RNA–Protein interactions for RNA: ENST00000562680.5

TCF4-216, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 5,733 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-216ENST00000562680 PKNOX2Q96KN3 472 aa9.99□□□□□ -0.81
TCF4-216ENST00000562680 POGZQ7Z3K3 1410 aa9.98□□□□□ -0.81
TCF4-216ENST00000562680 NCOA1Q15788 1441 aa9.98□□□□□ -0.81
TCF4-216ENST00000562680 WDR7Q9Y4E6 1490 aa9.98□□□□□ -0.81
TCF4-216ENST00000562680 TCOF1Q13428 1488 aaKnown RBP9.97□□□□□ -0.81
TCF4-216ENST00000562680 FANCAO15360 1455 aa9.97□□□□□ -0.81
TCF4-216ENST00000562680 USP47Q96K76 1375 aa9.97□□□□□ -0.81
TCF4-216ENST00000562680 SLC52A1Q9NWF4 448 aa9.97□□□□□ -0.81
TCF4-216ENST00000562680 CEP170Q5SW79 1584 aa9.96□□□□□ -0.81
TCF4-216ENST00000562680 DENND4BO75064 1496 aaPredicted RBP9.96□□□□□ -0.81
TCF4-216ENST00000562680 TERF2IPQ9NYB0 399 aa9.96□□□□□ -0.82
TCF4-216ENST00000562680 TEX14Q8IWB6 1497 aa9.96□□□□□ -0.82
TCF4-216ENST00000562680 ASXL2Q76L83 1435 aa9.96□□□□□ -0.82
TCF4-216ENST00000562680 PPP6R1Q9UPN7 881 aa9.96□□□□□ -0.82
TCF4-216ENST00000562680 STK26Q9P289 416 aa9.94□□□□□ -0.82
TCF4-216ENST00000562680 RPGRIP1LQ68CZ1 1315 aa9.94□□□□□ -0.82
TCF4-216ENST00000562680 SHANK2Q9UPX8 1470 aa9.94□□□□□ -0.82
TCF4-216ENST00000562680 MORC1Q86VD1 984 aa9.93□□□□□ -0.82
TCF4-216ENST00000562680 MAPK8IP3Q9UPT6 1336 aa9.93□□□□□ -0.82
TCF4-216ENST00000562680 SENP3Q9H4L4 574 aaPredicted RBP9.93□□□□□ -0.82
TCF4-216ENST00000562680 ST20-MTHFSA0A0A6YYL1 179 aa9.92□□□□□ -0.82
TCF4-216ENST00000562680 ANKRD30BQ9BXX2 1392 aa9.92□□□□□ -0.82
TCF4-216ENST00000562680 EVC2Q86UK5 1308 aa9.92□□□□□ -0.82
TCF4-216ENST00000562680 UHRF1BP1LA0JNW5 1464 aa9.91□□□□□ -0.82
TCF4-216ENST00000562680 CC2D1BQ5T0F9 858 aaKnown RBP9.91□□□□□ -0.82
TCF4-216ENST00000562680 ERICH6BQ5W0A0 696 aa9.91□□□□□ -0.82
TCF4-216ENST00000562680 DHX29Q7Z478 1369 aaKnown RBP9.91□□□□□ -0.82
TCF4-216ENST00000562680 RAPGEF3O95398 923 aa9.91□□□□□ -0.82
TCF4-216ENST00000562680 NLRP13Q86W25 1043 aa9.9□□□□□ -0.82
TCF4-216ENST00000562680 DUOX2Q9NRD8 1548 aa9.9□□□□□ -0.83
TCF4-216ENST00000562680 ERBINQ96RT1 1412 aa9.9□□□□□ -0.83
TCF4-216ENST00000562680 ZNF518AQ6AHZ1 1483 aa9.9□□□□□ -0.83
TCF4-216ENST00000562680 SALL2Q9Y467 1007 aaPredicted RBP9.89□□□□□ -0.83
TCF4-216ENST00000562680 FKBP8Q14318 412 aa9.89□□□□□ -0.83
TCF4-216ENST00000562680 ABCC10Q5T3U5 1492 aa9.89□□□□□ -0.83
TCF4-216ENST00000562680 SAFB2Q14151 953 aaKnown RBP eCLIP9.89□□□□□ -0.83
TCF4-216ENST00000562680 RTEL1-TNFRSF6BF6WH68 1400 aa9.89□□□□□ -0.83
TCF4-216ENST00000562680 TRAK1Q9UPV9 953 aa9.89□□□□□ -0.83
TCF4-216ENST00000562680 CENPJQ9HC77 1338 aaPredicted RBP9.89□□□□□ -0.83
TCF4-216ENST00000562680 HAP1P54257 671 aaPredicted RBP9.88□□□□□ -0.83
TCF4-216ENST00000562680 ABCA8O94911 1581 aa9.87□□□□□ -0.83
TCF4-216ENST00000562680 PPM1GO15355 546 aaPredicted RBP9.86□□□□□ -0.83
TCF4-216ENST00000562680 CCDC7Q96M83 1385 aa9.86□□□□□ -0.83
TCF4-216ENST00000562680 UBE2Q2Q8WVN8 375 aa9.86□□□□□ -0.83
TCF4-216ENST00000562680 SYCP2Q9BX26 1530 aa9.85□□□□□ -0.83
TCF4-216ENST00000562680 MS4A1P11836 297 aa9.85□□□□□ -0.83
TCF4-216ENST00000562680 MYBBP1AQ9BQG0 1328 aaKnown RBP9.85□□□□□ -0.83
TCF4-216ENST00000562680 THEMISQ8N1K5 641 aaPredicted RBP9.84□□□□□ -0.83
TCF4-216ENST00000562680 DNMT1P26358 1616 aaKnown RBP9.84□□□□□ -0.83
TCF4-216ENST00000562680 ADGRL2O95490 1459 aa9.84□□□□□ -0.83
TCF4-216ENST00000562680 CGNL1Q0VF96 1302 aa9.84□□□□□ -0.83
TCF4-216ENST00000562680 CCDC136Q96JN2 1154 aa9.84□□□□□ -0.83
TCF4-216ENST00000562680 CHMP4BQ9H444 224 aaKnown RBP9.84□□□□□ -0.83
TCF4-216ENST00000562680 RPRD2Q5VT52 1461 aaKnown RBP9.84□□□□□ -0.83
TCF4-216ENST00000562680 CALD1Q05682 793 aaKnown RBP9.84□□□□□ -0.83
TCF4-216ENST00000562680 U2SURPO15042 1029 aaKnown RBP9.83□□□□□ -0.84
TCF4-216ENST00000562680 WASHC2AQ641Q2 1341 aa9.83□□□□□ -0.84
TCF4-216ENST00000562680 A2MP01023 1474 aa9.83□□□□□ -0.84
TCF4-216ENST00000562680 NUTM2DQ5VT03 806 aaPredicted RBP9.83□□□□□ -0.84
TCF4-216ENST00000562680 KDM5BQ9UGL1 1544 aa9.83□□□□□ -0.84
TCF4-216ENST00000562680 CHD1O14646 1710 aa9.83□□□□□ -0.84
TCF4-216ENST00000562680 NGEFQ8N5V2 710 aa9.83□□□□□ -0.84
TCF4-216ENST00000562680 LMOD2Q6P5Q4 547 aa9.82□□□□□ -0.84
TCF4-216ENST00000562680 ZBTB7CA1YPR0 619 aa9.82□□□□□ -0.84
TCF4-216ENST00000562680 PTPRKQ15262 1439 aa9.82□□□□□ -0.84
TCF4-216ENST00000562680 CNTLNQ9NXG0 1405 aa9.82□□□□□ -0.84
TCF4-216ENST00000562680 TNNT2P45379 298 aaPredicted RBP9.82□□□□□ -0.84
TCF4-216ENST00000562680 PANK3Q9H999 370 aa9.82□□□□□ -0.84
TCF4-216ENST00000562680 NEO1Q92859 1461 aa9.82□□□□□ -0.84
TCF4-216ENST00000562680 NGDNQ8NEJ9 315 aaKnown RBP9.81□□□□□ -0.84
TCF4-216ENST00000562680 PRKRIP1Q9H875 184 aaPredicted RBP9.81□□□□□ -0.84
TCF4-216ENST00000562680 PDE3BQ13370 1112 aa9.81□□□□□ -0.84
TCF4-216ENST00000562680 CHMP4AQ9BY43 222 aa9.81□□□□□ -0.84
TCF4-216ENST00000562680 KIF7Q2M1P5 1343 aa9.81□□□□□ -0.84
TCF4-216ENST00000562680 MYH16Q9H6N6 1097 aa9.81□□□□□ -0.84
TCF4-216ENST00000562680 NPM2Q86SE8 214 aaKnown RBP9.8□□□□□ -0.84
TCF4-216ENST00000562680 TRAPPC8Q9Y2L5 1435 aa9.8□□□□□ -0.84
TCF4-216ENST00000562680 ARHGEF5Q12774 1597 aa9.79□□□□□ -0.84
TCF4-216ENST00000562680 CFAP74Q9C0B2 1584 aa9.79□□□□□ -0.84
TCF4-216ENST00000562680 CFAP70Q5T0N1 1121 aa9.79□□□□□ -0.84
TCF4-216ENST00000562680 FAM135AQ9P2D6 1515 aa9.79□□□□□ -0.84
TCF4-216ENST00000562680 TXNDC2Q86VQ3 553 aa9.78□□□□□ -0.84
TCF4-216ENST00000562680 MAPKBP1O60336 1514 aa9.78□□□□□ -0.84
TCF4-216ENST00000562680 MINK1Q8N4C8 1332 aaPredicted RBP9.78□□□□□ -0.84
TCF4-216ENST00000562680 NBPF8Q3BBV2 869 aa9.78□□□□□ -0.84
TCF4-216ENST00000562680 U2AF1L5P0DN76 240 aaPredicted RBP9.77□□□□□ -0.85
TCF4-216ENST00000562680 U2AF1Q01081 240 aaKnown RBP eCLIP9.77□□□□□ -0.85
TCF4-216ENST00000562680 LMOD3Q0VAK6 560 aa9.77□□□□□ -0.85
TCF4-216ENST00000562680 ANO8Q9HCE9 1232 aaPredicted RBP9.77□□□□□ -0.85
TCF4-216ENST00000562680 UPF2Q9HAU5 1272 aaKnown RBP9.77□□□□□ -0.85
TCF4-216ENST00000562680 COG3Q96JB2 828 aa9.76□□□□□ -0.85
TCF4-216ENST00000562680 NEUROD2Q15784 382 aa9.76□□□□□ -0.85
TCF4-216ENST00000562680 ANP32AP39687 249 aaKnown RBP9.75□□□□□ -0.85
TCF4-216ENST00000562680 PDE4CQ08493 712 aa9.75□□□□□ -0.85
TCF4-216ENST00000562680 MAGI3Q5TCQ9 1506 aa9.75□□□□□ -0.85
TCF4-216ENST00000562680 PAK3O75914 559 aaPredicted RBP9.75□□□□□ -0.85
TCF4-216ENST00000562680 RTF1Q92541 710 aaKnown RBP9.75□□□□□ -0.85
TCF4-216ENST00000562680 MYO5CQ9NQX4 1742 aa9.75□□□□□ -0.85
TCF4-216ENST00000562680 ATAD2Q6PL18 1390 aa9.75□□□□□ -0.85
TCF4-216ENST00000562680 ATP7AQ04656 1500 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms