RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 NPHP4O75161 1426 aaPredicted RBP27.79■■■□□ 2.04
CLK3-217ENST00000566126 DEPDC5O75140 1603 aa27.78■■■□□ 2.04
CLK3-217ENST00000566126 FBXO31Q5XUX0 539 aaPredicted RBP27.78■■■□□ 2.04
CLK3-217ENST00000566126 ADGBQ8N7X0 1667 aa27.78■■■□□ 2.04
CLK3-217ENST00000566126 POTEAQ6S8J7 498 aa27.77■■■□□ 2.04
CLK3-217ENST00000566126 GPATCH8Q9UKJ3 1502 aaKnown RBP27.77■■■□□ 2.04
CLK3-217ENST00000566126 CCDC18Q5T9S5 1454 aa27.76■■■□□ 2.03
CLK3-217ENST00000566126 KIAA1107Q9UPP5 1409 aa27.75■■■□□ 2.03
CLK3-217ENST00000566126 IQGAP1P46940 1657 aa27.75■■■□□ 2.03
CLK3-217ENST00000566126 SYNMO15061 1565 aa27.73■■■□□ 2.03
CLK3-217ENST00000566126 UBTFP17480 764 aaKnown RBP27.73■■■□□ 2.03
CLK3-217ENST00000566126 EHMT2Q96KQ7 1210 aa27.73■■■□□ 2.03
CLK3-217ENST00000566126 PZPP20742 1482 aa27.71■■■□□ 2.03
CLK3-217ENST00000566126 THEMISQ8N1K5 641 aaPredicted RBP27.7■■■□□ 2.02
CLK3-217ENST00000566126 CASKIN1Q8WXD9 1431 aa27.69■■■□□ 2.02
CLK3-217ENST00000566126 PLEKHH2Q8IVE3 1493 aa27.69■■■□□ 2.02
CLK3-217ENST00000566126 UGGT1Q9NYU2 1555 aa27.69■■■□□ 2.02
CLK3-217ENST00000566126 SETD1AO15047 1707 aaKnown RBP27.68■■■□□ 2.02
CLK3-217ENST00000566126 NLRP1Q9C000 1473 aa27.64■■■□□ 2.02
CLK3-217ENST00000566126 FAM135AQ9P2D6 1515 aa27.64■■■□□ 2.02
CLK3-217ENST00000566126 MIA2Q96PC5 1412 aa27.64■■■□□ 2.02
CLK3-217ENST00000566126 KDM5DQ9BY66 1539 aa27.62■■■□□ 2.01
CLK3-217ENST00000566126 XIRP1Q702N8 1843 aaKnown RBP27.61■■■□□ 2.01
CLK3-217ENST00000566126 CFDP1Q9UEE9 299 aaPredicted RBP27.6■■■□□ 2.01
CLK3-217ENST00000566126 DHX29Q7Z478 1369 aaKnown RBP27.6■■■□□ 2.01
CLK3-217ENST00000566126 ZC3H13Q5T200 1668 aaKnown RBP27.59■■■□□ 2.01
CLK3-217ENST00000566126 KIF3BO15066 747 aa27.54■■■□□ 2
CLK3-217ENST00000566126 MBD5Q9P267 1494 aa27.53■■■□□ 2
CLK3-217ENST00000566126 RTEL1-TNFRSF6BF6WH68 1400 aa27.53■■■□□ 2
CLK3-217ENST00000566126 FAM135BQ49AJ0 1406 aa27.53■■■□□ 2
CLK3-217ENST00000566126 WASHC2CQ9Y4E1 1318 aa27.52■■■□□ 2
CLK3-217ENST00000566126 CCNB3Q8WWL7 1395 aa27.51■■□□□ 1.99
CLK3-217ENST00000566126 ZNF644Q9H582 1327 aaPredicted RBP27.51■■□□□ 1.99
CLK3-217ENST00000566126 FYCO1Q9BQS8 1478 aa27.51■■□□□ 1.99
CLK3-217ENST00000566126 ROBO1Q9Y6N7 1651 aa27.43■■□□□ 1.98
CLK3-217ENST00000566126 UPF1Q92900 1129 aaKnown RBP eCLIP27.42■■□□□ 1.98
CLK3-217ENST00000566126 SCAF11Q99590 1463 aaKnown RBP27.4■■□□□ 1.98
CLK3-217ENST00000566126 UBR1Q8IWV7 1749 aa27.4■■□□□ 1.98
CLK3-217ENST00000566126 TIAM1Q13009 1591 aa27.39■■□□□ 1.98
CLK3-217ENST00000566126 LTKP29376 864 aa27.36■■□□□ 1.97
CLK3-217ENST00000566126 ERVK-7P63135 1459 aa27.35■■□□□ 1.97
CLK3-217ENST00000566126 NCOA2Q15596 1464 aa27.34■■□□□ 1.97
CLK3-217ENST00000566126 SRCAPQ6ZRS2 3230 aa27.33■■□□□ 1.97
CLK3-217ENST00000566126 ARHGAP23Q9P227 1491 aa27.33■■□□□ 1.97
CLK3-217ENST00000566126 ABCC3O15438 1527 aa27.32■■□□□ 1.96
CLK3-217ENST00000566126 SLIT1O75093 1534 aa27.31■■□□□ 1.96
CLK3-217ENST00000566126 TMEM94Q12767 1356 aa27.31■■□□□ 1.96
CLK3-217ENST00000566126 CCDC141Q6ZP82 1450 aa27.31■■□□□ 1.96
CLK3-217ENST00000566126 CFAP65Q6ZU64 1925 aaKnown RBP27.29■■□□□ 1.96
CLK3-217ENST00000566126 TXNDC2Q86VQ3 553 aa27.29■■□□□ 1.96
CLK3-217ENST00000566126 MTUS2Q5JR59 1369 aa27.29■■□□□ 1.96
CLK3-217ENST00000566126 MAP3K1Q13233 1512 aa27.29■■□□□ 1.96
CLK3-217ENST00000566126 PHLPP1O60346 1717 aa27.27■■□□□ 1.96
CLK3-217ENST00000566126 JCADQ9P266 1359 aa27.25■■□□□ 1.95
CLK3-217ENST00000566126 LRRC9Q6ZRR7 1453 aa27.25■■□□□ 1.95
CLK3-217ENST00000566126 CHIC1Q5VXU3 224 aa27.24■■□□□ 1.95
CLK3-217ENST00000566126 TRIM52Q96A61 297 aa27.23■■□□□ 1.95
CLK3-217ENST00000566126 LRP6O75581 1613 aa27.21■■□□□ 1.95
CLK3-217ENST00000566126 RBM33Q96EV2 1170 aaKnown RBP27.21■■□□□ 1.95
CLK3-217ENST00000566126 CAMSAP2Q08AD1 1489 aa27.19■■□□□ 1.94
CLK3-217ENST00000566126 CEP152O94986 1710 aa27.19■■□□□ 1.94
CLK3-217ENST00000566126 MROH1Q8NDA8 1641 aa27.19■■□□□ 1.94
CLK3-217ENST00000566126 COL16A1Q07092 1604 aaPredicted RBP27.17■■□□□ 1.94
CLK3-217ENST00000566126 KCNA6P17658 529 aa27.17■■□□□ 1.94
CLK3-217ENST00000566126 RSPH4AQ5TD94 716 aa27.17■■□□□ 1.94
CLK3-217ENST00000566126 EHBP1L1Q8N3D4 1523 aa27.16■■□□□ 1.94
CLK3-217ENST00000566126 PROSER2Q86WR7 435 aaPredicted RBP27.16■■□□□ 1.94
CLK3-217ENST00000566126 EID1Q9Y6B2 187 aa27.16■■□□□ 1.94
CLK3-217ENST00000566126 CEP162Q5TB80 1403 aa27.16■■□□□ 1.94
CLK3-217ENST00000566126 ZNF772Q68DY9 489 aaPredicted RBP27.15■■□□□ 1.94
CLK3-217ENST00000566126 PRDM15P57071 1507 aaPredicted RBP27.15■■□□□ 1.94
CLK3-217ENST00000566126 ARHGEF5Q12774 1597 aa27.13■■□□□ 1.93
CLK3-217ENST00000566126 TMEM2Q9UHN6 1383 aa27.12■■□□□ 1.93
CLK3-217ENST00000566126 SLAIN2Q9P270 581 aa27.12■■□□□ 1.93
CLK3-217ENST00000566126 EIF2AK4Q9P2K8 1649 aaKnown RBP27.12■■□□□ 1.93
CLK3-217ENST00000566126 PIK3C2BO00750 1634 aa27.11■■□□□ 1.93
CLK3-217ENST00000566126 TET3O43151 1660 aa27.11■■□□□ 1.93
CLK3-217ENST00000566126 NWD1Q149M9 1564 aa27.09■■□□□ 1.93
CLK3-217ENST00000566126 SPATA31A6Q5VVP1 1343 aa27.09■■□□□ 1.93
CLK3-217ENST00000566126 NKTRP30414 1462 aaKnown RBP27.08■■□□□ 1.93
CLK3-217ENST00000566126 MSH6P52701 1360 aa27.08■■□□□ 1.93
CLK3-217ENST00000566126 RXRBP28702 533 aa27.07■■□□□ 1.92
CLK3-217ENST00000566126 MEX3CQ5U5Q3 659 aaKnown RBP27.07■■□□□ 1.92
CLK3-217ENST00000566126 SLC26A8Q96RN1 970 aa27.07■■□□□ 1.92
CLK3-217ENST00000566126 CDK12Q9NYV4 1490 aaPredicted RBP27.06■■□□□ 1.92
CLK3-217ENST00000566126 TSPY4P0CV99 314 aa27.06■■□□□ 1.92
CLK3-217ENST00000566126 TSPY10P0CW01 314 aa27.06■■□□□ 1.92
CLK3-217ENST00000566126 FGD6Q6ZV73 1430 aa27.06■■□□□ 1.92
CLK3-217ENST00000566126 SHPRHQ149N8 1683 aa27.03■■□□□ 1.92
CLK3-217ENST00000566126 ARHGAP31Q2M1Z3 1444 aa27.03■■□□□ 1.92
CLK3-217ENST00000566126 MAST1Q9Y2H9 1570 aa27.02■■□□□ 1.92
CLK3-217ENST00000566126 KDM5AP29375 1690 aaKnown RBP27.01■■□□□ 1.91
CLK3-217ENST00000566126 EFCAB6Q5THR3 1501 aa26.99■■□□□ 1.91
CLK3-217ENST00000566126 AHDC1Q5TGY3 1603 aaPredicted RBP26.95■■□□□ 1.91
CLK3-217ENST00000566126 STAG3Q9UJ98 1225 aa26.95■■□□□ 1.9
CLK3-217ENST00000566126 CHD2O14647 1828 aaKnown RBP26.93■■□□□ 1.9
CLK3-217ENST00000566126 RGS12O14924 1447 aa26.9■■□□□ 1.9
CLK3-217ENST00000566126 IDI1Q13907 227 aa26.9■■□□□ 1.9
CLK3-217ENST00000566126 DIP2AQ14689 1571 aa26.89■■□□□ 1.9
CLK3-217ENST00000566126 AFF2P51816 1311 aa26.89■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms