown RBP25.08■■□□□ 1.61
DDX39A-206ENST00000587730 CCDC141Q6ZP82 1450 aa25.08■■□□□ 1.61
DDX39A-206ENST00000587730 MSH5O43196 834 aa25.07■■□□□ 1.6
DDX39A-206ENST00000587730 LRPPRCP42704 1394 aaKnown RBP25.06■■□□□ 1.6
DDX39A-206ENST00000587730 MYBBP1AQ9BQG0 1328 aaKnown RBP25.06■■□□□ 1.6
DDX39A-206ENST00000587730 B4GALNT3Q6L9W6 998 aa25.05■■□□□ 1.6
DDX39A-206ENST00000587730 E9PCH4 1651 aa25.02■■□□□ 1.6
DDX39A-206ENST00000587730 MAST1Q9Y2H9 1570 aa25.01■■□□□ 1.59
DDX39A-206ENST00000587730 POLR3GLQ9BT43 218 aa25.01■■□□□ 1.59
DDX39A-206ENST00000587730 PREX2Q70Z35 1606 aa25.01■■□□□ 1.59
DDX39A-206ENST00000587730 FAM135AQ9P2D6 1515 aa25.01■■□□□ 1.59
DDX39A-206ENST00000587730 INSRP06213 1382 aa25■■□□□ 1.59
DDX39A-206ENST00000587730 LAMC1P11047 1609 aa24.99■■□□□ 1.59
DDX39A-206ENST00000587730 TRHP20396 242 aaPredicted RBP24.99■■□□□ 1.59
DDX39A-206ENST00000587730 WASHC2CQ9Y4E1 1318 aa24.98■■□□□ 1.59
DDX39A-206ENST00000587730 CCDC144AA2RUR9 1427 aa24.97■■□□□ 1.59
DDX39A-206ENST00000587730 ZMYM4Q5VZL5 1548 aa24.96■■□□□ 1.59
DDX39A-206ENST00000587730 ST20-MTHFSA0A0A6YYL1 179 aa24.96■■□□□ 1.59
DDX39A-206ENST00000587730 GPRASP1Q5JY77 1395 aa24.96■■□□□ 1.59
DDX39A-206ENST00000587730 UNC13BO14795 1591 aa24.96■■□□□ 1.59
DDX39A-206ENST00000587730 PDE3BQ13370 1112 aa24.96■■□□□ 1.59
DDX39A-206ENST00000587730 DCAF11Q8TEB1 546 aa24.96■■□□□ 1.59
DDX39A-206ENST00000587730 PRAG1Q86YV5 1406 aa24.95■■□□□ 1.59
DDX39A-206ENST00000587730 PLEKHH2Q8IVE3 1493 aa24.95■■□□□ 1.59
DDX39A-206ENST00000587730 CCDC136Q96JN2 1154 aa24.95■■□□□ 1.58
DDX39A-206ENST00000587730 SAMD9LQ8IVG5 1584 aa24.95■■□□□ 1.58
DDX39A-206ENST00000587730 TRPM1Q7Z4N2 1603 aa24.93■■□□□ 1.58
DDX39A-206ENST00000587730 NLRP13Q86W25 1043 aa24.93■■□□□ 1.58
DDX39A-206ENST00000587730 EIF2AK4Q9P2K8 1649 aaKnown RBP24.91■■□□□ 1.58
DDX39A-206ENST00000587730 HNRNPMP52272 730 aaKnown RBP eCLIP24.91■■□□□ 1.582e-7■■□□□ 12.8
DDX39A-206ENST00000587730 PARD3Q8TEW0 1356 aa24.91■■□□□ 1.58
DDX39A-206ENST00000587730 PLXNC1O60486 1568 aa24.9■■□□□ 1.58
DDX39A-206ENST00000587730 SLC24A1O60721 1099 aa24.89■■□□□ 1.58
DDX39A-206ENST00000587730 KDM2AQ9Y2K7 1162 aa24.89■■□□□ 1.57
DDX39A-206ENST00000587730 CDC42BPBQ9Y5S2 1711 aa24.88■■□□□ 1.57
DDX39A-206ENST00000587730 ATP10AO60312 1499 aa24.87■■□□□ 1.57
DDX39A-206ENST00000587730 IQGAP3Q86VI3 1631 aa24.85■■□□□ 1.57
DDX39A-206ENST00000587730 COL17A1Q9UMD9 1497 aaPredicted RBP24.84■■□□□ 1.57
DDX39A-206ENST00000587730 PRDM15P57071 1507 aaPredicted RBP24.84■■□□□ 1.57
DDX39A-206ENST00000587730 ABCC2Q92887 1545 aa24.83■■□□□ 1.57
DDX39A-206ENST00000587730 DUOX2Q9NRD8 1548 aa24.81■■□□□ 1.56
DDX39A-206ENST00000587730 ARHGAP5Q13017 1502 aa24.81■■□□□ 1.56
DDX39A-206ENST00000587730 SYCP2Q9BX26 1530 aa24.81■■□□□ 1.56
DDX39A-206ENST00000587730 ERBINQ96RT1 1412 aa24.8■■□□□ 1.56
DDX39A-206ENST00000587730 ANP32AP39687 249 aaKnown RBP24.8■■□□□ 1.56
DDX39A-206ENST00000587730 NOP58Q9Y2X3 529 aaKnown RBP24.8■■□□□ 1.56
DDX39A-206ENST00000587730 MAGI2Q86UL8 1455 aa24.8■■□□□ 1.56
DDX39A-206ENST00000587730 RRP1P56182 461 aaKnown RBP24.79■■□□□ 1.56
DDX39A-206ENST00000587730 A2MP01023 1474 aa24.79■■□□□ 1.56
DDX39A-206ENST00000587730 PLA2R1Q13018 1463 aa24.78■■□□□ 1.56
DDX39A-206ENST00000587730 UHRF1BP1LA0JNW5 1464 aa24.77■■□□□ 1.56
DDX39A-206ENST00000587730 CNGB1Q14028 1251 aaPredicted RBP24.76■■□□□ 1.55
DDX39A-206ENST00000587730 RCAN3Q9UKA8 241 aa24.76■■□□□ 1.55
DDX39A-206ENST00000587730 PER1O15534 1290 aaPredicted RBP24.75■■□□□ 1.55
DDX39A-206ENST00000587730 STAC3Q96MF2 364 aa24.75■■□□□ 1.55
DDX39A-206ENST00000587730 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.74■■□□□ 1.55
DDX39A-206ENST00000587730 MYO5CQ9NQX4 1742 aa24.73■■□□□ 1.55
DDX39A-206ENST00000587730 TMF1P82094 1093 aa24.73■■□□□ 1.55
DDX39A-206ENST00000587730 BCL11AQ9H165 835 aa24.73■■□□□ 1.55
DDX39A-206ENST00000587730 BLMP54132 1417 aaPredicted RBP24.73■■□□□ 1.55
DDX39A-206ENST00000587730 TTC37Q6PGP7 1564 aa24.73■■□□□ 1.55
DDX39A-206ENST00000587730 TCERG1O14776 1098 aaKnown RBP24.72■■□□□ 1.55
DDX39A-206ENST00000587730 IPO9Q96P70 1041 aaKnown RBP24.7■■□□□ 1.55
DDX39A-206ENST00000587730 TESK2Q96S53 571 aa24.7■■□□□ 1.54
DDX39A-206ENST00000587730 ZCCHC11Q5TAX3 1644 aaKnown RBP24.69■■□□□ 1.54
DDX39A-206ENST00000587730 RNF17Q9BXT8 1623 aaKnown RBP24.68■■□□□ 1.54
DDX39A-206ENST00000587730 MS4A1P11836 297 aa24.68■■□□□ 1.54
DDX39A-206ENST00000587730 NBPF1Q3BBV0 1214 aa24.65■■□□□ 1.54
DDX39A-206ENST00000587730 CDCA8Q53HL2 280 aa24.65■■□□□ 1.54
DDX39A-206ENST00000587730 NPM1P06748 294 aaKnown RBP eCLIP24.64■■□□□ 1.54
DDX39A-206ENST00000587730 RGL3Q3MIN7 710 aa24.64■■□□□ 1.54
DDX39A-206ENST00000587730 DISP3Q9P2K9 1392 aa24.64■■□□□ 1.53
DDX39A-206ENST00000587730 PLCH2O75038 1416 aa24.63■■□□□ 1.53
DDX39A-206ENST00000587730 EFCAB2Q5VUJ9 269 aa24.61■■□□□ 1.53
DDX39A-206ENST00000587730 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.61■■□□□ 1.532e-6■■■■□ 23.1
DDX39A-206ENST00000587730 ZBTB47Q9UFB7 747 aaPredicted RBP24.61■■□□□ 1.53
DDX39A-206ENST00000587730 PANK3Q9H999 370 aa24.6■■□□□ 1.53
DDX39A-206ENST00000587730 RTEL1-TNFRSF6BF6WH68 1400 aa24.58■■□□□ 1.53
DDX39A-206ENST00000587730 ARAP3Q8WWN8 1544 aa24.58■■□□□ 1.53
DDX39A-206ENST00000587730 EXOC6Q8TAG9 804 aa24.58■■□□□ 1.53
DDX39A-206ENST00000587730 ABCC1P33527 1531 aa24.57■■□□□ 1.52
DDX39A-206ENST00000587730 SCAPERQ9BY12 1400 aa24.57■■□□□ 1.52
DDX39A-206ENST00000587730 TRPM2O94759 1503 aa24.55■■□□□ 1.52
DDX39A-206ENST00000587730 ASXL2Q76L83 1435 aa24.54■■□□□ 1.52
DDX39A-206ENST00000587730 MADDQ8WXG6 1647 aa24.54■■□□□ 1.52
DDX39A-206ENST00000587730 SYNMO15061 1565 aa24.53■■□□□ 1.52
DDX39A-206ENST00000587730 NEURL4Q96JN8 1562 aa24.53■■□□□ 1.52
DDX39A-206ENST00000587730 NPC1L1Q9UHC9 1359 aa24.53■■□□□ 1.52
DDX39A-206ENST00000587730 CC2D1BQ5T0F9 858 aaKnown RBP24.53■■□□□ 1.52
DDX39A-206ENST00000587730 IQGAP1P46940 1657 aa24.53■■□□□ 1.52
DDX39A-206ENST00000587730 EIF3AQ14152 1382 aaKnown RBP24.51■■□□□ 1.51
DDX39A-206ENST00000587730 SCAF11Q99590 1463 aaKnown RBP24.51■■□□□ 1.51
DDX39A-206ENST00000587730 WDR7Q9Y4E6 1490 aa24.51■■□□□ 1.51
DDX39A-206ENST00000587730 PTPRTO14522 1441 aa24.5■■□□□ 1.51
DDX39A-206ENST00000587730 KNSTRNQ9Y448 316 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms