RNA–Protein interactions for RNA: ENST00000562956.1

LINC00838-201, long intergenic non-protein coding RNA 838, humanhuman

TSL 1 (best) BASIC

Gene LINC00838, Length 2,936 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00838-201ENST00000562956 PLA2R1Q13018 1463 aa13.32□□□□□ -0.28
LINC00838-201ENST00000562956 CFAP74Q9C0B2 1584 aa13.3□□□□□ -0.28
LINC00838-201ENST00000562956 POGZQ7Z3K3 1410 aa13.3□□□□□ -0.28
LINC00838-201ENST00000562956 EIF4G2P78344 907 aaKnown RBP eCLIP13.3□□□□□ -0.28
LINC00838-201ENST00000562956 DHX29Q7Z478 1369 aaKnown RBP13.3□□□□□ -0.28
LINC00838-201ENST00000562956 CCDC144AA2RUR9 1427 aa13.29□□□□□ -0.28
LINC00838-201ENST00000562956 ZNF326Q5BKZ1 582 aaKnown RBP13.29□□□□□ -0.28
LINC00838-201ENST00000562956 KIF3BO15066 747 aa13.28□□□□□ -0.28
LINC00838-201ENST00000562956 KIDINS220Q9ULH0 1771 aa13.28□□□□□ -0.28
LINC00838-201ENST00000562956 NEO1Q92859 1461 aa13.27□□□□□ -0.28
LINC00838-201ENST00000562956 KDM5CP41229 1560 aa13.27□□□□□ -0.28
LINC00838-201ENST00000562956 DEPDC5O75140 1603 aa13.26□□□□□ -0.29
LINC00838-201ENST00000562956 RAPGEF3O95398 923 aa13.26□□□□□ -0.29
LINC00838-201ENST00000562956 UHRF1BP1Q6BDS2 1440 aa13.26□□□□□ -0.29
LINC00838-201ENST00000562956 DCAF11Q8TEB1 546 aa13.26□□□□□ -0.29
LINC00838-201ENST00000562956 KDM2AQ9Y2K7 1162 aa13.26□□□□□ -0.29
LINC00838-201ENST00000562956 ATP10AO60312 1499 aa13.26□□□□□ -0.29
LINC00838-201ENST00000562956 MAP3K4Q9Y6R4 1608 aa13.25□□□□□ -0.29
LINC00838-201ENST00000562956 YTHDC1Q96MU7 727 aaKnown RBP13.25□□□□□ -0.29
LINC00838-201ENST00000562956 MLH3Q9UHC1 1453 aa13.25□□□□□ -0.29
LINC00838-201ENST00000562956 SPATA31E1Q6ZUB1 1445 aa13.24□□□□□ -0.29
LINC00838-201ENST00000562956 GLI2P10070 1586 aa13.24□□□□□ -0.29
LINC00838-201ENST00000562956 FAM69CQ0P6D2 419 aa13.24□□□□□ -0.29
LINC00838-201ENST00000562956 WASHC2AQ641Q2 1341 aa13.24□□□□□ -0.29
LINC00838-201ENST00000562956 A2MP01023 1474 aa13.24□□□□□ -0.29
LINC00838-201ENST00000562956 RGL3Q3MIN7 710 aa13.23□□□□□ -0.29
LINC00838-201ENST00000562956 KANK1Q14678 1352 aa13.23□□□□□ -0.29
LINC00838-201ENST00000562956 VWDEQ8N2E2 1590 aa13.23□□□□□ -0.29
LINC00838-201ENST00000562956 EIF2AK4Q9P2K8 1649 aaKnown RBP13.23□□□□□ -0.29
LINC00838-201ENST00000562956 MROH1Q8NDA8 1641 aa13.23□□□□□ -0.29
LINC00838-201ENST00000562956 HECW2Q9P2P5 1572 aa13.22□□□□□ -0.29
LINC00838-201ENST00000562956 PRDM15P57071 1507 aaPredicted RBP13.22□□□□□ -0.29
LINC00838-201ENST00000562956 E9PCH4 1651 aa13.22□□□□□ -0.29
LINC00838-201ENST00000562956 C11orf95C9JLR9 678 aaPredicted RBP13.22□□□□□ -0.29
LINC00838-201ENST00000562956 FRMPD1Q5SYB0 1578 aa13.21□□□□□ -0.29
LINC00838-201ENST00000562956 DIP2BQ9P265 1576 aa13.21□□□□□ -0.3
LINC00838-201ENST00000562956 RALGAPBQ86X10 1494 aa13.21□□□□□ -0.3
LINC00838-201ENST00000562956 PTPRTO14522 1441 aa13.19□□□□□ -0.3
LINC00838-201ENST00000562956 USP47Q96K76 1375 aa13.19□□□□□ -0.3
LINC00838-201ENST00000562956 TET3O43151 1660 aa13.19□□□□□ -0.3
LINC00838-201ENST00000562956 ABCA6Q8N139 1617 aa13.19□□□□□ -0.3
LINC00838-201ENST00000562956 CENPBP07199 599 aaPredicted RBP13.19□□□□□ -0.3
LINC00838-201ENST00000562956 PRAG1Q86YV5 1406 aa13.18□□□□□ -0.3
LINC00838-201ENST00000562956 TRPM2O94759 1503 aa13.18□□□□□ -0.3
LINC00838-201ENST00000562956 CARD11Q9BXL7 1154 aa13.17□□□□□ -0.3
LINC00838-201ENST00000562956 CCDC7Q96M83 1385 aa13.17□□□□□ -0.3
LINC00838-201ENST00000562956 RICTORQ6R327 1708 aa13.16□□□□□ -0.3
LINC00838-201ENST00000562956 RNF17Q9BXT8 1623 aaKnown RBP13.16□□□□□ -0.3
LINC00838-201ENST00000562956 GGT6Q6P531 493 aa13.16□□□□□ -0.3
LINC00838-201ENST00000562956 KIF7Q2M1P5 1343 aa13.15□□□□□ -0.3
LINC00838-201ENST00000562956 ROCK2O75116 1388 aaKnown RBP13.15□□□□□ -0.3
LINC00838-201ENST00000562956 DIP2CQ9Y2E4 1556 aa13.15□□□□□ -0.3
LINC00838-201ENST00000562956 YEATS2Q9ULM3 1422 aa13.15□□□□□ -0.3
LINC00838-201ENST00000562956 ANP32CO43423 234 aa13.15□□□□□ -0.3
LINC00838-201ENST00000562956 EFCAB6Q5THR3 1501 aa13.15□□□□□ -0.31
LINC00838-201ENST00000562956 LMTK2Q8IWU2 1503 aa13.15□□□□□ -0.31
LINC00838-201ENST00000562956 SPHKAPQ2M3C7 1700 aa13.15□□□□□ -0.31
LINC00838-201ENST00000562956 CLTCL1P53675 1640 aa13.14□□□□□ -0.31
LINC00838-201ENST00000562956 PPRC1Q5VV67 1664 aaKnown RBP13.13□□□□□ -0.31
LINC00838-201ENST00000562956 NBPF1Q3BBV0 1214 aa13.13□□□□□ -0.31
LINC00838-201ENST00000562956 BCORL1Q5H9F3 1711 aa13.12□□□□□ -0.31
LINC00838-201ENST00000562956 TRPM1Q7Z4N2 1603 aa13.12□□□□□ -0.31
LINC00838-201ENST00000562956 UGGT1Q9NYU2 1555 aa13.11□□□□□ -0.31
LINC00838-201ENST00000562956 CEP152O94986 1710 aa13.11□□□□□ -0.31
LINC00838-201ENST00000562956 CNTLNQ9NXG0 1405 aa13.11□□□□□ -0.31
LINC00838-201ENST00000562956 WASHC2CQ9Y4E1 1318 aa13.11□□□□□ -0.31
LINC00838-201ENST00000562956 ST20-MTHFSA0A0A6YYL1 179 aa13.11□□□□□ -0.31
LINC00838-201ENST00000562956 TSPOAP1O95153 1857 aa13.1□□□□□ -0.31
LINC00838-201ENST00000562956 NPATQ14207 1427 aa13.1□□□□□ -0.31
LINC00838-201ENST00000562956 GPRASP1Q5JY77 1395 aa13.1□□□□□ -0.31
LINC00838-201ENST00000562956 ABCC3O15438 1527 aa13.09□□□□□ -0.31
LINC00838-201ENST00000562956 ZMYM4Q5VZL5 1548 aa13.09□□□□□ -0.31
LINC00838-201ENST00000562956 CCER2I3L3R5 266 aa13.08□□□□□ -0.32
LINC00838-201ENST00000562956 POLR1AO95602 1720 aaPredicted RBP13.06□□□□□ -0.32
LINC00838-201ENST00000562956 POLR3GLQ9BT43 218 aa13.06□□□□□ -0.32
LINC00838-201ENST00000562956 MADDQ8WXG6 1647 aa13.05□□□□□ -0.32
LINC00838-201ENST00000562956 ARID4BQ4LE39 1312 aaPredicted RBP13.05□□□□□ -0.32
LINC00838-201ENST00000562956 NEURL4Q96JN8 1562 aa13.05□□□□□ -0.32
LINC00838-201ENST00000562956 STAC3Q96MF2 364 aa13.05□□□□□ -0.32
LINC00838-201ENST00000562956 KIF13AQ9H1H9 1805 aa13.05□□□□□ -0.32
LINC00838-201ENST00000562956 COL17A1Q9UMD9 1497 aaPredicted RBP13.04□□□□□ -0.32
LINC00838-201ENST00000562956 LAMC1P11047 1609 aa13.04□□□□□ -0.32
LINC00838-201ENST00000562956 CAMSAP1Q5T5Y3 1602 aa13.03□□□□□ -0.32
LINC00838-201ENST00000562956 NOS1P29475 1434 aa13.02□□□□□ -0.33
LINC00838-201ENST00000562956 CHGAP10645 457 aaKnown RBP13.02□□□□□ -0.33
LINC00838-201ENST00000562956 ADGRF5Q8IZF2 1346 aa13.01□□□□□ -0.33
LINC00838-201ENST00000562956 ADGRB3O60242 1522 aa13.01□□□□□ -0.33
LINC00838-201ENST00000562956 MROH2AA6NES4 1674 aa13.01□□□□□ -0.33
LINC00838-201ENST00000562956 TESK2Q96S53 571 aa13.01□□□□□ -0.33
LINC00838-201ENST00000562956 PRKRIP1Q9H875 184 aaPredicted RBP13.01□□□□□ -0.33
LINC00838-201ENST00000562956 ARHGAP31Q2M1Z3 1444 aa13.01□□□□□ -0.33
LINC00838-201ENST00000562956 SIGLEC1Q9BZZ2 1709 aa13□□□□□ -0.33
LINC00838-201ENST00000562956 MYOM2P54296 1465 aa13□□□□□ -0.33
LINC00838-201ENST00000562956 KIF1BO60333 1816 aa13□□□□□ -0.33
LINC00838-201ENST00000562956 ZC3H13Q5T200 1668 aaKnown RBP12.99□□□□□ -0.33
LINC00838-201ENST00000562956 SYNMO15061 1565 aa12.99□□□□□ -0.33
LINC00838-201ENST00000562956 REREQ9P2R6 1566 aa12.98□□□□□ -0.33
LINC00838-201ENST00000562956 CFAP65Q6ZU64 1925 aaKnown RBP12.98□□□□□ -0.33
LINC00838-201ENST00000562956 CFAP70Q5T0N1 1121 aa12.98□□□□□ -0.33
LINC00838-201ENST00000562956 DISP3Q9P2K9 1392 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms