RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 PZPP20742 1482 aa35.44■■■■□ 3.26
ATPAF1-213ENST00000574428 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.44■■■■□ 3.268e-11■■■□□ 18.6
ATPAF1-213ENST00000574428 KDM5DQ9BY66 1539 aa35.44■■■■□ 3.26
ATPAF1-213ENST00000574428 DEPDC5O75140 1603 aa35.43■■■■□ 3.26
ATPAF1-213ENST00000574428 REREQ9P2R6 1566 aa35.41■■■■□ 3.26
ATPAF1-213ENST00000574428 MPHOSPH9Q99550 1183 aa35.41■■■■□ 3.26
ATPAF1-213ENST00000574428 BCORL1Q5H9F3 1711 aa35.4■■■■□ 3.26
ATPAF1-213ENST00000574428 MROH1Q8NDA8 1641 aa35.38■■■■□ 3.25
ATPAF1-213ENST00000574428 RNF17Q9BXT8 1623 aaKnown RBP35.38■■■■□ 3.25
ATPAF1-213ENST00000574428 SLC4A1APQ9BWU0 796 aaKnown RBP35.37■■■■□ 3.25
ATPAF1-213ENST00000574428 FAM135AQ9P2D6 1515 aa35.37■■■■□ 3.25
ATPAF1-213ENST00000574428 SIGLEC1Q9BZZ2 1709 aa35.36■■■■□ 3.25
ATPAF1-213ENST00000574428 IQGAP3Q86VI3 1631 aa35.35■■■■□ 3.25
ATPAF1-213ENST00000574428 PRDM15P57071 1507 aaPredicted RBP35.35■■■■□ 3.25
ATPAF1-213ENST00000574428 AGLP35573 1532 aa35.3■■■■□ 3.24
ATPAF1-213ENST00000574428 GGT6Q6P531 493 aa35.29■■■■□ 3.24
ATPAF1-213ENST00000574428 VWDEQ8N2E2 1590 aa35.28■■■■□ 3.24
ATPAF1-213ENST00000574428 FOXD1Q16676 465 aa35.28■■■■□ 3.24
ATPAF1-213ENST00000574428 KANK1Q14678 1352 aa35.28■■■■□ 3.24
ATPAF1-213ENST00000574428 CLSPNQ9HAW4 1339 aa35.25■■■■□ 3.23
ATPAF1-213ENST00000574428 PKD2Q13563 968 aa35.25■■■■□ 3.23
ATPAF1-213ENST00000574428 CEP152O94986 1710 aa35.19■■■■□ 3.22
ATPAF1-213ENST00000574428 TET3O43151 1660 aa35.17■■■■□ 3.22
ATPAF1-213ENST00000574428 ARID4BQ4LE39 1312 aaPredicted RBP35.15■■■■□ 3.22
ATPAF1-213ENST00000574428 ABCC3O15438 1527 aa35.15■■■■□ 3.22
ATPAF1-213ENST00000574428 LMTK2Q8IWU2 1503 aa35.14■■■■□ 3.22
ATPAF1-213ENST00000574428 MLECQ14165 292 aa35.13■■■■□ 3.21
ATPAF1-213ENST00000574428 WASHC2CQ9Y4E1 1318 aa35.13■■■■□ 3.21
ATPAF1-213ENST00000574428 E9PCH4 1651 aa35.11■■■■□ 3.21
ATPAF1-213ENST00000574428 ANKRD30BQ9BXX2 1392 aa35.11■■■■□ 3.21
ATPAF1-213ENST00000574428 SIN3AQ96ST3 1273 aa35.1■■■■□ 3.21
ATPAF1-213ENST00000574428 EFCAB6Q5THR3 1501 aa35.1■■■■□ 3.21
ATPAF1-213ENST00000574428 ZC3H13Q5T200 1668 aaKnown RBP35.09■■■■□ 3.21
ATPAF1-213ENST00000574428 CAMSAP1Q5T5Y3 1602 aa35.06■■■■□ 3.2
ATPAF1-213ENST00000574428 NEUROD1Q13562 356 aa35.04■■■■□ 3.2
ATPAF1-213ENST00000574428 ZEB1P37275 1124 aaPredicted RBP35.02■■■■□ 3.2
ATPAF1-213ENST00000574428 PPP6R1Q9UPN7 881 aa35■■■■□ 3.19
ATPAF1-213ENST00000574428 CLTCQ00610 1675 aaKnown RBP35■■■■□ 3.19
ATPAF1-213ENST00000574428 PLA2R1Q13018 1463 aa34.98■■■■□ 3.19
ATPAF1-213ENST00000574428 NPATQ14207 1427 aa34.98■■■■□ 3.19
ATPAF1-213ENST00000574428 SPHKAPQ2M3C7 1700 aa34.94■■■■□ 3.18
ATPAF1-213ENST00000574428 RPRD2Q5VT52 1461 aaKnown RBP34.94■■■■□ 3.18
ATPAF1-213ENST00000574428 PTPRTO14522 1441 aa34.91■■■■□ 3.18
ATPAF1-213ENST00000574428 ARHGAP31Q2M1Z3 1444 aa34.91■■■■□ 3.18
ATPAF1-213ENST00000574428 ESF1Q9H501 851 aaKnown RBP34.9■■■■□ 3.18
ATPAF1-213ENST00000574428 TRPM2O94759 1503 aa34.9■■■■□ 3.18
ATPAF1-213ENST00000574428 CCDC144AA2RUR9 1427 aa34.87■■■■□ 3.17
ATPAF1-213ENST00000574428 CFAP65Q6ZU64 1925 aaKnown RBP34.85■■■■□ 3.17
ATPAF1-213ENST00000574428 FER1L4A9Z1Z3 1794 aa34.84■■■■□ 3.17
ATPAF1-213ENST00000574428 CNTLNQ9NXG0 1405 aa34.82■■■■□ 3.16
ATPAF1-213ENST00000574428 TONSLQ96HA7 1378 aa34.82■■■■□ 3.16
ATPAF1-213ENST00000574428 CLTCL1P53675 1640 aa34.8■■■■□ 3.16
ATPAF1-213ENST00000574428 PREX1Q8TCU6 1659 aa34.8■■■■□ 3.16
ATPAF1-213ENST00000574428 UGGT1Q9NYU2 1555 aa34.8■■■■□ 3.16
ATPAF1-213ENST00000574428 ZMYM3Q14202 1370 aa34.8■■■■□ 3.16
ATPAF1-213ENST00000574428 NOS1P29475 1434 aa34.79■■■■□ 3.16
ATPAF1-213ENST00000574428 MROH2AA6NES4 1674 aa34.79■■■■□ 3.16
ATPAF1-213ENST00000574428 SYNMO15061 1565 aa34.77■■■■□ 3.16
ATPAF1-213ENST00000574428 FBXO31Q5XUX0 539 aaPredicted RBP34.77■■■■□ 3.16
ATPAF1-213ENST00000574428 MADDQ8WXG6 1647 aa34.76■■■■□ 3.15
ATPAF1-213ENST00000574428 ERVK-7P63135 1459 aa34.75■■■■□ 3.15
ATPAF1-213ENST00000574428 TIMELESSQ9UNS1 1208 aa34.74■■■■□ 3.15
ATPAF1-213ENST00000574428 ADAMTSL3P82987 1691 aa34.73■■■■□ 3.15
ATPAF1-213ENST00000574428 SPATA31D1Q6ZQQ2 1576 aa34.69■■■■□ 3.14
ATPAF1-213ENST00000574428 RIMS1Q86UR5 1692 aaKnown RBP34.68■■■■□ 3.14
ATPAF1-213ENST00000574428 L3MBTL2Q969R5 705 aa34.68■■■■□ 3.14
ATPAF1-213ENST00000574428 C3P01024 1663 aa34.67■■■■□ 3.14
ATPAF1-213ENST00000574428 PIK3C2BO00750 1634 aa34.67■■■■□ 3.14
ATPAF1-213ENST00000574428 CEBPAP49715 358 aaPredicted RBP34.64■■■■□ 3.14
ATPAF1-213ENST00000574428 SPATA31E1Q6ZUB1 1445 aa34.64■■■■□ 3.14
ATPAF1-213ENST00000574428 RGL3Q3MIN7 710 aa34.62■■■■□ 3.13
ATPAF1-213ENST00000574428 KIF1BO60333 1816 aa34.61■■■■□ 3.13
ATPAF1-213ENST00000574428 PLPPR3Q6T4P5 718 aa34.6■■■■□ 3.13
ATPAF1-213ENST00000574428 PPP1R15AO75807 674 aaPredicted RBP34.58■■■■□ 3.13
ATPAF1-213ENST00000574428 IDI1Q13907 227 aa34.58■■■■□ 3.13
ATPAF1-213ENST00000574428 SLC52A1Q9NWF4 448 aa34.58■■■■□ 3.13
ATPAF1-213ENST00000574428 ADGRB3O60242 1522 aa34.56■■■■□ 3.12
ATPAF1-213ENST00000574428 TNRQ92752 1358 aa34.56■■■■□ 3.12
ATPAF1-213ENST00000574428 CHGAP10645 457 aaKnown RBP34.55■■■■□ 3.12
ATPAF1-213ENST00000574428 NEURL4Q96JN8 1562 aa34.55■■■■□ 3.12
ATPAF1-213ENST00000574428 DCAF11Q8TEB1 546 aa34.51■■■■□ 3.12
ATPAF1-213ENST00000574428 KDM2AQ9Y2K7 1162 aa34.48■■■■□ 3.11
ATPAF1-213ENST00000574428 TMEM131LA2VDJ0 1609 aa34.48■■■■□ 3.11
ATPAF1-213ENST00000574428 ZNF326Q5BKZ1 582 aaKnown RBP34.44■■■■□ 3.1
ATPAF1-213ENST00000574428 MYO5BQ9ULV0 1848 aa34.44■■■■□ 3.1
ATPAF1-213ENST00000574428 PTPRMP28827 1452 aa34.43■■■■□ 3.1
ATPAF1-213ENST00000574428 NBPF8Q3BBV2 869 aa34.41■■■■□ 3.1
ATPAF1-213ENST00000574428 STAG3Q9UJ98 1225 aa34.4■■■■□ 3.1
ATPAF1-213ENST00000574428 IFT172Q9UG01 1749 aa34.39■■■■□ 3.1
ATPAF1-213ENST00000574428 NLRP1Q9C000 1473 aa34.39■■■■□ 3.1
ATPAF1-213ENST00000574428 UHRF1BP1Q6BDS2 1440 aa34.37■■■■□ 3.09
ATPAF1-213ENST00000574428 MYO3AQ8NEV4 1616 aa34.37■■■■□ 3.09
ATPAF1-213ENST00000574428 A2ML1A8K2U0 1454 aa34.36■■■■□ 3.09
ATPAF1-213ENST00000574428 PPLO60437 1756 aa34.35■■■■□ 3.09
ATPAF1-213ENST00000574428 PRAG1Q86YV5 1406 aa34.34■■■■□ 3.09
ATPAF1-213ENST00000574428 NEXMIFQ5QGS0 1516 aa34.33■■■■□ 3.09
ATPAF1-213ENST00000574428 UBR1Q8IWV7 1749 aa34.32■■■■□ 3.09
ATPAF1-213ENST00000574428 KDM4FA0A1W2PPD8 638 aa34.32■■■■□ 3.08
ATPAF1-213ENST00000574428 RPGRIP1LQ68CZ1 1315 aa34.32■■■■□ 3.08
ATPAF1-213ENST00000574428 MYOM2P54296 1465 aa34.31■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms