RNA–Protein interactions for RNA: ENST00000565834.1

COMMD4-213, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-213ENST00000565834 NUP155O75694 1391 aa27.51■■□□□ 1.99
COMMD4-213ENST00000565834 YEATS2Q9ULM3 1422 aa27.51■■□□□ 1.99
COMMD4-213ENST00000565834 DEPDC5O75140 1603 aa27.49■■□□□ 1.99
COMMD4-213ENST00000565834 SLC4A1APQ9BWU0 796 aaKnown RBP27.48■■□□□ 1.99
COMMD4-213ENST00000565834 IQGAP3Q86VI3 1631 aa27.46■■□□□ 1.99
COMMD4-213ENST00000565834 BCORL1Q5H9F3 1711 aa27.45■■□□□ 1.98
COMMD4-213ENST00000565834 FAM135AQ9P2D6 1515 aa27.45■■□□□ 1.98
COMMD4-213ENST00000565834 KIF3BO15066 747 aa27.44■■□□□ 1.98
COMMD4-213ENST00000565834 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.44■■□□□ 1.98
COMMD4-213ENST00000565834 ARHGEF40Q8TER5 1519 aa27.42■■□□□ 1.98
COMMD4-213ENST00000565834 RNF17Q9BXT8 1623 aaKnown RBP27.42■■□□□ 1.98
COMMD4-213ENST00000565834 ATP10AO60312 1499 aa27.42■■□□□ 1.98
COMMD4-213ENST00000565834 PRDM15P57071 1507 aaPredicted RBP27.4■■□□□ 1.98
COMMD4-213ENST00000565834 REREQ9P2R6 1566 aa27.39■■□□□ 1.98
COMMD4-213ENST00000565834 MROH1Q8NDA8 1641 aa27.39■■□□□ 1.98
COMMD4-213ENST00000565834 KANK1Q14678 1352 aa27.37■■□□□ 1.97
COMMD4-213ENST00000565834 PKD2Q13563 968 aa27.36■■□□□ 1.97
COMMD4-213ENST00000565834 VWDEQ8N2E2 1590 aa27.35■■□□□ 1.97
COMMD4-213ENST00000565834 FOXD1Q16676 465 aa27.34■■□□□ 1.97
COMMD4-213ENST00000565834 SIN3AQ96ST3 1273 aa27.3■■□□□ 1.96
COMMD4-213ENST00000565834 TET3O43151 1660 aa27.3■■□□□ 1.96
COMMD4-213ENST00000565834 AGLP35573 1532 aa27.3■■□□□ 1.96
COMMD4-213ENST00000565834 ANKRD30BQ9BXX2 1392 aa27.3■■□□□ 1.96
COMMD4-213ENST00000565834 CEP152O94986 1710 aa27.28■■□□□ 1.96
COMMD4-213ENST00000565834 GGT6Q6P531 493 aa27.27■■□□□ 1.96
COMMD4-213ENST00000565834 NEUROD1Q13562 356 aa27.27■■□□□ 1.96
COMMD4-213ENST00000565834 SIGLEC1Q9BZZ2 1709 aa27.26■■□□□ 1.95
COMMD4-213ENST00000565834 LMTK2Q8IWU2 1503 aa27.24■■□□□ 1.95
COMMD4-213ENST00000565834 E9PCH4 1651 aa27.24■■□□□ 1.95
COMMD4-213ENST00000565834 ZC3H13Q5T200 1668 aaKnown RBP27.22■■□□□ 1.95
COMMD4-213ENST00000565834 ABCC3O15438 1527 aa27.2■■□□□ 1.94
COMMD4-213ENST00000565834 EFCAB6Q5THR3 1501 aa27.2■■□□□ 1.94
COMMD4-213ENST00000565834 WASHC2CQ9Y4E1 1318 aa27.17■■□□□ 1.94
COMMD4-213ENST00000565834 RPRD2Q5VT52 1461 aaKnown RBP27.17■■□□□ 1.94
COMMD4-213ENST00000565834 TIMELESSQ9UNS1 1208 aa27.17■■□□□ 1.94
COMMD4-213ENST00000565834 CAMSAP1Q5T5Y3 1602 aa27.16■■□□□ 1.94
COMMD4-213ENST00000565834 SPHKAPQ2M3C7 1700 aa27.15■■□□□ 1.94
COMMD4-213ENST00000565834 TONSLQ96HA7 1378 aa27.15■■□□□ 1.94
COMMD4-213ENST00000565834 PLA2R1Q13018 1463 aa27.12■■□□□ 1.93
COMMD4-213ENST00000565834 PPP6R1Q9UPN7 881 aa27.11■■□□□ 1.93
COMMD4-213ENST00000565834 ARID4BQ4LE39 1312 aaPredicted RBP27.1■■□□□ 1.93
COMMD4-213ENST00000565834 CCDC144AA2RUR9 1427 aa27.09■■□□□ 1.93
COMMD4-213ENST00000565834 TRPM2O94759 1503 aa27.09■■□□□ 1.93
COMMD4-213ENST00000565834 PTPRTO14522 1441 aa27.08■■□□□ 1.93
COMMD4-213ENST00000565834 MLECQ14165 292 aa27.08■■□□□ 1.92
COMMD4-213ENST00000565834 NPATQ14207 1427 aa27.07■■□□□ 1.92
COMMD4-213ENST00000565834 CLTCQ00610 1675 aaKnown RBP27.06■■□□□ 1.92
COMMD4-213ENST00000565834 CFAP65Q6ZU64 1925 aaKnown RBP27.06■■□□□ 1.92
COMMD4-213ENST00000565834 ARHGAP31Q2M1Z3 1444 aa27.05■■□□□ 1.92
COMMD4-213ENST00000565834 CLTCL1P53675 1640 aa27■■□□□ 1.91
COMMD4-213ENST00000565834 ESF1Q9H501 851 aaKnown RBP26.98■■□□□ 1.91
COMMD4-213ENST00000565834 CNTLNQ9NXG0 1405 aa26.97■■□□□ 1.91
COMMD4-213ENST00000565834 L3MBTL2Q969R5 705 aa26.97■■□□□ 1.91
COMMD4-213ENST00000565834 PPP1R15AO75807 674 aaPredicted RBP26.96■■□□□ 1.91
COMMD4-213ENST00000565834 PREX1Q8TCU6 1659 aa26.96■■□□□ 1.91
COMMD4-213ENST00000565834 NOS1P29475 1434 aa26.95■■□□□ 1.9
COMMD4-213ENST00000565834 UGGT1Q9NYU2 1555 aa26.92■■□□□ 1.9
COMMD4-213ENST00000565834 MROH2AA6NES4 1674 aa26.92■■□□□ 1.9
COMMD4-213ENST00000565834 KIF1BO60333 1816 aa26.92■■□□□ 1.9
COMMD4-213ENST00000565834 FER1L4A9Z1Z3 1794 aa26.91■■□□□ 1.9
COMMD4-213ENST00000565834 SYNMO15061 1565 aa26.91■■□□□ 1.9
COMMD4-213ENST00000565834 ERVK-7P63135 1459 aa26.89■■□□□ 1.89
COMMD4-213ENST00000565834 PIK3C2BO00750 1634 aa26.88■■□□□ 1.89
COMMD4-213ENST00000565834 SPATA31E1Q6ZUB1 1445 aa26.88■■□□□ 1.89
COMMD4-213ENST00000565834 ZMYM3Q14202 1370 aa26.86■■□□□ 1.89
COMMD4-213ENST00000565834 NEURL4Q96JN8 1562 aa26.86■■□□□ 1.89
COMMD4-213ENST00000565834 SPATA31D1Q6ZQQ2 1576 aa26.85■■□□□ 1.89
COMMD4-213ENST00000565834 RGL3Q3MIN7 710 aa26.85■■□□□ 1.89
COMMD4-213ENST00000565834 FBXO31Q5XUX0 539 aaPredicted RBP26.83■■□□□ 1.89
COMMD4-213ENST00000565834 DCAF11Q8TEB1 546 aa26.8■■□□□ 1.88
COMMD4-213ENST00000565834 SLC52A1Q9NWF4 448 aa26.8■■□□□ 1.88
COMMD4-213ENST00000565834 ADGRB3O60242 1522 aa26.8■■□□□ 1.88
COMMD4-213ENST00000565834 C3P01024 1663 aa26.78■■□□□ 1.88
COMMD4-213ENST00000565834 MADDQ8WXG6 1647 aa26.78■■□□□ 1.88
COMMD4-213ENST00000565834 ADAMTSL3P82987 1691 aa26.77■■□□□ 1.88
COMMD4-213ENST00000565834 UHRF1BP1Q6BDS2 1440 aa26.76■■□□□ 1.87
COMMD4-213ENST00000565834 KDM2AQ9Y2K7 1162 aa26.76■■□□□ 1.87
COMMD4-213ENST00000565834 CHGAP10645 457 aaKnown RBP26.75■■□□□ 1.87
COMMD4-213ENST00000565834 IDI1Q13907 227 aa26.75■■□□□ 1.87
COMMD4-213ENST00000565834 RIMS1Q86UR5 1692 aaKnown RBP26.75■■□□□ 1.87
COMMD4-213ENST00000565834 NBPF8Q3BBV2 869 aa26.74■■□□□ 1.87
COMMD4-213ENST00000565834 ZNF326Q5BKZ1 582 aaKnown RBP26.73■■□□□ 1.87
COMMD4-213ENST00000565834 IFT172Q9UG01 1749 aa26.72■■□□□ 1.87
COMMD4-213ENST00000565834 MYO5BQ9ULV0 1848 aa26.71■■□□□ 1.87
COMMD4-213ENST00000565834 TMEM131LA2VDJ0 1609 aa26.7■■□□□ 1.87
COMMD4-213ENST00000565834 TNRQ92752 1358 aa26.7■■□□□ 1.87
COMMD4-213ENST00000565834 STAC3Q96MF2 364 aa26.7■■□□□ 1.86
COMMD4-213ENST00000565834 PRAG1Q86YV5 1406 aa26.69■■□□□ 1.86
COMMD4-213ENST00000565834 PPLO60437 1756 aa26.68■■□□□ 1.86
COMMD4-213ENST00000565834 CEBPAP49715 358 aaPredicted RBP26.67■■□□□ 1.86
COMMD4-213ENST00000565834 MYOM2P54296 1465 aa26.65■■□□□ 1.86
COMMD4-213ENST00000565834 RALGAPBQ86X10 1494 aa26.65■■□□□ 1.86
COMMD4-213ENST00000565834 RPGRIP1LQ68CZ1 1315 aa26.65■■□□□ 1.86
COMMD4-213ENST00000565834 TRPM1Q7Z4N2 1603 aa26.64■■□□□ 1.85
COMMD4-213ENST00000565834 STAG3Q9UJ98 1225 aa26.63■■□□□ 1.85
COMMD4-213ENST00000565834 ZNF316A6NFI3 1004 aaPredicted RBP26.61■■□□□ 1.85
COMMD4-213ENST00000565834 PLPPR3Q6T4P5 718 aa26.61■■□□□ 1.85
COMMD4-213ENST00000565834 NEXMIFQ5QGS0 1516 aa26.61■■□□□ 1.85
COMMD4-213ENST00000565834 NLRP1Q9C000 1473 aa26.6■■□□□ 1.85
COMMD4-213ENST00000565834 KDM5AP29375 1690 aaKnown RBP26.6■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms