RNA–Protein interactions for RNA: ENST00000586417.5

ATG4D-204, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 2

Gene ATG4D, Length 1,752 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-204ENST00000586417 REREQ9P2R6 1566 aa29.8■■■□□ 2.36
ATG4D-204ENST00000586417 TRIM52Q96A61 297 aa29.79■■■□□ 2.36
ATG4D-204ENST00000586417 SIN3AQ96ST3 1273 aa29.77■■■□□ 2.36
ATG4D-204ENST00000586417 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.76■■■□□ 2.35
ATG4D-204ENST00000586417 BCORL1Q5H9F3 1711 aa29.75■■■□□ 2.35
ATG4D-204ENST00000586417 UNC13BO14795 1591 aa29.74■■■□□ 2.35
ATG4D-204ENST00000586417 DEPDC5O75140 1603 aa29.74■■■□□ 2.35
ATG4D-204ENST00000586417 MPHOSPH9Q99550 1183 aa29.73■■■□□ 2.35
ATG4D-204ENST00000586417 MROH1Q8NDA8 1641 aa29.72■■■□□ 2.35
ATG4D-204ENST00000586417 AGLP35573 1532 aa29.72■■■□□ 2.35
ATG4D-204ENST00000586417 GGT6Q6P531 493 aa29.72■■■□□ 2.35
ATG4D-204ENST00000586417 NUP155O75694 1391 aa29.71■■■□□ 2.35
ATG4D-204ENST00000586417 RNF17Q9BXT8 1623 aaKnown RBP29.71■■■□□ 2.35
ATG4D-204ENST00000586417 PZPP20742 1482 aa29.7■■■□□ 2.34
ATG4D-204ENST00000586417 NEUROD1Q13562 356 aa29.67■■■□□ 2.34
ATG4D-204ENST00000586417 ARID4BQ4LE39 1312 aaPredicted RBP29.67■■■□□ 2.34
ATG4D-204ENST00000586417 PRDM15P57071 1507 aaPredicted RBP29.66■■■□□ 2.34
ATG4D-204ENST00000586417 TIMELESSQ9UNS1 1208 aa29.66■■■□□ 2.34
ATG4D-204ENST00000586417 MLECQ14165 292 aa29.65■■■□□ 2.34
ATG4D-204ENST00000586417 KDM5DQ9BY66 1539 aa29.65■■■□□ 2.34
ATG4D-204ENST00000586417 IQGAP3Q86VI3 1631 aa29.63■■■□□ 2.33
ATG4D-204ENST00000586417 FAM135AQ9P2D6 1515 aa29.63■■■□□ 2.33
ATG4D-204ENST00000586417 VWDEQ8N2E2 1590 aa29.62■■■□□ 2.33
ATG4D-204ENST00000586417 SLC4A1APQ9BWU0 796 aaKnown RBP29.61■■■□□ 2.33
ATG4D-204ENST00000586417 CEP152O94986 1710 aa29.58■■■□□ 2.33
ATG4D-204ENST00000586417 KANK1Q14678 1352 aa29.58■■■□□ 2.33
ATG4D-204ENST00000586417 ANKRD30BQ9BXX2 1392 aa29.56■■■□□ 2.32
ATG4D-204ENST00000586417 FOXD1Q16676 465 aa29.56■■■□□ 2.32
ATG4D-204ENST00000586417 WASHC2CQ9Y4E1 1318 aa29.55■■■□□ 2.32
ATG4D-204ENST00000586417 ZNF316A6NFI3 1004 aaPredicted RBP29.54■■■□□ 2.32
ATG4D-204ENST00000586417 ABCC3O15438 1527 aa29.54■■■□□ 2.32
ATG4D-204ENST00000586417 PKD2Q13563 968 aa29.53■■■□□ 2.32
ATG4D-204ENST00000586417 TONSLQ96HA7 1378 aa29.51■■■□□ 2.31
ATG4D-204ENST00000586417 TET3O43151 1660 aa29.5■■■□□ 2.31
ATG4D-204ENST00000586417 LMTK2Q8IWU2 1503 aa29.49■■■□□ 2.31
ATG4D-204ENST00000586417 CLTCQ00610 1675 aaKnown RBP29.48■■■□□ 2.31
ATG4D-204ENST00000586417 E9PCH4 1651 aa29.47■■■□□ 2.31
ATG4D-204ENST00000586417 ZC3H13Q5T200 1668 aaKnown RBP29.47■■■□□ 2.31
ATG4D-204ENST00000586417 PPP1R15AO75807 674 aaPredicted RBP29.47■■■□□ 2.31
ATG4D-204ENST00000586417 PPP6R1Q9UPN7 881 aa29.47■■■□□ 2.31
ATG4D-204ENST00000586417 CAMSAP1Q5T5Y3 1602 aa29.45■■■□□ 2.31
ATG4D-204ENST00000586417 EFCAB6Q5THR3 1501 aa29.45■■■□□ 2.3
ATG4D-204ENST00000586417 RPRD2Q5VT52 1461 aaKnown RBP29.44■■■□□ 2.3
ATG4D-204ENST00000586417 CFAP65Q6ZU64 1925 aaKnown RBP29.42■■■□□ 2.3
ATG4D-204ENST00000586417 FER1L4A9Z1Z3 1794 aa29.4■■■□□ 2.3
ATG4D-204ENST00000586417 ESF1Q9H501 851 aaKnown RBP29.39■■■□□ 2.3
ATG4D-204ENST00000586417 NPATQ14207 1427 aa29.39■■■□□ 2.3
ATG4D-204ENST00000586417 MADDQ8WXG6 1647 aa29.37■■■□□ 2.29
ATG4D-204ENST00000586417 ADAMTSL3P82987 1691 aa29.37■■■□□ 2.29
ATG4D-204ENST00000586417 ZMYM3Q14202 1370 aa29.34■■■□□ 2.29
ATG4D-204ENST00000586417 PLA2R1Q13018 1463 aa29.34■■■□□ 2.29
ATG4D-204ENST00000586417 ARHGAP31Q2M1Z3 1444 aa29.33■■■□□ 2.29
ATG4D-204ENST00000586417 CNTLNQ9NXG0 1405 aa29.32■■■□□ 2.28
ATG4D-204ENST00000586417 MROH2AA6NES4 1674 aa29.31■■■□□ 2.28
ATG4D-204ENST00000586417 FBXO31Q5XUX0 539 aaPredicted RBP29.31■■■□□ 2.28
ATG4D-204ENST00000586417 SPHKAPQ2M3C7 1700 aa29.3■■■□□ 2.28
ATG4D-204ENST00000586417 RIMS1Q86UR5 1692 aaKnown RBP29.3■■■□□ 2.28
ATG4D-204ENST00000586417 CEBPAP49715 358 aaPredicted RBP29.28■■■□□ 2.28
ATG4D-204ENST00000586417 PTPRTO14522 1441 aa29.27■■■□□ 2.28
ATG4D-204ENST00000586417 L3MBTL2Q969R5 705 aa29.27■■■□□ 2.28
ATG4D-204ENST00000586417 C3P01024 1663 aa29.26■■■□□ 2.28
ATG4D-204ENST00000586417 PREX1Q8TCU6 1659 aa29.26■■■□□ 2.28
ATG4D-204ENST00000586417 DIEXFQ68CQ4 756 aaKnown RBP29.26■■■□□ 2.27
ATG4D-204ENST00000586417 PLPPR3Q6T4P5 718 aa29.24■■■□□ 2.27
ATG4D-204ENST00000586417 NOS1P29475 1434 aa29.24■■■□□ 2.27
ATG4D-204ENST00000586417 TRPM2O94759 1503 aa29.23■■■□□ 2.27
ATG4D-204ENST00000586417 UGGT1Q9NYU2 1555 aa29.23■■■□□ 2.27
ATG4D-204ENST00000586417 ERVK-7P63135 1459 aa29.22■■■□□ 2.27
ATG4D-204ENST00000586417 SYNMO15061 1565 aa29.21■■■□□ 2.27
ATG4D-204ENST00000586417 CCDC144AA2RUR9 1427 aa29.18■■■□□ 2.26
ATG4D-204ENST00000586417 CLTCL1P53675 1640 aa29.18■■■□□ 2.26
ATG4D-204ENST00000586417 SPATA31D1Q6ZQQ2 1576 aa29.18■■■□□ 2.26
ATG4D-204ENST00000586417 KDM4FA0A1W2PPD8 638 aa29.17■■■□□ 2.26
ATG4D-204ENST00000586417 PTPRMP28827 1452 aa29.13■■■□□ 2.25
ATG4D-204ENST00000586417 PIK3C2BO00750 1634 aa29.12■■■□□ 2.25
ATG4D-204ENST00000586417 IDI1Q13907 227 aa29.1■■■□□ 2.25
ATG4D-204ENST00000586417 TNRQ92752 1358 aa29.09■■■□□ 2.25
ATG4D-204ENST00000586417 NBPF8Q3BBV2 869 aa29.08■■■□□ 2.25
ATG4D-204ENST00000586417 SLC52A1Q9NWF4 448 aa29.06■■■□□ 2.24
ATG4D-204ENST00000586417 KIF1BO60333 1816 aa29.05■■■□□ 2.24
ATG4D-204ENST00000586417 RGL3Q3MIN7 710 aa29.03■■■□□ 2.24
ATG4D-204ENST00000586417 SPATA31E1Q6ZUB1 1445 aa29.02■■■□□ 2.24
ATG4D-204ENST00000586417 CHGAP10645 457 aaKnown RBP29.01■■■□□ 2.23
ATG4D-204ENST00000586417 UHRF1BP1Q6BDS2 1440 aa29.01■■■□□ 2.23
ATG4D-204ENST00000586417 MYO5BQ9ULV0 1848 aa29■■■□□ 2.23
ATG4D-204ENST00000586417 ADGRB3O60242 1522 aa28.98■■■□□ 2.23
ATG4D-204ENST00000586417 TMEM131LA2VDJ0 1609 aa28.97■■■□□ 2.23
ATG4D-204ENST00000586417 MYO3AQ8NEV4 1616 aa28.96■■■□□ 2.23
ATG4D-204ENST00000586417 SETD1BQ9UPS6 1966 aaKnown RBP28.95■■■□□ 2.23
ATG4D-204ENST00000586417 HIRIP3Q9BW71 556 aaPredicted RBP28.95■■■□□ 2.22
ATG4D-204ENST00000586417 NLRP1Q9C000 1473 aa28.94■■■□□ 2.22
ATG4D-204ENST00000586417 NEURL4Q96JN8 1562 aa28.92■■■□□ 2.22
ATG4D-204ENST00000586417 STAG3Q9UJ98 1225 aa28.91■■■□□ 2.22
ATG4D-204ENST00000586417 ZNF326Q5BKZ1 582 aaKnown RBP28.9■■■□□ 2.22
ATG4D-204ENST00000586417 UBR1Q8IWV7 1749 aa28.9■■■□□ 2.22
ATG4D-204ENST00000586417 A2ML1A8K2U0 1454 aa28.9■■■□□ 2.22
ATG4D-204ENST00000586417 DCAF11Q8TEB1 546 aa28.9■■■□□ 2.22
ATG4D-204ENST00000586417 RALGAPBQ86X10 1494 aa28.88■■■□□ 2.21
ATG4D-204ENST00000586417 HSPA5P11021 654 aaKnown RBP28.88■■■□□ 2.21
ATG4D-204ENST00000586417 KDM2AQ9Y2K7 1162 aa28.88■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms