RNA–Protein interactions for RNA: ENST00000567935.1

COMMD4-221, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 502 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-221ENST00000567935 ALKQ9UM73 1620 aa21.59■■□□□ 1.05
COMMD4-221ENST00000567935 KIDINS220Q9ULH0 1771 aa21.59■■□□□ 1.05
COMMD4-221ENST00000567935 CPS1P31327 1500 aa21.59■■□□□ 1.05
COMMD4-221ENST00000567935 RAB3GAP2Q9H2M9 1393 aa21.59■■□□□ 1.05
COMMD4-221ENST00000567935 DHX57Q6P158 1386 aaKnown RBP21.58■■□□□ 1.04
COMMD4-221ENST00000567935 ABCC1P33527 1531 aa21.57■■□□□ 1.04
COMMD4-221ENST00000567935 HFM1A2PYH4 1435 aa21.56■■□□□ 1.04
COMMD4-221ENST00000567935 RGS17Q9UGC6 210 aaPredicted RBP21.56■■□□□ 1.04
COMMD4-221ENST00000567935 PTPRKQ15262 1439 aa21.55■■□□□ 1.04
COMMD4-221ENST00000567935 CDC42BPBQ9Y5S2 1711 aa21.55■■□□□ 1.04
COMMD4-221ENST00000567935 SENP3Q9H4L4 574 aaPredicted RBP21.55■■□□□ 1.04
COMMD4-221ENST00000567935 CLTCQ00610 1675 aaKnown RBP21.54■■□□□ 1.04
COMMD4-221ENST00000567935 SHANK2Q9UPX8 1470 aa21.54■■□□□ 1.04
COMMD4-221ENST00000567935 GPATCH8Q9UKJ3 1502 aaKnown RBP21.54■■□□□ 1.04
COMMD4-221ENST00000567935 ACIN1Q9UKV3 1341 aaKnown RBP21.54■■□□□ 1.04
COMMD4-221ENST00000567935 NEURL4Q96JN8 1562 aa21.51■■□□□ 1.03
COMMD4-221ENST00000567935 DNMT1P26358 1616 aaKnown RBP21.5■■□□□ 1.03
COMMD4-221ENST00000567935 CFDP1Q9UEE9 299 aaPredicted RBP21.48■■□□□ 1.03
COMMD4-221ENST00000567935 ROCK1Q13464 1354 aa21.48■■□□□ 1.03
COMMD4-221ENST00000567935 PREX2Q70Z35 1606 aa21.47■■□□□ 1.03
COMMD4-221ENST00000567935 A2ML1A8K2U0 1454 aa21.47■■□□□ 1.03
COMMD4-221ENST00000567935 GCC2Q8IWJ2 1684 aa21.47■■□□□ 1.03
COMMD4-221ENST00000567935 CDC42BPAQ5VT25 1732 aa21.46■■□□□ 1.03
COMMD4-221ENST00000567935 POLR1AO95602 1720 aaPredicted RBP21.46■■□□□ 1.03
COMMD4-221ENST00000567935 DAPK1P53355 1430 aa21.46■■□□□ 1.03
COMMD4-221ENST00000567935 NAIPQ13075 1403 aa21.46■■□□□ 1.03
COMMD4-221ENST00000567935 CAMSAP2Q08AD1 1489 aa21.45■■□□□ 1.03
COMMD4-221ENST00000567935 VWDEQ8N2E2 1590 aa21.45■■□□□ 1.02
COMMD4-221ENST00000567935 SAMD9LQ8IVG5 1584 aa21.44■■□□□ 1.02
COMMD4-221ENST00000567935 ABCC5O15440 1437 aa21.41■■□□□ 1.02
COMMD4-221ENST00000567935 PLXNC1O60486 1568 aa21.4■■□□□ 1.02
COMMD4-221ENST00000567935 POTEAQ6S8J7 498 aa21.39■■□□□ 1.01
COMMD4-221ENST00000567935 GGT6Q6P531 493 aa21.38■■□□□ 1.01
COMMD4-221ENST00000567935 CROCC2H7BZ55 1655 aa21.37■■□□□ 1.01
COMMD4-221ENST00000567935 ADGRL2O95490 1459 aa21.36■■□□□ 1.01
COMMD4-221ENST00000567935 ADGBQ8N7X0 1667 aa21.36■■□□□ 1.01
COMMD4-221ENST00000567935 SPAG9O60271 1321 aaKnown RBP21.35■■□□□ 1.01
COMMD4-221ENST00000567935 A2MP01023 1474 aa21.35■■□□□ 1.01
COMMD4-221ENST00000567935 ARHGEF5Q12774 1597 aa21.35■■□□□ 1.01
COMMD4-221ENST00000567935 SYCP2Q9BX26 1530 aa21.34■■□□□ 1.01
COMMD4-221ENST00000567935 ATP7AQ04656 1500 aa21.34■■□□□ 1.01
COMMD4-221ENST00000567935 LRRC7Q96NW7 1537 aa21.34■■□□□ 1.01
COMMD4-221ENST00000567935 RNF17Q9BXT8 1623 aaKnown RBP21.33■■□□□ 1.01
COMMD4-221ENST00000567935 ZNF644Q9H582 1327 aaPredicted RBP21.33■■□□□ 1.01
COMMD4-221ENST00000567935 RSPH4AQ5TD94 716 aa21.33■■□□□ 1.01
COMMD4-221ENST00000567935 PLEKHH2Q8IVE3 1493 aa21.32■■□□□ 1
COMMD4-221ENST00000567935 STRCP1A6NGW2 1772 aa21.32■■□□□ 1
COMMD4-221ENST00000567935 SETD1AO15047 1707 aaKnown RBP21.32■■□□□ 1
COMMD4-221ENST00000567935 NPHP4O75161 1426 aaPredicted RBP21.31■■□□□ 1
COMMD4-221ENST00000567935 ANKLE2Q86XL3 938 aa21.3■■□□□ 1
COMMD4-221ENST00000567935 ZNF777Q9ULD5 760 aaPredicted RBP21.3■■□□□ 1
COMMD4-221ENST00000567935 TNRQ92752 1358 aa21.3■■□□□ 1
COMMD4-221ENST00000567935 INO80Q9ULG1 1556 aaPredicted RBP21.3■■□□□ 1
COMMD4-221ENST00000567935 HNRNPMP52272 730 aaKnown RBP eCLIP21.29■■□□□ 1
COMMD4-221ENST00000567935 MED14O60244 1454 aa21.28■■□□□ 1
COMMD4-221ENST00000567935 ANKRD30AQ9BXX3 1397 aa21.28■■□□□ 1
COMMD4-221ENST00000567935 FBXO31Q5XUX0 539 aaPredicted RBP21.28■■□□□ 1
COMMD4-221ENST00000567935 RRP7BPQ9NSQ0 103 aa21.28■■□□□ 1
COMMD4-221ENST00000567935 CHIC2Q9UKJ5 165 aa21.28■■□□□ 1
COMMD4-221ENST00000567935 TIMELESSQ9UNS1 1208 aa21.28■■□□□ 1
COMMD4-221ENST00000567935 KIAA1107Q9UPP5 1409 aa21.27■■□□□ 1
COMMD4-221ENST00000567935 SYNMO15061 1565 aa21.26■□□□□ 0.99
COMMD4-221ENST00000567935 DEPDC5O75140 1603 aa21.25■□□□□ 0.99
COMMD4-221ENST00000567935 CCDC141Q6ZP82 1450 aa21.25■□□□□ 0.99
COMMD4-221ENST00000567935 MBD5Q9P267 1494 aa21.24■□□□□ 0.99
COMMD4-221ENST00000567935 IQGAP1P46940 1657 aa21.24■□□□□ 0.99
COMMD4-221ENST00000567935 TSPY4P0CV99 314 aa21.22■□□□□ 0.99
COMMD4-221ENST00000567935 TSPY10P0CW01 314 aa21.22■□□□□ 0.99
COMMD4-221ENST00000567935 MAST1Q9Y2H9 1570 aa21.22■□□□□ 0.99
COMMD4-221ENST00000567935 THEMISQ8N1K5 641 aaPredicted RBP21.2■□□□□ 0.98
COMMD4-221ENST00000567935 PZPP20742 1482 aa21.2■□□□□ 0.98
COMMD4-221ENST00000567935 UGGT1Q9NYU2 1555 aa21.19■□□□□ 0.98
COMMD4-221ENST00000567935 FAM135AQ9P2D6 1515 aa21.17■□□□□ 0.98
COMMD4-221ENST00000567935 NLRP1Q9C000 1473 aa21.15■□□□□ 0.98
COMMD4-221ENST00000567935 ANKRD50Q9ULJ7 1429 aa21.13■□□□□ 0.97
COMMD4-221ENST00000567935 TRIM52Q96A61 297 aa21.13■□□□□ 0.97
COMMD4-221ENST00000567935 KDM5DQ9BY66 1539 aa21.13■□□□□ 0.97
COMMD4-221ENST00000567935 UPF1Q92900 1129 aaKnown RBP eCLIP21.12■□□□□ 0.977e-14■■■■■ 92.7
COMMD4-221ENST00000567935 FAM135BQ49AJ0 1406 aa21.12■□□□□ 0.97
COMMD4-221ENST00000567935 XIRP1Q702N8 1843 aaKnown RBP21.11■□□□□ 0.97
COMMD4-221ENST00000567935 ZC3H13Q5T200 1668 aaKnown RBP21.11■□□□□ 0.97
COMMD4-221ENST00000567935 MPHOSPH9Q99550 1183 aa21.1■□□□□ 0.97
COMMD4-221ENST00000567935 KIF15Q9NS87 1388 aa21.1■□□□□ 0.97
COMMD4-221ENST00000567935 ZNF316A6NFI3 1004 aaPredicted RBP21.09■□□□□ 0.97
COMMD4-221ENST00000567935 DHX29Q7Z478 1369 aaKnown RBP21.08■□□□□ 0.96
COMMD4-221ENST00000567935 KIF3BO15066 747 aa21.06■□□□□ 0.96
COMMD4-221ENST00000567935 WASHC2CQ9Y4E1 1318 aa21.04■□□□□ 0.96
COMMD4-221ENST00000567935 SIN3AQ96ST3 1273 aa21.04■□□□□ 0.96
COMMD4-221ENST00000567935 RTEL1-TNFRSF6BF6WH68 1400 aa21.04■□□□□ 0.96
COMMD4-221ENST00000567935 ROBO1Q9Y6N7 1651 aa21.02■□□□□ 0.96
COMMD4-221ENST00000567935 TONSLQ96HA7 1378 aa21.02■□□□□ 0.96
COMMD4-221ENST00000567935 DUOX2Q9NRD8 1548 aa21.01■□□□□ 0.95
COMMD4-221ENST00000567935 NEUROD1Q13562 356 aa21.01■□□□□ 0.95
COMMD4-221ENST00000567935 SLC4A1APQ9BWU0 796 aaKnown RBP21■□□□□ 0.95
COMMD4-221ENST00000567935 SRCAPQ6ZRS2 3230 aa21■□□□□ 0.95
COMMD4-221ENST00000567935 ERBINQ96RT1 1412 aa20.98■□□□□ 0.95
COMMD4-221ENST00000567935 SCAF11Q99590 1463 aaKnown RBP20.98■□□□□ 0.95
COMMD4-221ENST00000567935 ANKRD30BQ9BXX2 1392 aa20.97■□□□□ 0.95
COMMD4-221ENST00000567935 UNC13BO14795 1591 aa20.96■□□□□ 0.95
COMMD4-221ENST00000567935 PPP1R15AO75807 674 aaPredicted RBP20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms