RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 TRIM52Q96A61 297 aa18.92■□□□□ 0.62
CLK3-214ENST00000564096 CCER1Q8TC90 406 aaPredicted RBP18.91■□□□□ 0.62
CLK3-214ENST00000564096 DHX57Q6P158 1386 aaKnown RBP18.91■□□□□ 0.62
CLK3-214ENST00000564096 BCORL1Q5H9F3 1711 aa18.91■□□□□ 0.62
CLK3-214ENST00000564096 PRDM15P57071 1507 aaPredicted RBP18.9■□□□□ 0.62
CLK3-214ENST00000564096 DEPDC5O75140 1603 aa18.89■□□□□ 0.62
CLK3-214ENST00000564096 RNF17Q9BXT8 1623 aaKnown RBP18.89■□□□□ 0.62
CLK3-214ENST00000564096 NUP155O75694 1391 aa18.87■□□□□ 0.61
CLK3-214ENST00000564096 AGLP35573 1532 aa18.87■□□□□ 0.61
CLK3-214ENST00000564096 KANK1Q14678 1352 aa18.87■□□□□ 0.61
CLK3-214ENST00000564096 IQGAP3Q86VI3 1631 aa18.85■□□□□ 0.61
CLK3-214ENST00000564096 CLSPNQ9HAW4 1339 aa18.85■□□□□ 0.61
CLK3-214ENST00000564096 FAM135AQ9P2D6 1515 aa18.84■□□□□ 0.61
CLK3-214ENST00000564096 KIF3BO15066 747 aa18.84■□□□□ 0.61
CLK3-214ENST00000564096 PZPP20742 1482 aa18.84■□□□□ 0.61
CLK3-214ENST00000564096 MROH1Q8NDA8 1641 aa18.82■□□□□ 0.6
CLK3-214ENST00000564096 SLC4A1APQ9BWU0 796 aaKnown RBP18.81■□□□□ 0.6
CLK3-214ENST00000564096 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.8■□□□□ 0.63e-9■■■■■ 27.4
CLK3-214ENST00000564096 VWDEQ8N2E2 1590 aa18.8■□□□□ 0.6
CLK3-214ENST00000564096 ZC3H13Q5T200 1668 aaKnown RBP18.79■□□□□ 0.6
CLK3-214ENST00000564096 MPHOSPH9Q99550 1183 aa18.79■□□□□ 0.6
CLK3-214ENST00000564096 LMTK2Q8IWU2 1503 aa18.78■□□□□ 0.6
CLK3-214ENST00000564096 TET3O43151 1660 aa18.76■□□□□ 0.59
CLK3-214ENST00000564096 ABCC3O15438 1527 aa18.74■□□□□ 0.59
CLK3-214ENST00000564096 GGT6Q6P531 493 aa18.74■□□□□ 0.59
CLK3-214ENST00000564096 EFCAB6Q5THR3 1501 aa18.74■□□□□ 0.59
CLK3-214ENST00000564096 PPP6R1Q9UPN7 881 aa18.73■□□□□ 0.59
CLK3-214ENST00000564096 ARID4BQ4LE39 1312 aaPredicted RBP18.73■□□□□ 0.59
CLK3-214ENST00000564096 ZEB1P37275 1124 aaPredicted RBP18.72■□□□□ 0.59
CLK3-214ENST00000564096 PKD2Q13563 968 aa18.72■□□□□ 0.59
CLK3-214ENST00000564096 SIGLEC1Q9BZZ2 1709 aa18.71■□□□□ 0.59
CLK3-214ENST00000564096 WASHC2CQ9Y4E1 1318 aa18.71■□□□□ 0.59
CLK3-214ENST00000564096 RPRD2Q5VT52 1461 aaKnown RBP18.71■□□□□ 0.59
CLK3-214ENST00000564096 CEP152O94986 1710 aa18.7■□□□□ 0.58
CLK3-214ENST00000564096 CAMSAP1Q5T5Y3 1602 aa18.69■□□□□ 0.58
CLK3-214ENST00000564096 ESF1Q9H501 851 aaKnown RBP18.67■□□□□ 0.58
CLK3-214ENST00000564096 CNTLNQ9NXG0 1405 aa18.66■□□□□ 0.58
CLK3-214ENST00000564096 E9PCH4 1651 aa18.66■□□□□ 0.58
CLK3-214ENST00000564096 ANKRD30BQ9BXX2 1392 aa18.66■□□□□ 0.58
CLK3-214ENST00000564096 ARHGAP31Q2M1Z3 1444 aa18.65■□□□□ 0.58
CLK3-214ENST00000564096 TRPM2O94759 1503 aa18.64■□□□□ 0.57
CLK3-214ENST00000564096 MLECQ14165 292 aa18.63■□□□□ 0.57
CLK3-214ENST00000564096 FOXD1Q16676 465 aa18.63■□□□□ 0.57
CLK3-214ENST00000564096 CCDC144AA2RUR9 1427 aa18.63■□□□□ 0.57
CLK3-214ENST00000564096 NPATQ14207 1427 aa18.62■□□□□ 0.57
CLK3-214ENST00000564096 SPHKAPQ2M3C7 1700 aa18.61■□□□□ 0.57
CLK3-214ENST00000564096 CLTCQ00610 1675 aaKnown RBP18.61■□□□□ 0.57
CLK3-214ENST00000564096 PTPRTO14522 1441 aa18.59■□□□□ 0.57
CLK3-214ENST00000564096 MROH2AA6NES4 1674 aa18.59■□□□□ 0.57
CLK3-214ENST00000564096 TONSLQ96HA7 1378 aa18.58■□□□□ 0.57
CLK3-214ENST00000564096 FER1L4A9Z1Z3 1794 aa18.58■□□□□ 0.56
CLK3-214ENST00000564096 TIMELESSQ9UNS1 1208 aa18.56■□□□□ 0.56
CLK3-214ENST00000564096 PLA2R1Q13018 1463 aa18.55■□□□□ 0.56
CLK3-214ENST00000564096 NEUROD1Q13562 356 aa18.55■□□□□ 0.56
CLK3-214ENST00000564096 ERVK-7P63135 1459 aa18.54■□□□□ 0.56
CLK3-214ENST00000564096 SIN3AQ96ST3 1273 aa18.54■□□□□ 0.56
CLK3-214ENST00000564096 NOS1P29475 1434 aa18.54■□□□□ 0.56
CLK3-214ENST00000564096 PREX1Q8TCU6 1659 aa18.53■□□□□ 0.56
CLK3-214ENST00000564096 SPATA31D1Q6ZQQ2 1576 aa18.52■□□□□ 0.56
CLK3-214ENST00000564096 CLTCL1P53675 1640 aa18.51■□□□□ 0.55
CLK3-214ENST00000564096 MADDQ8WXG6 1647 aa18.51■□□□□ 0.55
CLK3-214ENST00000564096 ZMYM3Q14202 1370 aa18.51■□□□□ 0.55
CLK3-214ENST00000564096 ADAMTSL3P82987 1691 aa18.5■□□□□ 0.55
CLK3-214ENST00000564096 SYNMO15061 1565 aa18.49■□□□□ 0.55
CLK3-214ENST00000564096 NEURL4Q96JN8 1562 aa18.49■□□□□ 0.55
CLK3-214ENST00000564096 PIK3C2BO00750 1634 aa18.47■□□□□ 0.55
CLK3-214ENST00000564096 RIMS1Q86UR5 1692 aaKnown RBP18.47■□□□□ 0.55
CLK3-214ENST00000564096 SLC52A1Q9NWF4 448 aa18.46■□□□□ 0.55
CLK3-214ENST00000564096 UGGT1Q9NYU2 1555 aa18.46■□□□□ 0.55
CLK3-214ENST00000564096 C3P01024 1663 aa18.44■□□□□ 0.54
CLK3-214ENST00000564096 ADGRB3O60242 1522 aa18.44■□□□□ 0.54
CLK3-214ENST00000564096 ILDR1Q86SU0 546 aaPredicted RBP18.44■□□□□ 0.54
CLK3-214ENST00000564096 TNRQ92752 1358 aa18.43■□□□□ 0.54
CLK3-214ENST00000564096 SPATA31E1Q6ZUB1 1445 aa18.43■□□□□ 0.54
CLK3-214ENST00000564096 KIF1BO60333 1816 aa18.42■□□□□ 0.54
CLK3-214ENST00000564096 NLRP1Q9C000 1473 aa18.4■□□□□ 0.54
CLK3-214ENST00000564096 FBXO31Q5XUX0 539 aaPredicted RBP18.4■□□□□ 0.54
CLK3-214ENST00000564096 L3MBTL2Q969R5 705 aa18.38■□□□□ 0.53
CLK3-214ENST00000564096 CHGAP10645 457 aaKnown RBP18.36■□□□□ 0.53
CLK3-214ENST00000564096 PTPRMP28827 1452 aa18.35■□□□□ 0.53
CLK3-214ENST00000564096 STAC3Q96MF2 364 aa18.35■□□□□ 0.53
CLK3-214ENST00000564096 STAG3Q9UJ98 1225 aa18.35■□□□□ 0.53
CLK3-214ENST00000564096 CFAP65Q6ZU64 1925 aaKnown RBP18.35■□□□□ 0.53
CLK3-214ENST00000564096 KDM5AP29375 1690 aaKnown RBP18.34■□□□□ 0.53
CLK3-214ENST00000564096 MYO3AQ8NEV4 1616 aa18.34■□□□□ 0.53
CLK3-214ENST00000564096 MYOM2P54296 1465 aa18.34■□□□□ 0.53
CLK3-214ENST00000564096 IDI1Q13907 227 aa18.34■□□□□ 0.53
CLK3-214ENST00000564096 RGL3Q3MIN7 710 aa18.34■□□□□ 0.53
CLK3-214ENST00000564096 TMEM131LA2VDJ0 1609 aa18.34■□□□□ 0.53
CLK3-214ENST00000564096 RPGRIP1LQ68CZ1 1315 aa18.33■□□□□ 0.53
CLK3-214ENST00000564096 PPP1R15AO75807 674 aaPredicted RBP18.33■□□□□ 0.52
CLK3-214ENST00000564096 ZNF326Q5BKZ1 582 aaKnown RBP18.33■□□□□ 0.52
CLK3-214ENST00000564096 UHRF1BP1Q6BDS2 1440 aa18.32■□□□□ 0.52
CLK3-214ENST00000564096 KDM4FA0A1W2PPD8 638 aa18.32■□□□□ 0.52
CLK3-214ENST00000564096 CEBPAP49715 358 aaPredicted RBP18.32■□□□□ 0.52
CLK3-214ENST00000564096 PLPPR3Q6T4P5 718 aa18.32■□□□□ 0.52
CLK3-214ENST00000564096 DCAF11Q8TEB1 546 aa18.32■□□□□ 0.52
CLK3-214ENST00000564096 A2ML1A8K2U0 1454 aa18.3■□□□□ 0.52
CLK3-214ENST00000564096 PRAG1Q86YV5 1406 aa18.29■□□□□ 0.52
CLK3-214ENST00000564096 CEP170BQ9Y4F5 1589 aaPredicted RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms