RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 DEPDC5O75140 1603 aa15.88■□□□□ 0.13
SS18-213ENST00000579640 TRIM52Q96A61 297 aa15.88■□□□□ 0.13
SS18-213ENST00000579640 KIF3BO15066 747 aa15.87■□□□□ 0.13
SS18-213ENST00000579640 RNF17Q9BXT8 1623 aaKnown RBP15.87■□□□□ 0.13
SS18-213ENST00000579640 NUP155O75694 1391 aa15.85■□□□□ 0.13
SS18-213ENST00000579640 DHX57Q6P158 1386 aaKnown RBP15.85■□□□□ 0.13
SS18-213ENST00000579640 PRDM15P57071 1507 aaPredicted RBP15.85■□□□□ 0.13
SS18-213ENST00000579640 KANK1Q14678 1352 aa15.84■□□□□ 0.13
SS18-213ENST00000579640 IQGAP3Q86VI3 1631 aa15.84■□□□□ 0.13
SS18-213ENST00000579640 MROH1Q8NDA8 1641 aa15.83■□□□□ 0.12
SS18-213ENST00000579640 PZPP20742 1482 aa15.82■□□□□ 0.12
SS18-213ENST00000579640 VWDEQ8N2E2 1590 aa15.82■□□□□ 0.12
SS18-213ENST00000579640 FAM135AQ9P2D6 1515 aa15.82■□□□□ 0.12
SS18-213ENST00000579640 CCER1Q8TC90 406 aaPredicted RBP15.81■□□□□ 0.12
SS18-213ENST00000579640 MPHOSPH9Q99550 1183 aa15.81■□□□□ 0.12
SS18-213ENST00000579640 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.81■□□□□ 0.122e-7■■■□□ 19
SS18-213ENST00000579640 SLC4A1APQ9BWU0 796 aaKnown RBP15.8■□□□□ 0.12
SS18-213ENST00000579640 PPP6R1Q9UPN7 881 aa15.8■□□□□ 0.12
SS18-213ENST00000579640 CLSPNQ9HAW4 1339 aa15.79■□□□□ 0.12
SS18-213ENST00000579640 SIGLEC1Q9BZZ2 1709 aa15.79■□□□□ 0.12
SS18-213ENST00000579640 GGT6Q6P531 493 aa15.79■□□□□ 0.12
SS18-213ENST00000579640 LMTK2Q8IWU2 1503 aa15.78■□□□□ 0.12
SS18-213ENST00000579640 ZC3H13Q5T200 1668 aaKnown RBP15.77■□□□□ 0.12
SS18-213ENST00000579640 TET3O43151 1660 aa15.76■□□□□ 0.11
SS18-213ENST00000579640 ARID4BQ4LE39 1312 aaPredicted RBP15.76■□□□□ 0.11
SS18-213ENST00000579640 ABCC3O15438 1527 aa15.75■□□□□ 0.11
SS18-213ENST00000579640 PKD2Q13563 968 aa15.74■□□□□ 0.11
SS18-213ENST00000579640 WASHC2CQ9Y4E1 1318 aa15.74■□□□□ 0.11
SS18-213ENST00000579640 CEP152O94986 1710 aa15.73■□□□□ 0.11
SS18-213ENST00000579640 EFCAB6Q5THR3 1501 aa15.72■□□□□ 0.11
SS18-213ENST00000579640 CAMSAP1Q5T5Y3 1602 aa15.7■□□□□ 0.1
SS18-213ENST00000579640 RPRD2Q5VT52 1461 aaKnown RBP15.7■□□□□ 0.1
SS18-213ENST00000579640 E9PCH4 1651 aa15.7■□□□□ 0.1
SS18-213ENST00000579640 MLECQ14165 292 aa15.7■□□□□ 0.1
SS18-213ENST00000579640 ARHGAP31Q2M1Z3 1444 aa15.69■□□□□ 0.1
SS18-213ENST00000579640 CNTLNQ9NXG0 1405 aa15.69■□□□□ 0.1
SS18-213ENST00000579640 ESF1Q9H501 851 aaKnown RBP15.68■□□□□ 0.1
SS18-213ENST00000579640 ANKRD30BQ9BXX2 1392 aa15.68■□□□□ 0.1
SS18-213ENST00000579640 CLTCQ00610 1675 aaKnown RBP15.68■□□□□ 0.1
SS18-213ENST00000579640 FOXD1Q16676 465 aa15.67■□□□□ 0.1
SS18-213ENST00000579640 NPATQ14207 1427 aa15.65■□□□□ 0.1
SS18-213ENST00000579640 MROH2AA6NES4 1674 aa15.65■□□□□ 0.1
SS18-213ENST00000579640 PTPRTO14522 1441 aa15.65■□□□□ 0.1
SS18-213ENST00000579640 SPHKAPQ2M3C7 1700 aa15.64■□□□□ 0.09
SS18-213ENST00000579640 FER1L4A9Z1Z3 1794 aa15.64■□□□□ 0.09
SS18-213ENST00000579640 ZEB1P37275 1124 aaPredicted RBP15.64■□□□□ 0.09
SS18-213ENST00000579640 TRPM2O94759 1503 aa15.63■□□□□ 0.09
SS18-213ENST00000579640 PLA2R1Q13018 1463 aa15.62■□□□□ 0.09
SS18-213ENST00000579640 ADAMTSL3P82987 1691 aa15.61■□□□□ 0.09
SS18-213ENST00000579640 ZMYM3Q14202 1370 aa15.61■□□□□ 0.09
SS18-213ENST00000579640 CCDC144AA2RUR9 1427 aa15.61■□□□□ 0.09
SS18-213ENST00000579640 NOS1P29475 1434 aa15.6■□□□□ 0.09
SS18-213ENST00000579640 SIN3AQ96ST3 1273 aa15.6■□□□□ 0.09
SS18-213ENST00000579640 PREX1Q8TCU6 1659 aa15.59■□□□□ 0.09
SS18-213ENST00000579640 MADDQ8WXG6 1647 aa15.59■□□□□ 0.09
SS18-213ENST00000579640 TIMELESSQ9UNS1 1208 aa15.59■□□□□ 0.09
SS18-213ENST00000579640 ERVK-7P63135 1459 aa15.58■□□□□ 0.08
SS18-213ENST00000579640 SPATA31D1Q6ZQQ2 1576 aa15.58■□□□□ 0.08
SS18-213ENST00000579640 NEUROD1Q13562 356 aa15.57■□□□□ 0.08
SS18-213ENST00000579640 CFAP65Q6ZU64 1925 aaKnown RBP15.57■□□□□ 0.08
SS18-213ENST00000579640 RIMS1Q86UR5 1692 aaKnown RBP15.55■□□□□ 0.08
SS18-213ENST00000579640 CLTCL1P53675 1640 aa15.55■□□□□ 0.08
SS18-213ENST00000579640 C3P01024 1663 aa15.55■□□□□ 0.08
SS18-213ENST00000579640 SYNMO15061 1565 aa15.55■□□□□ 0.08
SS18-213ENST00000579640 SLC52A1Q9NWF4 448 aa15.54■□□□□ 0.08
SS18-213ENST00000579640 TONSLQ96HA7 1378 aa15.54■□□□□ 0.08
SS18-213ENST00000579640 PIK3C2BO00750 1634 aa15.53■□□□□ 0.08
SS18-213ENST00000579640 FBXO31Q5XUX0 539 aaPredicted RBP15.53■□□□□ 0.08
SS18-213ENST00000579640 NEURL4Q96JN8 1562 aa15.53■□□□□ 0.08
SS18-213ENST00000579640 KIF1BO60333 1816 aa15.52■□□□□ 0.07
SS18-213ENST00000579640 UGGT1Q9NYU2 1555 aa15.51■□□□□ 0.07
SS18-213ENST00000579640 TNRQ92752 1358 aa15.5■□□□□ 0.07
SS18-213ENST00000579640 SPATA31E1Q6ZUB1 1445 aa15.49■□□□□ 0.07
SS18-213ENST00000579640 CEBPAP49715 358 aaPredicted RBP15.48■□□□□ 0.07
SS18-213ENST00000579640 ADGRB3O60242 1522 aa15.48■□□□□ 0.07
SS18-213ENST00000579640 IDI1Q13907 227 aa15.47■□□□□ 0.07
SS18-213ENST00000579640 PTPRMP28827 1452 aa15.47■□□□□ 0.07
SS18-213ENST00000579640 NLRP1Q9C000 1473 aa15.47■□□□□ 0.07
SS18-213ENST00000579640 L3MBTL2Q969R5 705 aa15.46■□□□□ 0.07
SS18-213ENST00000579640 KDM5AP29375 1690 aaKnown RBP15.45■□□□□ 0.06
SS18-213ENST00000579640 STAC3Q96MF2 364 aa15.44■□□□□ 0.06
SS18-213ENST00000579640 TMEM131LA2VDJ0 1609 aa15.44■□□□□ 0.06
SS18-213ENST00000579640 PPP1R15AO75807 674 aaPredicted RBP15.43■□□□□ 0.06
SS18-213ENST00000579640 CHGAP10645 457 aaKnown RBP15.43■□□□□ 0.06
SS18-213ENST00000579640 RGL3Q3MIN7 710 aa15.43■□□□□ 0.06
SS18-213ENST00000579640 SETD1BQ9UPS6 1966 aaKnown RBP15.42■□□□□ 0.06
SS18-213ENST00000579640 RPGRIP1LQ68CZ1 1315 aa15.42■□□□□ 0.06
SS18-213ENST00000579640 PLPPR3Q6T4P5 718 aa15.42■□□□□ 0.06
SS18-213ENST00000579640 STAG3Q9UJ98 1225 aa15.42■□□□□ 0.06
SS18-213ENST00000579640 MYO3AQ8NEV4 1616 aa15.41■□□□□ 0.06
SS18-213ENST00000579640 KDM4FA0A1W2PPD8 638 aa15.4■□□□□ 0.06
SS18-213ENST00000579640 A2ML1A8K2U0 1454 aa15.4■□□□□ 0.06
SS18-213ENST00000579640 ZNF326Q5BKZ1 582 aaKnown RBP15.4■□□□□ 0.06
SS18-213ENST00000579640 DCAF11Q8TEB1 546 aa15.4■□□□□ 0.06
SS18-213ENST00000579640 IFT172Q9UG01 1749 aa15.39■□□□□ 0.05
SS18-213ENST00000579640 MYO5BQ9ULV0 1848 aa15.39■□□□□ 0.05
SS18-213ENST00000579640 UBR1Q8IWV7 1749 aa15.39■□□□□ 0.05
SS18-213ENST00000579640 UHRF1BP1Q6BDS2 1440 aa15.38■□□□□ 0.05
SS18-213ENST00000579640 MYOM2P54296 1465 aa15.38■□□□□ 0.05
SS18-213ENST00000579640 PPLO60437 1756 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms