RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 VPS9D1Q9Y2B5 631 aa11.5□□□□□ -0.57
SMCHD1-205ENST00000581383 PCDHGA10Q9Y5H3 936 aa11.5□□□□□ -0.57
SMCHD1-205ENST00000581383 RBM33Q96EV2 1170 aaKnown RBP11.49□□□□□ -0.57
SMCHD1-205ENST00000581383 MRPL50Q8N5N7 158 aaKnown RBP11.48□□□□□ -0.57
SMCHD1-205ENST00000581383 EPAS1Q99814 870 aa11.48□□□□□ -0.57
SMCHD1-205ENST00000581383 NBPF3Q9H094 633 aa11.47□□□□□ -0.57
SMCHD1-205ENST00000581383 HRO43593 1189 aa11.46□□□□□ -0.57
SMCHD1-205ENST00000581383 NBR1Q14596 966 aa11.45□□□□□ -0.58
SMCHD1-205ENST00000581383 SPDYE16A6NNV3 312 aaPredicted RBP11.44□□□□□ -0.58
SMCHD1-205ENST00000581383 PPP1R3GB7ZBB8 358 aa11.44□□□□□ -0.58
SMCHD1-205ENST00000581383 HAP1P54257 671 aaPredicted RBP11.44□□□□□ -0.58
SMCHD1-205ENST00000581383 ZBED2Q9BTP6 218 aa11.44□□□□□ -0.58
SMCHD1-205ENST00000581383 PTPN5P54829 565 aa11.43□□□□□ -0.58
SMCHD1-205ENST00000581383 SLC4A5Q9BY07 1137 aa11.43□□□□□ -0.58
SMCHD1-205ENST00000581383 GRXCR2A6NFK2 248 aa11.42□□□□□ -0.58
SMCHD1-205ENST00000581383 MAP3K7O43318 606 aa11.42□□□□□ -0.58
SMCHD1-205ENST00000581383 PDIA6Q15084 440 aa11.4□□□□□ -0.58
SMCHD1-205ENST00000581383 C6orf132Q5T0Z8 1188 aa11.4□□□□□ -0.58
SMCHD1-205ENST00000581383 WNT2BQ93097 391 aa11.4□□□□□ -0.58
SMCHD1-205ENST00000581383 TSHZ2Q9NRE2 1034 aa11.4□□□□□ -0.58
SMCHD1-205ENST00000581383 IFFO2Q5TF58 517 aa11.39□□□□□ -0.59
SMCHD1-205ENST00000581383 COL9A1P20849 921 aa11.38□□□□□ -0.59
SMCHD1-205ENST00000581383 PROX2Q3B8N5 592 aa11.38□□□□□ -0.59
SMCHD1-205ENST00000581383 RABGEF1Q9UJ41 708 aa11.36□□□□□ -0.59
SMCHD1-205ENST00000581383 KIAA1468Q9P260 1216 aa11.34□□□□□ -0.59
SMCHD1-205ENST00000581383 BHMG1C9JSJ3 638 aaPredicted RBP11.33□□□□□ -0.6
SMCHD1-205ENST00000581383 ANKK1Q8NFD2 765 aa11.33□□□□□ -0.6
SMCHD1-205ENST00000581383 A0A0G2JS52 829 aa11.32□□□□□ -0.6
SMCHD1-205ENST00000581383 EN1Q05925 392 aaPredicted RBP11.32□□□□□ -0.6
SMCHD1-205ENST00000581383 TSR1Q2NL82 804 aaKnown RBP11.3□□□□□ -0.6
SMCHD1-205ENST00000581383 THSD4Q6ZMP0 1018 aa11.3□□□□□ -0.6
SMCHD1-205ENST00000581383 PACS2Q86VP3 889 aa11.3□□□□□ -0.6
SMCHD1-205ENST00000581383 TRIM6-TRIM34B2RNG4 842 aa11.29□□□□□ -0.6
SMCHD1-205ENST00000581383 SEPT9Q9UHD8 586 aaPredicted RBP11.28□□□□□ -0.6
SMCHD1-205ENST00000581383 ARIH1Q9Y4X5 557 aaPredicted RBP11.28□□□□□ -0.6
SMCHD1-205ENST00000581383 LAPTM4BQ86VI4 370 aa11.27□□□□□ -0.61
SMCHD1-205ENST00000581383 ONECUT3O60422 494 aaPredicted RBP11.26□□□□□ -0.61
SMCHD1-205ENST00000581383 Q6ZNB5 142 aa11.26□□□□□ -0.61
SMCHD1-205ENST00000581383 CERKQ8TCT0 537 aa11.25□□□□□ -0.61
SMCHD1-205ENST00000581383 ARHGEF1Q92888 912 aaKnown RBP11.25□□□□□ -0.61
SMCHD1-205ENST00000581383 P3H3Q8IVL6 736 aa11.24□□□□□ -0.61
SMCHD1-205ENST00000581383 VSIG10Q8N0Z9 540 aa11.24□□□□□ -0.61
SMCHD1-205ENST00000581383 ZFRQ96KR1 1074 aaKnown RBP11.24□□□□□ -0.61
SMCHD1-205ENST00000581383 BCAMP50895 628 aa11.22□□□□□ -0.61
SMCHD1-205ENST00000581383 FAM98CQ17RN3 349 aaKnown RBP11.22□□□□□ -0.61
SMCHD1-205ENST00000581383 CDCA7LQ96GN5 454 aa11.22□□□□□ -0.61
SMCHD1-205ENST00000581383 HDGFP51858 240 aaKnown RBP11.21□□□□□ -0.61
SMCHD1-205ENST00000581383 KCNV2Q8TDN2 545 aa11.21□□□□□ -0.61
SMCHD1-205ENST00000581383 LRCH3Q96II8 777 aa11.21□□□□□ -0.61
SMCHD1-205ENST00000581383 PRSS12P56730 875 aa11.2□□□□□ -0.62
SMCHD1-205ENST00000581383 OSBPP22059 807 aa11.19□□□□□ -0.62
SMCHD1-205ENST00000581383 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.19□□□□□ -0.62
SMCHD1-205ENST00000581383 TSKSQ9UJT2 592 aa11.19□□□□□ -0.62
SMCHD1-205ENST00000581383 SOWAHBA6NEL2 793 aa11.18□□□□□ -0.62
SMCHD1-205ENST00000581383 NBPF26B4DH59 902 aa11.18□□□□□ -0.62
SMCHD1-205ENST00000581383 CDHR5Q9HBB8 845 aa11.17□□□□□ -0.62
SMCHD1-205ENST00000581383 PNMA3Q9UL41 463 aa11.17□□□□□ -0.62
SMCHD1-205ENST00000581383 KDM2AQ9Y2K7 1162 aa11.17□□□□□ -0.62
SMCHD1-205ENST00000581383 SMAPO00193 183 aa11.16□□□□□ -0.62
SMCHD1-205ENST00000581383 RNF40O75150 1001 aa11.16□□□□□ -0.62
SMCHD1-205ENST00000581383 PRIM1P49642 420 aaKnown RBP11.14□□□□□ -0.63
SMCHD1-205ENST00000581383 HPS5Q9UPZ3 1129 aa11.14□□□□□ -0.63
SMCHD1-205ENST00000581383 MLLT3P42568 568 aaPredicted RBP11.13□□□□□ -0.63
SMCHD1-205ENST00000581383 PPP4CP60510 307 aa11.13□□□□□ -0.63
SMCHD1-205ENST00000581383 TATDN2Q93075 761 aa11.13□□□□□ -0.63
SMCHD1-205ENST00000581383 NUTM2FA1L443 756 aa11.12□□□□□ -0.63
SMCHD1-205ENST00000581383 NYAP1Q6ZVC0 841 aa11.12□□□□□ -0.63
SMCHD1-205ENST00000581383 NUDT18Q6ZVK8 323 aa11.12□□□□□ -0.63
SMCHD1-205ENST00000581383 WBP1LQ9NX94 342 aa11.12□□□□□ -0.63
SMCHD1-205ENST00000581383 TSR3Q9UJK0 312 aaKnown RBP11.12□□□□□ -0.63
SMCHD1-205ENST00000581383 SLC4A3P48751 1232 aa11.11□□□□□ -0.63
SMCHD1-205ENST00000581383 SAMD7Q7Z3H4 446 aa11.09□□□□□ -0.63
SMCHD1-205ENST00000581383 PADI6Q6TGC4 694 aa11.08□□□□□ -0.64
SMCHD1-205ENST00000581383 RBM27Q9P2N5 1060 aaKnown RBP11.07□□□□□ -0.64
SMCHD1-205ENST00000581383 SEMA3EO15041 775 aa11.06□□□□□ -0.64
SMCHD1-205ENST00000581383 SMYD5Q6GMV2 418 aa11.06□□□□□ -0.64
SMCHD1-205ENST00000581383 FAM198AQ9UFP1 575 aa11.06□□□□□ -0.64
SMCHD1-205ENST00000581383 KCNC4Q03721 635 aa11.03□□□□□ -0.64
SMCHD1-205ENST00000581383 LAPTM4AQ15012 233 aa11.03□□□□□ -0.64
SMCHD1-205ENST00000581383 NECTIN2Q92692 538 aa11.02□□□□□ -0.65
SMCHD1-205ENST00000581383 NPDC1Q9NQX5 325 aaPredicted RBP11.01□□□□□ -0.65
SMCHD1-205ENST00000581383 LCE2BO14633 110 aa11□□□□□ -0.65
SMCHD1-205ENST00000581383 TRAF7Q6Q0C0 670 aa11□□□□□ -0.65
SMCHD1-205ENST00000581383 ITGBL1O95965 494 aaPredicted RBP10.99□□□□□ -0.65
SMCHD1-205ENST00000581383 SLF2Q8IX21 1173 aa10.99□□□□□ -0.65
SMCHD1-205ENST00000581383 RBM46Q8TBY0 533 aaKnown RBP10.99□□□□□ -0.65
SMCHD1-205ENST00000581383 BCANQ96GW7 911 aa10.99□□□□□ -0.65
SMCHD1-205ENST00000581383 C3orf80F5H4A9 247 aa10.98□□□□□ -0.65
SMCHD1-205ENST00000581383 FCHSD2O94868 740 aa10.98□□□□□ -0.65
SMCHD1-205ENST00000581383 PTGDRQ13258 359 aa10.98□□□□□ -0.65
SMCHD1-205ENST00000581383 SWT1Q5T5J6 900 aaKnown RBP10.98□□□□□ -0.65
SMCHD1-205ENST00000581383 TULP1O00294 542 aaPredicted RBP10.94□□□□□ -0.66
SMCHD1-205ENST00000581383 TTC13Q8NBP0 860 aa10.94□□□□□ -0.66
SMCHD1-205ENST00000581383 DNAJB2P25686 324 aa10.92□□□□□ -0.66
SMCHD1-205ENST00000581383 RBM26Q5T8P6 1007 aaKnown RBP10.92□□□□□ -0.66
SMCHD1-205ENST00000581383 FAM161AQ3B820 660 aa10.91□□□□□ -0.66
SMCHD1-205ENST00000581383 TESPA1A2RU30 521 aaPredicted RBP10.9□□□□□ -0.66
SMCHD1-205ENST00000581383 GFRA3O60609 400 aa10.9□□□□□ -0.66
SMCHD1-205ENST00000581383 EYA1Q99502 592 aa10.9□□□□□ -0.66
SMCHD1-205ENST00000581383 MTRQ99707 1265 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms