RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 PZPP20742 1482 aa14.96□□□□□ -0.01
USP3-219ENST00000561326 TIMELESSQ9UNS1 1208 aa14.96□□□□□ -0.01
USP3-219ENST00000561326 FRMPD1Q5SYB0 1578 aa14.95□□□□□ -0.02
USP3-219ENST00000561326 PKD2Q13563 968 aa14.95□□□□□ -0.02
USP3-219ENST00000561326 ABCA6Q8N139 1617 aa14.95□□□□□ -0.02
USP3-219ENST00000561326 NEUROD1Q13562 356 aa14.94□□□□□ -0.02
USP3-219ENST00000561326 IQGAP3Q86VI3 1631 aa14.94□□□□□ -0.02
USP3-219ENST00000561326 FAM135AQ9P2D6 1515 aa14.93□□□□□ -0.02
USP3-219ENST00000561326 DEPDC5O75140 1603 aa14.93□□□□□ -0.02
USP3-219ENST00000561326 DIP2CQ9Y2E4 1556 aa14.93□□□□□ -0.02
USP3-219ENST00000561326 BCORL1Q5H9F3 1711 aa14.92□□□□□ -0.02
USP3-219ENST00000561326 SIN3AQ96ST3 1273 aa14.92□□□□□ -0.02
USP3-219ENST00000561326 ATP10AO60312 1499 aa14.92□□□□□ -0.02
USP3-219ENST00000561326 ANKRD30BQ9BXX2 1392 aa14.9□□□□□ -0.02
USP3-219ENST00000561326 FOXD1Q16676 465 aa14.9□□□□□ -0.02
USP3-219ENST00000561326 RNF17Q9BXT8 1623 aaKnown RBP14.89□□□□□ -0.03
USP3-219ENST00000561326 YEATS2Q9ULM3 1422 aa14.89□□□□□ -0.03
USP3-219ENST00000561326 COL17A1Q9UMD9 1497 aaPredicted RBP14.89□□□□□ -0.03
USP3-219ENST00000561326 GGT6Q6P531 493 aa14.87□□□□□ -0.03
USP3-219ENST00000561326 TET3O43151 1660 aa14.87□□□□□ -0.03
USP3-219ENST00000561326 TONSLQ96HA7 1378 aa14.86□□□□□ -0.03
USP3-219ENST00000561326 REREQ9P2R6 1566 aa14.86□□□□□ -0.03
USP3-219ENST00000561326 PRDM15P57071 1507 aaPredicted RBP14.86□□□□□ -0.03
USP3-219ENST00000561326 CFAP65Q6ZU64 1925 aaKnown RBP14.85□□□□□ -0.03
USP3-219ENST00000561326 VWDEQ8N2E2 1590 aa14.85□□□□□ -0.03
USP3-219ENST00000561326 PPP6R1Q9UPN7 881 aa14.84□□□□□ -0.03
USP3-219ENST00000561326 WASHC2CQ9Y4E1 1318 aa14.84□□□□□ -0.03
USP3-219ENST00000561326 AGLP35573 1532 aa14.83□□□□□ -0.04
USP3-219ENST00000561326 ARHGEF40Q8TER5 1519 aa14.83□□□□□ -0.04
USP3-219ENST00000561326 MROH1Q8NDA8 1641 aa14.83□□□□□ -0.04
USP3-219ENST00000561326 CEP152O94986 1710 aa14.83□□□□□ -0.04
USP3-219ENST00000561326 E9PCH4 1651 aa14.82□□□□□ -0.04
USP3-219ENST00000561326 RPRD2Q5VT52 1461 aaKnown RBP14.82□□□□□ -0.04
USP3-219ENST00000561326 LMTK2Q8IWU2 1503 aa14.81□□□□□ -0.04
USP3-219ENST00000561326 ZC3H13Q5T200 1668 aaKnown RBP14.8□□□□□ -0.04
USP3-219ENST00000561326 PPP1R15AO75807 674 aaPredicted RBP14.79□□□□□ -0.04
USP3-219ENST00000561326 SPHKAPQ2M3C7 1700 aa14.79□□□□□ -0.04
USP3-219ENST00000561326 CCDC144AA2RUR9 1427 aa14.78□□□□□ -0.04
USP3-219ENST00000561326 ARID4BQ4LE39 1312 aaPredicted RBP14.77□□□□□ -0.04
USP3-219ENST00000561326 ESF1Q9H501 851 aaKnown RBP14.77□□□□□ -0.05
USP3-219ENST00000561326 EFCAB6Q5THR3 1501 aa14.76□□□□□ -0.05
USP3-219ENST00000561326 ABCC3O15438 1527 aa14.76□□□□□ -0.05
USP3-219ENST00000561326 CAMSAP1Q5T5Y3 1602 aa14.75□□□□□ -0.05
USP3-219ENST00000561326 L3MBTL2Q969R5 705 aa14.75□□□□□ -0.05
USP3-219ENST00000561326 PTPRTO14522 1441 aa14.75□□□□□ -0.05
USP3-219ENST00000561326 KIF1BO60333 1816 aa14.73□□□□□ -0.05
USP3-219ENST00000561326 PLA2R1Q13018 1463 aa14.73□□□□□ -0.05
USP3-219ENST00000561326 TRPM2O94759 1503 aa14.72□□□□□ -0.05
USP3-219ENST00000561326 MLECQ14165 292 aa14.72□□□□□ -0.05
USP3-219ENST00000561326 ARHGAP31Q2M1Z3 1444 aa14.72□□□□□ -0.05
USP3-219ENST00000561326 SIGLEC1Q9BZZ2 1709 aa14.71□□□□□ -0.05
USP3-219ENST00000561326 CLTCQ00610 1675 aaKnown RBP14.71□□□□□ -0.06
USP3-219ENST00000561326 NPATQ14207 1427 aa14.69□□□□□ -0.06
USP3-219ENST00000561326 STAC3Q96MF2 364 aa14.69□□□□□ -0.06
USP3-219ENST00000561326 CNTLNQ9NXG0 1405 aa14.68□□□□□ -0.06
USP3-219ENST00000561326 RGL3Q3MIN7 710 aa14.67□□□□□ -0.06
USP3-219ENST00000561326 DCAF11Q8TEB1 546 aa14.67□□□□□ -0.06
USP3-219ENST00000561326 CLTCL1P53675 1640 aa14.66□□□□□ -0.06
USP3-219ENST00000561326 SLC52A1Q9NWF4 448 aa14.66□□□□□ -0.06
USP3-219ENST00000561326 PREX1Q8TCU6 1659 aa14.65□□□□□ -0.06
USP3-219ENST00000561326 ZNF316A6NFI3 1004 aaPredicted RBP14.65□□□□□ -0.06
USP3-219ENST00000561326 KDM2AQ9Y2K7 1162 aa14.65□□□□□ -0.06
USP3-219ENST00000561326 NEURL4Q96JN8 1562 aa14.64□□□□□ -0.07
USP3-219ENST00000561326 NOS1P29475 1434 aa14.64□□□□□ -0.07
USP3-219ENST00000561326 MROH2AA6NES4 1674 aa14.64□□□□□ -0.07
USP3-219ENST00000561326 ZMYM3Q14202 1370 aa14.62□□□□□ -0.07
USP3-219ENST00000561326 SPATA31E1Q6ZUB1 1445 aa14.62□□□□□ -0.07
USP3-219ENST00000561326 FER1L4A9Z1Z3 1794 aa14.61□□□□□ -0.07
USP3-219ENST00000561326 CHGAP10645 457 aaKnown RBP14.61□□□□□ -0.07
USP3-219ENST00000561326 ZNF326Q5BKZ1 582 aaKnown RBP14.61□□□□□ -0.07
USP3-219ENST00000561326 UHRF1BP1Q6BDS2 1440 aa14.6□□□□□ -0.07
USP3-219ENST00000561326 PIK3C2BO00750 1634 aa14.59□□□□□ -0.07
USP3-219ENST00000561326 NBPF8Q3BBV2 869 aa14.59□□□□□ -0.07
USP3-219ENST00000561326 FBXO31Q5XUX0 539 aaPredicted RBP14.59□□□□□ -0.07
USP3-219ENST00000561326 RPGRIP1LQ68CZ1 1315 aa14.59□□□□□ -0.07
USP3-219ENST00000561326 SYNMO15061 1565 aa14.59□□□□□ -0.07
USP3-219ENST00000561326 ERVK-7P63135 1459 aa14.58□□□□□ -0.08
USP3-219ENST00000561326 IDI1Q13907 227 aa14.58□□□□□ -0.08
USP3-219ENST00000561326 UGGT1Q9NYU2 1555 aa14.58□□□□□ -0.08
USP3-219ENST00000561326 STAG3Q9UJ98 1225 aa14.57□□□□□ -0.08
USP3-219ENST00000561326 MYO5BQ9ULV0 1848 aa14.56□□□□□ -0.08
USP3-219ENST00000561326 SPATA31D1Q6ZQQ2 1576 aa14.56□□□□□ -0.08
USP3-219ENST00000561326 EIF4G2P78344 907 aaKnown RBP eCLIP14.55□□□□□ -0.08
USP3-219ENST00000561326 ADGRB3O60242 1522 aa14.54□□□□□ -0.08
USP3-219ENST00000561326 IFT172Q9UG01 1749 aa14.54□□□□□ -0.08
USP3-219ENST00000561326 PPLO60437 1756 aa14.54□□□□□ -0.08
USP3-219ENST00000561326 SETD1BQ9UPS6 1966 aaKnown RBP14.54□□□□□ -0.08
USP3-219ENST00000561326 C3P01024 1663 aa14.53□□□□□ -0.08
USP3-219ENST00000561326 PRAG1Q86YV5 1406 aa14.53□□□□□ -0.08
USP3-219ENST00000561326 VGFO15240 615 aaPredicted RBP14.53□□□□□ -0.08
USP3-219ENST00000561326 RALGAPBQ86X10 1494 aa14.52□□□□□ -0.08
USP3-219ENST00000561326 TNRQ92752 1358 aa14.52□□□□□ -0.08
USP3-219ENST00000561326 TMEM131LA2VDJ0 1609 aa14.52□□□□□ -0.09
USP3-219ENST00000561326 TRPM1Q7Z4N2 1603 aa14.52□□□□□ -0.09
USP3-219ENST00000561326 HDGFP51858 240 aaKnown RBP14.51□□□□□ -0.09
USP3-219ENST00000561326 CARD11Q9BXL7 1154 aa14.51□□□□□ -0.09
USP3-219ENST00000561326 KIAA1210Q9ULL0 1709 aa14.5□□□□□ -0.09
USP3-219ENST00000561326 ADAMTSL3P82987 1691 aa14.5□□□□□ -0.09
USP3-219ENST00000561326 MYOM2P54296 1465 aa14.5□□□□□ -0.09
USP3-219ENST00000561326 ROCK2O75116 1388 aaKnown RBP14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms