RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 GGT6Q6P531 493 aa13.47□□□□□ -0.25
SS18-220ENST00000582092 C3P01024 1663 aa13.47□□□□□ -0.25
SS18-220ENST00000582092 DHX29Q7Z478 1369 aaKnown RBP13.46□□□□□ -0.25
SS18-220ENST00000582092 CEBPAP49715 358 aaPredicted RBP13.45□□□□□ -0.26
SS18-220ENST00000582092 MAST1Q9Y2H9 1570 aa13.45□□□□□ -0.26
SS18-220ENST00000582092 LMTK3Q96Q04 1460 aa13.44□□□□□ -0.26
SS18-220ENST00000582092 KIF3BO15066 747 aa13.44□□□□□ -0.26
SS18-220ENST00000582092 DAPK1P53355 1430 aa13.44□□□□□ -0.26
SS18-220ENST00000582092 CLTCQ00610 1675 aaKnown RBP13.44□□□□□ -0.26
SS18-220ENST00000582092 PTPRKQ15262 1439 aa13.43□□□□□ -0.26
SS18-220ENST00000582092 UHRF1BP1Q6BDS2 1440 aa13.43□□□□□ -0.26
SS18-220ENST00000582092 NAIPQ13075 1403 aa13.42□□□□□ -0.26
SS18-220ENST00000582092 NEUROD1Q13562 356 aa13.42□□□□□ -0.26
SS18-220ENST00000582092 ROCK1Q13464 1354 aa13.42□□□□□ -0.26
SS18-220ENST00000582092 FAM135AQ9P2D6 1515 aa13.41□□□□□ -0.26
SS18-220ENST00000582092 ZMYM3Q14202 1370 aa13.41□□□□□ -0.26
SS18-220ENST00000582092 ANKRD30AQ9BXX3 1397 aa13.41□□□□□ -0.26
SS18-220ENST00000582092 CROCC2H7BZ55 1655 aa13.4□□□□□ -0.26
SS18-220ENST00000582092 ABCC5O15440 1437 aa13.4□□□□□ -0.26
SS18-220ENST00000582092 NPATQ14207 1427 aa13.4□□□□□ -0.26
SS18-220ENST00000582092 DNMT1P26358 1616 aaKnown RBP13.4□□□□□ -0.26
SS18-220ENST00000582092 EIF2AK4Q9P2K8 1649 aaKnown RBP13.39□□□□□ -0.27
SS18-220ENST00000582092 ZNF316A6NFI3 1004 aaPredicted RBP13.39□□□□□ -0.27
SS18-220ENST00000582092 TIMELESSQ9UNS1 1208 aa13.39□□□□□ -0.27
SS18-220ENST00000582092 SHANK2Q9UPX8 1470 aa13.39□□□□□ -0.27
SS18-220ENST00000582092 HSPA2P54652 639 aa13.38□□□□□ -0.27
SS18-220ENST00000582092 DUOX2Q9NRD8 1548 aa13.38□□□□□ -0.27
SS18-220ENST00000582092 WASHC2CQ9Y4E1 1318 aa13.38□□□□□ -0.27
SS18-220ENST00000582092 DMRT2Q9Y5R5 561 aa13.37□□□□□ -0.27
SS18-220ENST00000582092 KDM5DQ9BY66 1539 aa13.36□□□□□ -0.27
SS18-220ENST00000582092 ZC3H13Q5T200 1668 aaKnown RBP13.35□□□□□ -0.27
SS18-220ENST00000582092 GCC2Q8IWJ2 1684 aa13.35□□□□□ -0.27
SS18-220ENST00000582092 KIF15Q9NS87 1388 aa13.34□□□□□ -0.27
SS18-220ENST00000582092 RNF17Q9BXT8 1623 aaKnown RBP13.34□□□□□ -0.27
SS18-220ENST00000582092 ERBINQ96RT1 1412 aa13.33□□□□□ -0.28
SS18-220ENST00000582092 SIN3AQ96ST3 1273 aa13.33□□□□□ -0.28
SS18-220ENST00000582092 TONSLQ96HA7 1378 aa13.32□□□□□ -0.28
SS18-220ENST00000582092 MPHOSPH9Q99550 1183 aa13.32□□□□□ -0.28
SS18-220ENST00000582092 SLC4A1APQ9BWU0 796 aaKnown RBP13.32□□□□□ -0.28
SS18-220ENST00000582092 KANK1Q14678 1352 aa13.32□□□□□ -0.28
SS18-220ENST00000582092 NCOA1Q15788 1441 aa13.31□□□□□ -0.28
SS18-220ENST00000582092 CFAP65Q6ZU64 1925 aaKnown RBP13.31□□□□□ -0.28
SS18-220ENST00000582092 MYO3AQ8NEV4 1616 aa13.31□□□□□ -0.28
SS18-220ENST00000582092 ZNF142P52746 1687 aaPredicted RBP13.31□□□□□ -0.28
SS18-220ENST00000582092 PZPP20742 1482 aa13.3□□□□□ -0.28
SS18-220ENST00000582092 DIEXFQ68CQ4 756 aaKnown RBP13.29□□□□□ -0.28
SS18-220ENST00000582092 ADGRL2O95490 1459 aa13.29□□□□□ -0.28
SS18-220ENST00000582092 CEP152O94986 1710 aa13.28□□□□□ -0.28
SS18-220ENST00000582092 STRCQ7RTU9 1775 aa13.28□□□□□ -0.28
SS18-220ENST00000582092 TNRQ92752 1358 aa13.28□□□□□ -0.28
SS18-220ENST00000582092 CEP170BQ9Y4F5 1589 aaPredicted RBP13.28□□□□□ -0.28
SS18-220ENST00000582092 ANKRD50Q9ULJ7 1429 aa13.27□□□□□ -0.29
SS18-220ENST00000582092 ABCC3O15438 1527 aa13.27□□□□□ -0.29
SS18-220ENST00000582092 A2ML1A8K2U0 1454 aa13.26□□□□□ -0.29
SS18-220ENST00000582092 CAMSAP1Q5T5Y3 1602 aa13.26□□□□□ -0.29
SS18-220ENST00000582092 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.26□□□□□ -0.29
SS18-220ENST00000582092 PRDM15P57071 1507 aaPredicted RBP13.25□□□□□ -0.29
SS18-220ENST00000582092 PKD2Q13563 968 aa13.25□□□□□ -0.29
SS18-220ENST00000582092 DEPDC5O75140 1603 aa13.24□□□□□ -0.29
SS18-220ENST00000582092 NLRP1Q9C000 1473 aa13.24□□□□□ -0.29
SS18-220ENST00000582092 PTPRTO14522 1441 aa13.24□□□□□ -0.29
SS18-220ENST00000582092 FBXO31Q5XUX0 539 aaPredicted RBP13.24□□□□□ -0.29
SS18-220ENST00000582092 MROH1Q8NDA8 1641 aa13.24□□□□□ -0.29
SS18-220ENST00000582092 PLA2R1Q13018 1463 aa13.23□□□□□ -0.29
SS18-220ENST00000582092 NUP155O75694 1391 aa13.23□□□□□ -0.29
SS18-220ENST00000582092 THEMISQ8N1K5 641 aaPredicted RBP13.23□□□□□ -0.29
SS18-220ENST00000582092 PPP1R15AO75807 674 aaPredicted RBP13.22□□□□□ -0.29
SS18-220ENST00000582092 SPATA31D1Q6ZQQ2 1576 aa13.21□□□□□ -0.29
SS18-220ENST00000582092 ARHGAP31Q2M1Z3 1444 aa13.21□□□□□ -0.3
SS18-220ENST00000582092 UGGT1Q9NYU2 1555 aa13.2□□□□□ -0.3
SS18-220ENST00000582092 POLR1AO95602 1720 aaPredicted RBP13.2□□□□□ -0.3
SS18-220ENST00000582092 FOXD1Q16676 465 aa13.2□□□□□ -0.3
SS18-220ENST00000582092 ERVK-7P63135 1459 aa13.2□□□□□ -0.3
SS18-220ENST00000582092 ANKLE2Q86XL3 938 aa13.19□□□□□ -0.3
SS18-220ENST00000582092 FBXO41Q8TF61 875 aa13.19□□□□□ -0.3
SS18-220ENST00000582092 ILDR1Q86SU0 546 aaPredicted RBP13.18□□□□□ -0.3
SS18-220ENST00000582092 LMTK2Q8IWU2 1503 aa13.18□□□□□ -0.3
SS18-220ENST00000582092 NCKAP5LQ9HCH0 1330 aa13.17□□□□□ -0.3
SS18-220ENST00000582092 CERKQ8TCT0 537 aa13.17□□□□□ -0.3
SS18-220ENST00000582092 STAG3Q9UJ98 1225 aa13.17□□□□□ -0.3
SS18-220ENST00000582092 VWDEQ8N2E2 1590 aa13.16□□□□□ -0.3
SS18-220ENST00000582092 ANKRD30BQ9BXX2 1392 aa13.15□□□□□ -0.3
SS18-220ENST00000582092 TET3O43151 1660 aa13.15□□□□□ -0.31
SS18-220ENST00000582092 RPRD2Q5VT52 1461 aaKnown RBP13.14□□□□□ -0.31
SS18-220ENST00000582092 UNC13BO14795 1591 aa13.14□□□□□ -0.31
SS18-220ENST00000582092 EFCAB6Q5THR3 1501 aa13.13□□□□□ -0.31
SS18-220ENST00000582092 UBR1Q8IWV7 1749 aa13.13□□□□□ -0.31
SS18-220ENST00000582092 KDM5AP29375 1690 aaKnown RBP13.12□□□□□ -0.31
SS18-220ENST00000582092 SLC52A1Q9NWF4 448 aa13.12□□□□□ -0.31
SS18-220ENST00000582092 EID1Q9Y6B2 187 aa13.12□□□□□ -0.31
SS18-220ENST00000582092 L3MBTL2Q969R5 705 aa13.11□□□□□ -0.31
SS18-220ENST00000582092 IQGAP3Q86VI3 1631 aa13.1□□□□□ -0.31
SS18-220ENST00000582092 PIK3C2BO00750 1634 aa13.1□□□□□ -0.31
SS18-220ENST00000582092 IQGAP1P46940 1657 aa13.09□□□□□ -0.31
SS18-220ENST00000582092 NPHP4O75161 1426 aaPredicted RBP13.09□□□□□ -0.31
SS18-220ENST00000582092 HDGFP51858 240 aaKnown RBP13.09□□□□□ -0.31
SS18-220ENST00000582092 IQSEC2Q5JU85 1478 aa13.09□□□□□ -0.31
SS18-220ENST00000582092 NOS1P29475 1434 aa13.08□□□□□ -0.32
SS18-220ENST00000582092 MED14O60244 1454 aa13.08□□□□□ -0.32
SS18-220ENST00000582092 NEURL4Q96JN8 1562 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms