RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 FOXD1Q16676 465 aa14.47□□□□□ -0.09
CLK3-226ENST00000569406 RPRD2Q5VT52 1461 aaKnown RBP14.46□□□□□ -0.1
CLK3-226ENST00000569406 CARMIL2Q6F5E8 1435 aa14.44□□□□□ -0.1
CLK3-226ENST00000569406 PPM1GO15355 546 aaPredicted RBP14.43□□□□□ -0.1
CLK3-226ENST00000569406 ERCC6L2Q5T890 1561 aa14.43□□□□□ -0.1
CLK3-226ENST00000569406 CDC42BPBQ9Y5S2 1711 aa14.43□□□□□ -0.1
CLK3-226ENST00000569406 FBLN2P98095 1184 aa14.43□□□□□ -0.1
CLK3-226ENST00000569406 ARXQ96QS3 562 aa14.41□□□□□ -0.1
CLK3-226ENST00000569406 MBD5Q9P267 1494 aa14.41□□□□□ -0.1
CLK3-226ENST00000569406 PNNQ9H307 717 aaKnown RBP14.4□□□□□ -0.1
CLK3-226ENST00000569406 CANXP27824 592 aaKnown RBP14.4□□□□□ -0.1
CLK3-226ENST00000569406 RRAGDQ9NQL2 400 aaPredicted RBP14.4□□□□□ -0.1
CLK3-226ENST00000569406 PRDM4Q9UKN5 801 aa14.4□□□□□ -0.1
CLK3-226ENST00000569406 SPATA31E1Q6ZUB1 1445 aa14.39□□□□□ -0.11
CLK3-226ENST00000569406 DCAF11Q8TEB1 546 aa14.39□□□□□ -0.11
CLK3-226ENST00000569406 L3MBTL2Q969R5 705 aa14.39□□□□□ -0.11
CLK3-226ENST00000569406 NBPF8Q3BBV2 869 aa14.38□□□□□ -0.11
CLK3-226ENST00000569406 SAMD9LQ8IVG5 1584 aa14.38□□□□□ -0.11
CLK3-226ENST00000569406 SHANK2Q9UPX8 1470 aa14.38□□□□□ -0.11
CLK3-226ENST00000569406 GTF2E1P29083 439 aaPredicted RBP14.37□□□□□ -0.11
CLK3-226ENST00000569406 PREX2Q70Z35 1606 aa14.37□□□□□ -0.11
CLK3-226ENST00000569406 CFDP1Q9UEE9 299 aaPredicted RBP14.37□□□□□ -0.11
CLK3-226ENST00000569406 POLR1AO95602 1720 aaPredicted RBP14.36□□□□□ -0.11
CLK3-226ENST00000569406 ARHGEF5Q12774 1597 aa14.35□□□□□ -0.11
CLK3-226ENST00000569406 TTC37Q6PGP7 1564 aa14.35□□□□□ -0.11
CLK3-226ENST00000569406 KDM5DQ9BY66 1539 aa14.35□□□□□ -0.11
CLK3-226ENST00000569406 ZNF326Q5BKZ1 582 aaKnown RBP14.35□□□□□ -0.11
CLK3-226ENST00000569406 CHMP4AQ9BY43 222 aa14.35□□□□□ -0.11
CLK3-226ENST00000569406 CALD1Q05682 793 aaKnown RBP14.34□□□□□ -0.11
CLK3-226ENST00000569406 PLCD3Q8N3E9 789 aa14.34□□□□□ -0.11
CLK3-226ENST00000569406 HSPA5P11021 654 aaKnown RBP14.33□□□□□ -0.11
CLK3-226ENST00000569406 HNRNPUQ00839 825 aaKnown RBP eCLIP14.33□□□□□ -0.12
CLK3-226ENST00000569406 PTPRGP23470 1445 aa14.32□□□□□ -0.12
CLK3-226ENST00000569406 C9orf84Q5VXU9 1444 aa14.31□□□□□ -0.12
CLK3-226ENST00000569406 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.31□□□□□ -0.123e-12■□□□□ 9.1
CLK3-226ENST00000569406 ANP32CO43423 234 aa14.31□□□□□ -0.12
CLK3-226ENST00000569406 RSPH4AQ5TD94 716 aa14.31□□□□□ -0.12
CLK3-226ENST00000569406 CLASP1Q7Z460 1538 aa14.31□□□□□ -0.12
CLK3-226ENST00000569406 BCORL1Q5H9F3 1711 aa14.31□□□□□ -0.12
CLK3-226ENST00000569406 ANKRD50Q9ULJ7 1429 aa14.31□□□□□ -0.12
CLK3-226ENST00000569406 KIAA1107Q9UPP5 1409 aa14.31□□□□□ -0.12
CLK3-226ENST00000569406 CCER2I3L3R5 266 aa14.3□□□□□ -0.12
CLK3-226ENST00000569406 HAP1P54257 671 aaPredicted RBP14.3□□□□□ -0.12
CLK3-226ENST00000569406 NFKBIBQ15653 356 aa14.3□□□□□ -0.12
CLK3-226ENST00000569406 IPO4Q8TEX9 1081 aaKnown RBP14.3□□□□□ -0.12
CLK3-226ENST00000569406 STAC3Q96MF2 364 aa14.3□□□□□ -0.12
CLK3-226ENST00000569406 POLR3GLQ9BT43 218 aa14.29□□□□□ -0.12
CLK3-226ENST00000569406 BRD2P25440 801 aaKnown RBP14.28□□□□□ -0.12
CLK3-226ENST00000569406 SLC4A1APQ9BWU0 796 aaKnown RBP14.28□□□□□ -0.12
CLK3-226ENST00000569406 PLEKHD1A6NEE1 506 aa14.27□□□□□ -0.12
CLK3-226ENST00000569406 ZHX1Q9UKY1 873 aaPredicted RBP14.27□□□□□ -0.12
CLK3-226ENST00000569406 ABCC2Q92887 1545 aa14.27□□□□□ -0.12
CLK3-226ENST00000569406 ANKRD30AQ9BXX3 1397 aa14.27□□□□□ -0.13
CLK3-226ENST00000569406 ZNF777Q9ULD5 760 aaPredicted RBP14.27□□□□□ -0.13
CLK3-226ENST00000569406 AMER1Q5JTC6 1135 aaPredicted RBP14.26□□□□□ -0.13
CLK3-226ENST00000569406 MAST1Q9Y2H9 1570 aa14.26□□□□□ -0.13
CLK3-226ENST00000569406 ARHGEF12Q9NZN5 1544 aa14.26□□□□□ -0.13
CLK3-226ENST00000569406 KDM5CP41229 1560 aa14.25□□□□□ -0.13
CLK3-226ENST00000569406 ZFP91Q96JP5 570 aaPredicted RBP14.24□□□□□ -0.13
CLK3-226ENST00000569406 PDCL3Q9H2J4 239 aa14.24□□□□□ -0.13
CLK3-226ENST00000569406 SYCP2Q9BX26 1530 aa14.24□□□□□ -0.13
CLK3-226ENST00000569406 HNRNPMP52272 730 aaKnown RBP eCLIP14.24□□□□□ -0.134e-10■■■■■ 39.1
CLK3-226ENST00000569406 CCDC7Q96M83 1385 aa14.24□□□□□ -0.13
CLK3-226ENST00000569406 ZCCHC11Q5TAX3 1644 aaKnown RBP14.23□□□□□ -0.13
CLK3-226ENST00000569406 CNTLNQ9NXG0 1405 aa14.23□□□□□ -0.13
CLK3-226ENST00000569406 UHRF1BP1Q6BDS2 1440 aa14.23□□□□□ -0.13
CLK3-226ENST00000569406 CCDC141Q6ZP82 1450 aa14.22□□□□□ -0.13
CLK3-226ENST00000569406 MYO5CQ9NQX4 1742 aa14.22□□□□□ -0.13
CLK3-226ENST00000569406 VGLL3A8MV65 326 aa14.22□□□□□ -0.13
CLK3-226ENST00000569406 UNC13BO14795 1591 aa14.22□□□□□ -0.13
CLK3-226ENST00000569406 CCDC184Q52MB2 194 aa14.22□□□□□ -0.13
CLK3-226ENST00000569406 PKD2Q13563 968 aa14.22□□□□□ -0.13
CLK3-226ENST00000569406 KIF15Q9NS87 1388 aa14.21□□□□□ -0.13
CLK3-226ENST00000569406 EIF4G2P78344 907 aaKnown RBP eCLIP14.21□□□□□ -0.13
CLK3-226ENST00000569406 PLA2R1Q13018 1463 aa14.21□□□□□ -0.14
CLK3-226ENST00000569406 FAM135AQ9P2D6 1515 aa14.2□□□□□ -0.14
CLK3-226ENST00000569406 PLXNC1O60486 1568 aa14.2□□□□□ -0.14
CLK3-226ENST00000569406 KIF7Q2M1P5 1343 aa14.19□□□□□ -0.14
CLK3-226ENST00000569406 ARID3AQ99856 593 aa14.18□□□□□ -0.14
CLK3-226ENST00000569406 UHRF1BP1LA0JNW5 1464 aa14.18□□□□□ -0.14
CLK3-226ENST00000569406 NUP155O75694 1391 aa14.18□□□□□ -0.14
CLK3-226ENST00000569406 SENP3-EIF4A1A0A087X0R7 540 aa14.18□□□□□ -0.14
CLK3-226ENST00000569406 MAGI2Q86UL8 1455 aa14.17□□□□□ -0.14
CLK3-226ENST00000569406 DHX29Q7Z478 1369 aaKnown RBP14.17□□□□□ -0.14
CLK3-226ENST00000569406 RALGAPBQ86X10 1494 aa14.16□□□□□ -0.14
CLK3-226ENST00000569406 SLC4A3P48751 1232 aa14.16□□□□□ -0.14
CLK3-226ENST00000569406 IQGAP3Q86VI3 1631 aa14.16□□□□□ -0.14
CLK3-226ENST00000569406 ARHGAP5Q13017 1502 aa14.15□□□□□ -0.14
CLK3-226ENST00000569406 FTSJ3Q8IY81 847 aaKnown RBP14.14□□□□□ -0.15
CLK3-226ENST00000569406 ABCC1P33527 1531 aa14.13□□□□□ -0.15
CLK3-226ENST00000569406 DDRGK1Q96HY6 314 aa14.13□□□□□ -0.15
CLK3-226ENST00000569406 TRPM1Q7Z4N2 1603 aa14.13□□□□□ -0.15
CLK3-226ENST00000569406 FRAT2O75474 233 aaPredicted RBP14.13□□□□□ -0.15
CLK3-226ENST00000569406 CLCN1P35523 988 aa14.13□□□□□ -0.15
CLK3-226ENST00000569406 SECISBP2LQ93073 1101 aaKnown RBP14.13□□□□□ -0.15
CLK3-226ENST00000569406 ZNF830Q96NB3 372 aaPredicted RBP14.13□□□□□ -0.15
CLK3-226ENST00000569406 NCLP19338 710 aaKnown RBP14.12□□□□□ -0.15
CLK3-226ENST00000569406 PRKRIP1Q9H875 184 aaPredicted RBP14.12□□□□□ -0.15
CLK3-226ENST00000569406 PRDM10Q9NQV6 1147 aa14.12□□□□□ -0.15
CLK3-226ENST00000569406 E9PCH4 1651 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms