RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 YEATS2Q9ULM3 1422 aa44.9■■■■■ 4.78
CTCF-203ENST00000566078 IQGAP3Q86VI3 1631 aa44.9■■■■■ 4.78
CTCF-203ENST00000566078 NUP155O75694 1391 aa44.89■■■■■ 4.78
CTCF-203ENST00000566078 MPHOSPH9Q99550 1183 aa44.89■■■■■ 4.78
CTCF-203ENST00000566078 BCORL1Q5H9F3 1711 aa44.88■■■■■ 4.77
CTCF-203ENST00000566078 FAM135AQ9P2D6 1515 aa44.84■■■■■ 4.77
CTCF-203ENST00000566078 SLC4A1APQ9BWU0 796 aaKnown RBP44.82■■■■■ 4.77
CTCF-203ENST00000566078 RNF17Q9BXT8 1623 aaKnown RBP44.82■■■■■ 4.77
CTCF-203ENST00000566078 ARHGEF40Q8TER5 1519 aa44.8■■■■■ 4.76
CTCF-203ENST00000566078 MROH1Q8NDA8 1641 aa44.79■■■■■ 4.76
CTCF-203ENST00000566078 PRDM15P57071 1507 aaPredicted RBP44.76■■■■■ 4.76
CTCF-203ENST00000566078 GRWD1Q9BQ67 446 aaKnown RBP eCLIP44.76■■■■■ 4.766e-7■■□□□ 14.2
CTCF-203ENST00000566078 KIF3BO15066 747 aa44.74■■■■■ 4.75
CTCF-203ENST00000566078 REREQ9P2R6 1566 aa44.73■■■■■ 4.75
CTCF-203ENST00000566078 ATP10AO60312 1499 aa44.72■■■■■ 4.75
CTCF-203ENST00000566078 VWDEQ8N2E2 1590 aa44.69■■■■■ 4.74
CTCF-203ENST00000566078 FOXD1Q16676 465 aa44.66■■■■■ 4.74
CTCF-203ENST00000566078 CEP152O94986 1710 aa44.65■■■■■ 4.74
CTCF-203ENST00000566078 TET3O43151 1660 aa44.63■■■■■ 4.74
CTCF-203ENST00000566078 PKD2Q13563 968 aa44.63■■■■■ 4.73
CTCF-203ENST00000566078 SIGLEC1Q9BZZ2 1709 aa44.63■■■■■ 4.73
CTCF-203ENST00000566078 KANK1Q14678 1352 aa44.62■■■■■ 4.73
CTCF-203ENST00000566078 SIN3AQ96ST3 1273 aa44.59■■■■■ 4.73
CTCF-203ENST00000566078 E9PCH4 1651 aa44.57■■■■■ 4.72
CTCF-203ENST00000566078 ANKRD30BQ9BXX2 1392 aa44.56■■■■■ 4.72
CTCF-203ENST00000566078 AGLP35573 1532 aa44.55■■■■■ 4.72
CTCF-203ENST00000566078 NEUROD1Q13562 356 aa44.51■■■■■ 4.72
CTCF-203ENST00000566078 ZC3H13Q5T200 1668 aaKnown RBP44.49■■■■■ 4.71
CTCF-203ENST00000566078 LMTK2Q8IWU2 1503 aa44.48■■■■■ 4.71
CTCF-203ENST00000566078 GGT6Q6P531 493 aa44.47■■■■■ 4.71
CTCF-203ENST00000566078 EFCAB6Q5THR3 1501 aa44.45■■■■■ 4.71
CTCF-203ENST00000566078 ABCC3O15438 1527 aa44.43■■■■■ 4.7
CTCF-203ENST00000566078 CAMSAP1Q5T5Y3 1602 aa44.42■■■■■ 4.7
CTCF-203ENST00000566078 SPHKAPQ2M3C7 1700 aa44.42■■■■■ 4.7
CTCF-203ENST00000566078 RPRD2Q5VT52 1461 aaKnown RBP44.38■■■■■ 4.69
CTCF-203ENST00000566078 TONSLQ96HA7 1378 aa44.31■■■■■ 4.68
CTCF-203ENST00000566078 WASHC2CQ9Y4E1 1318 aa44.3■■■■■ 4.68
CTCF-203ENST00000566078 CFAP65Q6ZU64 1925 aaKnown RBP44.29■■■■■ 4.68
CTCF-203ENST00000566078 PLA2R1Q13018 1463 aa44.29■■■■■ 4.68
CTCF-203ENST00000566078 CLTCQ00610 1675 aaKnown RBP44.27■■■■■ 4.68
CTCF-203ENST00000566078 TIMELESSQ9UNS1 1208 aa44.27■■■■■ 4.68
CTCF-203ENST00000566078 TRPM2O94759 1503 aa44.26■■■■■ 4.68
CTCF-203ENST00000566078 CCDC144AA2RUR9 1427 aa44.21■■■■■ 4.67
CTCF-203ENST00000566078 PTPRTO14522 1441 aa44.19■■■■■ 4.67
CTCF-203ENST00000566078 NPATQ14207 1427 aa44.18■■■■■ 4.66
CTCF-203ENST00000566078 ARID4BQ4LE39 1312 aaPredicted RBP44.17■■■■■ 4.66
CTCF-203ENST00000566078 MLECQ14165 292 aa44.16■■■■■ 4.66
CTCF-203ENST00000566078 CLTCL1P53675 1640 aa44.15■■■■■ 4.66
CTCF-203ENST00000566078 PPP6R1Q9UPN7 881 aa44.13■■■■■ 4.66
CTCF-203ENST00000566078 ARHGAP31Q2M1Z3 1444 aa44.12■■■■■ 4.65
CTCF-203ENST00000566078 PREX1Q8TCU6 1659 aa44.09■■■■■ 4.65
CTCF-203ENST00000566078 KIF1BO60333 1816 aa44.06■■■■■ 4.64
CTCF-203ENST00000566078 UGGT1Q9NYU2 1555 aa44.02■■■■■ 4.64
CTCF-203ENST00000566078 FER1L4A9Z1Z3 1794 aa44.02■■■■■ 4.64
CTCF-203ENST00000566078 L3MBTL2Q969R5 705 aa44.01■■■■■ 4.64
CTCF-203ENST00000566078 CNTLNQ9NXG0 1405 aa44■■■■■ 4.63
CTCF-203ENST00000566078 MROH2AA6NES4 1674 aa44■■■■■ 4.63
CTCF-203ENST00000566078 SYNMO15061 1565 aa43.99■■■■■ 4.63
CTCF-203ENST00000566078 PPP1R15AO75807 674 aaPredicted RBP43.99■■■■■ 4.63
CTCF-203ENST00000566078 NOS1P29475 1434 aa43.97■■■■■ 4.63
CTCF-203ENST00000566078 ESF1Q9H501 851 aaKnown RBP43.95■■■■■ 4.63
CTCF-203ENST00000566078 PIK3C2BO00750 1634 aa43.94■■■■■ 4.63
CTCF-203ENST00000566078 ERVK-7P63135 1459 aa43.88■■■■■ 4.62
CTCF-203ENST00000566078 SPATA31E1Q6ZUB1 1445 aa43.88■■■■■ 4.61
CTCF-203ENST00000566078 NEURL4Q96JN8 1562 aa43.87■■■■■ 4.61
CTCF-203ENST00000566078 SPATA31D1Q6ZQQ2 1576 aa43.85■■■■■ 4.61
CTCF-203ENST00000566078 ZMYM3Q14202 1370 aa43.81■■■■■ 4.6
CTCF-203ENST00000566078 ADGRB3O60242 1522 aa43.8■■■■■ 4.6
CTCF-203ENST00000566078 C3P01024 1663 aa43.8■■■■■ 4.6
CTCF-203ENST00000566078 RGL3Q3MIN7 710 aa43.79■■■■■ 4.6
CTCF-203ENST00000566078 MADDQ8WXG6 1647 aa43.77■■■■■ 4.6
CTCF-203ENST00000566078 FBXO31Q5XUX0 539 aaPredicted RBP43.77■■■■■ 4.6
CTCF-203ENST00000566078 IFT172Q9UG01 1749 aa43.76■■■■■ 4.6
CTCF-203ENST00000566078 MYO5BQ9ULV0 1848 aa43.76■■■■■ 4.6
CTCF-203ENST00000566078 RIMS1Q86UR5 1692 aaKnown RBP43.74■■■■■ 4.59
CTCF-203ENST00000566078 ADAMTSL3P82987 1691 aa43.73■■■■■ 4.59
CTCF-203ENST00000566078 DCAF11Q8TEB1 546 aa43.73■■■■■ 4.59
CTCF-203ENST00000566078 UHRF1BP1Q6BDS2 1440 aa43.69■■■■■ 4.58
CTCF-203ENST00000566078 NBPF8Q3BBV2 869 aa43.66■■■■■ 4.58
CTCF-203ENST00000566078 KDM2AQ9Y2K7 1162 aa43.66■■■■■ 4.58
CTCF-203ENST00000566078 PPLO60437 1756 aa43.66■■■■■ 4.58
CTCF-203ENST00000566078 SLC52A1Q9NWF4 448 aa43.66■■■■■ 4.58
CTCF-203ENST00000566078 TMEM131LA2VDJ0 1609 aa43.65■■■■■ 4.58
CTCF-203ENST00000566078 CHGAP10645 457 aaKnown RBP43.62■■■■■ 4.57
CTCF-203ENST00000566078 ZNF326Q5BKZ1 582 aaKnown RBP43.62■■■■■ 4.57
CTCF-203ENST00000566078 IDI1Q13907 227 aa43.61■■■■■ 4.57
CTCF-203ENST00000566078 TRPM1Q7Z4N2 1603 aa43.59■■■■■ 4.57
CTCF-203ENST00000566078 PRAG1Q86YV5 1406 aa43.59■■■■■ 4.57
CTCF-203ENST00000566078 TNRQ92752 1358 aa43.54■■■■■ 4.56
CTCF-203ENST00000566078 RALGAPBQ86X10 1494 aa43.54■■■■■ 4.56
CTCF-203ENST00000566078 MYOM2P54296 1465 aa43.52■■■■■ 4.56
CTCF-203ENST00000566078 CEBPAP49715 358 aaPredicted RBP43.5■■■■■ 4.55
CTCF-203ENST00000566078 NEXMIFQ5QGS0 1516 aa43.49■■■■■ 4.55
CTCF-203ENST00000566078 KDM5AP29375 1690 aaKnown RBP43.47■■■■■ 4.55
CTCF-203ENST00000566078 ZNF316A6NFI3 1004 aaPredicted RBP43.45■■■■■ 4.55
CTCF-203ENST00000566078 STAC3Q96MF2 364 aa43.45■■■■■ 4.55
CTCF-203ENST00000566078 UBR1Q8IWV7 1749 aa43.44■■■■■ 4.54
CTCF-203ENST00000566078 PLPPR3Q6T4P5 718 aa43.43■■■■■ 4.54
CTCF-203ENST00000566078 KIAA1210Q9ULL0 1709 aa43.41■■■■■ 4.54
CTCF-203ENST00000566078 RPGRIP1LQ68CZ1 1315 aa43.41■■■■■ 4.54
Retrieved 100 of 20,778 RNA–protein pairs in 170 ms