RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ABCA6Q8N139 1617 aa20■□□□□ 0.79
CCDC40-209ENST00000573474 EIF2AK4Q9P2K8 1649 aaKnown RBP19.99■□□□□ 0.79
CCDC40-209ENST00000573474 KIF3BO15066 747 aa19.99■□□□□ 0.79
CCDC40-209ENST00000573474 YEATS2Q9ULM3 1422 aa19.99■□□□□ 0.79
CCDC40-209ENST00000573474 DIP2CQ9Y2E4 1556 aa19.99■□□□□ 0.79
CCDC40-209ENST00000573474 ATP10AO60312 1499 aa19.96■□□□□ 0.79
CCDC40-209ENST00000573474 FAM135AQ9P2D6 1515 aa19.96■□□□□ 0.79
CCDC40-209ENST00000573474 PKD2Q13563 968 aa19.95■□□□□ 0.78
CCDC40-209ENST00000573474 DEPDC5O75140 1603 aa19.94■□□□□ 0.78
CCDC40-209ENST00000573474 KANK1Q14678 1352 aa19.94■□□□□ 0.78
CCDC40-209ENST00000573474 IQGAP3Q86VI3 1631 aa19.93■□□□□ 0.78
CCDC40-209ENST00000573474 FOXD1Q16676 465 aa19.92■□□□□ 0.78
CCDC40-209ENST00000573474 SIN3AQ96ST3 1273 aa19.92■□□□□ 0.78
CCDC40-209ENST00000573474 ANKRD30BQ9BXX2 1392 aa19.92■□□□□ 0.78
CCDC40-209ENST00000573474 BCORL1Q5H9F3 1711 aa19.91■□□□□ 0.78
CCDC40-209ENST00000573474 NEUROD1Q13562 356 aa19.9■□□□□ 0.78
CCDC40-209ENST00000573474 REREQ9P2R6 1566 aa19.9■□□□□ 0.78
CCDC40-209ENST00000573474 RNF17Q9BXT8 1623 aaKnown RBP19.9■□□□□ 0.78
CCDC40-209ENST00000573474 PRDM15P57071 1507 aaPredicted RBP19.89■□□□□ 0.77
CCDC40-209ENST00000573474 VWDEQ8N2E2 1590 aa19.88■□□□□ 0.77
CCDC40-209ENST00000573474 TIMELESSQ9UNS1 1208 aa19.88■□□□□ 0.77
CCDC40-209ENST00000573474 MROH1Q8NDA8 1641 aa19.87■□□□□ 0.77
CCDC40-209ENST00000573474 ARHGEF40Q8TER5 1519 aa19.87■□□□□ 0.77
CCDC40-209ENST00000573474 GGT6Q6P531 493 aa19.87■□□□□ 0.77
CCDC40-209ENST00000573474 AGLP35573 1532 aa19.85■□□□□ 0.77
CCDC40-209ENST00000573474 LMTK2Q8IWU2 1503 aa19.82■□□□□ 0.76
CCDC40-209ENST00000573474 TET3O43151 1660 aa19.81■□□□□ 0.76
CCDC40-209ENST00000573474 WASHC2CQ9Y4E1 1318 aa19.8■□□□□ 0.76
CCDC40-209ENST00000573474 PPP6R1Q9UPN7 881 aa19.8■□□□□ 0.76
CCDC40-209ENST00000573474 TONSLQ96HA7 1378 aa19.79■□□□□ 0.76
CCDC40-209ENST00000573474 RPRD2Q5VT52 1461 aaKnown RBP19.79■□□□□ 0.76
CCDC40-209ENST00000573474 ABCC3O15438 1527 aa19.76■□□□□ 0.75
CCDC40-209ENST00000573474 E9PCH4 1651 aa19.75■□□□□ 0.75
CCDC40-209ENST00000573474 PLA2R1Q13018 1463 aa19.75■□□□□ 0.75
CCDC40-209ENST00000573474 EFCAB6Q5THR3 1501 aa19.75■□□□□ 0.75
CCDC40-209ENST00000573474 PTPRTO14522 1441 aa19.74■□□□□ 0.75
CCDC40-209ENST00000573474 CEP152O94986 1710 aa19.73■□□□□ 0.75
CCDC40-209ENST00000573474 ARID4BQ4LE39 1312 aaPredicted RBP19.73■□□□□ 0.75
CCDC40-209ENST00000573474 ZC3H13Q5T200 1668 aaKnown RBP19.72■□□□□ 0.75
CCDC40-209ENST00000573474 CCDC144AA2RUR9 1427 aa19.72■□□□□ 0.75
CCDC40-209ENST00000573474 SIGLEC1Q9BZZ2 1709 aa19.72■□□□□ 0.75
CCDC40-209ENST00000573474 PPP1R15AO75807 674 aaPredicted RBP19.71■□□□□ 0.75
CCDC40-209ENST00000573474 MLECQ14165 292 aa19.7■□□□□ 0.74
CCDC40-209ENST00000573474 ARHGAP31Q2M1Z3 1444 aa19.69■□□□□ 0.74
CCDC40-209ENST00000573474 L3MBTL2Q969R5 705 aa19.69■□□□□ 0.74
CCDC40-209ENST00000573474 NPATQ14207 1427 aa19.68■□□□□ 0.74
CCDC40-209ENST00000573474 TRPM2O94759 1503 aa19.68■□□□□ 0.74
CCDC40-209ENST00000573474 CAMSAP1Q5T5Y3 1602 aa19.68■□□□□ 0.74
CCDC40-209ENST00000573474 SPHKAPQ2M3C7 1700 aa19.66■□□□□ 0.74
CCDC40-209ENST00000573474 ESF1Q9H501 851 aaKnown RBP19.66■□□□□ 0.74
CCDC40-209ENST00000573474 CNTLNQ9NXG0 1405 aa19.63■□□□□ 0.73
CCDC40-209ENST00000573474 NOS1P29475 1434 aa19.61■□□□□ 0.73
CCDC40-209ENST00000573474 CLTCQ00610 1675 aaKnown RBP19.6■□□□□ 0.73
CCDC40-209ENST00000573474 CLTCL1P53675 1640 aa19.59■□□□□ 0.73
CCDC40-209ENST00000573474 ZMYM3Q14202 1370 aa19.57■□□□□ 0.72
CCDC40-209ENST00000573474 RGL3Q3MIN7 710 aa19.57■□□□□ 0.72
CCDC40-209ENST00000573474 SPATA31E1Q6ZUB1 1445 aa19.57■□□□□ 0.72
CCDC40-209ENST00000573474 FBXO31Q5XUX0 539 aaPredicted RBP19.55■□□□□ 0.72
CCDC40-209ENST00000573474 DCAF11Q8TEB1 546 aa19.55■□□□□ 0.72
CCDC40-209ENST00000573474 SLC52A1Q9NWF4 448 aa19.55■□□□□ 0.72
CCDC40-209ENST00000573474 ERVK-7P63135 1459 aa19.54■□□□□ 0.72
CCDC40-209ENST00000573474 NEURL4Q96JN8 1562 aa19.54■□□□□ 0.72
CCDC40-209ENST00000573474 UGGT1Q9NYU2 1555 aa19.54■□□□□ 0.72
CCDC40-209ENST00000573474 CFAP65Q6ZU64 1925 aaKnown RBP19.54■□□□□ 0.72
CCDC40-209ENST00000573474 PREX1Q8TCU6 1659 aa19.53■□□□□ 0.72
CCDC40-209ENST00000573474 SYNMO15061 1565 aa19.53■□□□□ 0.72
CCDC40-209ENST00000573474 STAC3Q96MF2 364 aa19.52■□□□□ 0.72
CCDC40-209ENST00000573474 KDM2AQ9Y2K7 1162 aa19.52■□□□□ 0.72
CCDC40-209ENST00000573474 UHRF1BP1Q6BDS2 1440 aa19.51■□□□□ 0.71
CCDC40-209ENST00000573474 NBPF8Q3BBV2 869 aa19.51■□□□□ 0.71
CCDC40-209ENST00000573474 MROH2AA6NES4 1674 aa19.51■□□□□ 0.71
CCDC40-209ENST00000573474 IDI1Q13907 227 aa19.5■□□□□ 0.71
CCDC40-209ENST00000573474 PIK3C2BO00750 1634 aa19.5■□□□□ 0.71
CCDC40-209ENST00000573474 SPATA31D1Q6ZQQ2 1576 aa19.49■□□□□ 0.71
CCDC40-209ENST00000573474 KIF1BO60333 1816 aa19.49■□□□□ 0.71
CCDC40-209ENST00000573474 CHGAP10645 457 aaKnown RBP19.49■□□□□ 0.71
CCDC40-209ENST00000573474 ADGRB3O60242 1522 aa19.47■□□□□ 0.71
CCDC40-209ENST00000573474 ZNF316A6NFI3 1004 aaPredicted RBP19.46■□□□□ 0.71
CCDC40-209ENST00000573474 ZNF326Q5BKZ1 582 aaKnown RBP19.46■□□□□ 0.71
CCDC40-209ENST00000573474 RPGRIP1LQ68CZ1 1315 aa19.46■□□□□ 0.71
CCDC40-209ENST00000573474 FER1L4A9Z1Z3 1794 aa19.45■□□□□ 0.7
CCDC40-209ENST00000573474 PRAG1Q86YV5 1406 aa19.44■□□□□ 0.7
CCDC40-209ENST00000573474 TNRQ92752 1358 aa19.44■□□□□ 0.7
CCDC40-209ENST00000573474 CEBPAP49715 358 aaPredicted RBP19.41■□□□□ 0.7
CCDC40-209ENST00000573474 ADAMTSL3P82987 1691 aa19.4■□□□□ 0.7
CCDC40-209ENST00000573474 STAG3Q9UJ98 1225 aa19.4■□□□□ 0.7
CCDC40-209ENST00000573474 RALGAPBQ86X10 1494 aa19.4■□□□□ 0.7
CCDC40-209ENST00000573474 MADDQ8WXG6 1647 aa19.4■□□□□ 0.7
CCDC40-209ENST00000573474 MYOM2P54296 1465 aa19.39■□□□□ 0.69
CCDC40-209ENST00000573474 C3P01024 1663 aa19.39■□□□□ 0.69
CCDC40-209ENST00000573474 TMEM131LA2VDJ0 1609 aa19.38■□□□□ 0.69
CCDC40-209ENST00000573474 EIF4G2P78344 907 aaKnown RBP eCLIP19.36■□□□□ 0.69
CCDC40-209ENST00000573474 IFT172Q9UG01 1749 aa19.35■□□□□ 0.69
CCDC40-209ENST00000573474 VGFO15240 615 aaPredicted RBP19.35■□□□□ 0.69
CCDC40-209ENST00000573474 RIMS1Q86UR5 1692 aaKnown RBP19.35■□□□□ 0.69
CCDC40-209ENST00000573474 NLRP1Q9C000 1473 aa19.35■□□□□ 0.69
CCDC40-209ENST00000573474 ADGRF5Q8IZF2 1346 aa19.34■□□□□ 0.69
CCDC40-209ENST00000573474 PLPPR3Q6T4P5 718 aa19.34■□□□□ 0.69
CCDC40-209ENST00000573474 A2ML1A8K2U0 1454 aa19.34■□□□□ 0.69
CCDC40-209ENST00000573474 NRXN1Q9ULB1 1477 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms