RNA–Protein interactions for RNA: ENST00000561268.5

SPG11-224, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 4

Gene SPG11, Length 530 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-224ENST00000561268 DEPDC5O75140 1603 aa11.03□□□□□ -0.64
SPG11-224ENST00000561268 CFDP1Q9UEE9 299 aaPredicted RBP11.03□□□□□ -0.64
SPG11-224ENST00000561268 PTPN23Q9H3S7 1636 aa11.02□□□□□ -0.64
SPG11-224ENST00000561268 MYOM3Q5VTT5 1437 aa11.02□□□□□ -0.64
SPG11-224ENST00000561268 SHANK2Q9UPX8 1470 aa11.02□□□□□ -0.65
SPG11-224ENST00000561268 POLR1AO95602 1720 aaPredicted RBP11.02□□□□□ -0.65
SPG11-224ENST00000561268 KDM5DQ9BY66 1539 aa11.02□□□□□ -0.65
SPG11-224ENST00000561268 CEP170BQ9Y4F5 1589 aaPredicted RBP11.01□□□□□ -0.65
SPG11-224ENST00000561268 SPAG9O60271 1321 aaKnown RBP11.01□□□□□ -0.65
SPG11-224ENST00000561268 CEP152O94986 1710 aa11.01□□□□□ -0.65
SPG11-224ENST00000561268 TCOF1Q13428 1488 aaKnown RBP11□□□□□ -0.65
SPG11-224ENST00000561268 U3KPZ7 1027 aaPredicted RBP11□□□□□ -0.65
SPG11-224ENST00000561268 UHRF1BP1Q6BDS2 1440 aa11□□□□□ -0.65
SPG11-224ENST00000561268 PRDM15P57071 1507 aaPredicted RBP10.99□□□□□ -0.65
SPG11-224ENST00000561268 ZNF644Q9H582 1327 aaPredicted RBP10.99□□□□□ -0.65
SPG11-224ENST00000561268 CAMSAP1Q5T5Y3 1602 aa10.98□□□□□ -0.65
SPG11-224ENST00000561268 LOC105371045A0A1W2PR82 267 aa10.98□□□□□ -0.65
SPG11-224ENST00000561268 HNRNPMP52272 730 aaKnown RBP eCLIP10.98□□□□□ -0.65
SPG11-224ENST00000561268 CAPN15O75808 1086 aa10.97□□□□□ -0.65
SPG11-224ENST00000561268 PTPRKQ15262 1439 aa10.97□□□□□ -0.65
SPG11-224ENST00000561268 PZPP20742 1482 aa10.96□□□□□ -0.65
SPG11-224ENST00000561268 PLA2R1Q13018 1463 aa10.96□□□□□ -0.65
SPG11-224ENST00000561268 DHX29Q7Z478 1369 aaKnown RBP10.96□□□□□ -0.65
SPG11-224ENST00000561268 MLECQ14165 292 aa10.96□□□□□ -0.65
SPG11-224ENST00000561268 SPINK5Q9NQ38 1064 aaPredicted RBP10.96□□□□□ -0.65
SPG11-224ENST00000561268 ZNF777Q9ULD5 760 aaPredicted RBP10.96□□□□□ -0.65
SPG11-224ENST00000561268 SPATA31D1Q6ZQQ2 1576 aa10.95□□□□□ -0.66
SPG11-224ENST00000561268 ABCC3O15438 1527 aa10.95□□□□□ -0.66
SPG11-224ENST00000561268 DUOX2Q9NRD8 1548 aa10.95□□□□□ -0.66
SPG11-224ENST00000561268 NCOA1Q15788 1441 aa10.95□□□□□ -0.66
SPG11-224ENST00000561268 DSG3P32926 999 aa10.95□□□□□ -0.66
SPG11-224ENST00000561268 FGD6Q6ZV73 1430 aa10.94□□□□□ -0.66
SPG11-224ENST00000561268 RSPH4AQ5TD94 716 aa10.94□□□□□ -0.66
SPG11-224ENST00000561268 VWDEQ8N2E2 1590 aa10.94□□□□□ -0.66
SPG11-224ENST00000561268 KDM5AP29375 1690 aaKnown RBP10.93□□□□□ -0.66
SPG11-224ENST00000561268 KANK4Q5T7N3 995 aaPredicted RBP10.93□□□□□ -0.66
SPG11-224ENST00000561268 NEURL4Q96JN8 1562 aa10.93□□□□□ -0.66
SPG11-224ENST00000561268 PTPRTO14522 1441 aa10.92□□□□□ -0.66
SPG11-224ENST00000561268 ZMYM3Q14202 1370 aa10.92□□□□□ -0.66
SPG11-224ENST00000561268 ADGRL2O95490 1459 aa10.92□□□□□ -0.66
SPG11-224ENST00000561268 ERBINQ96RT1 1412 aa10.92□□□□□ -0.66
SPG11-224ENST00000561268 LTBP4Q8N2S1 1624 aa10.91□□□□□ -0.66
SPG11-224ENST00000561268 CEBPAP49715 358 aaPredicted RBP10.91□□□□□ -0.66
SPG11-224ENST00000561268 UBR1Q8IWV7 1749 aa10.91□□□□□ -0.66
SPG11-224ENST00000561268 A2ML1A8K2U0 1454 aa10.91□□□□□ -0.66
SPG11-224ENST00000561268 ABCC5O15440 1437 aa10.91□□□□□ -0.66
SPG11-224ENST00000561268 DAPK1P53355 1430 aa10.91□□□□□ -0.66
SPG11-224ENST00000561268 CFAP65Q6ZU64 1925 aaKnown RBP10.9□□□□□ -0.66
SPG11-224ENST00000561268 HSPA2P54652 639 aa10.9□□□□□ -0.66
SPG11-224ENST00000561268 MYT1LQ9UL68 1186 aa10.89□□□□□ -0.67
SPG11-224ENST00000561268 LMTK2Q8IWU2 1503 aa10.89□□□□□ -0.67
SPG11-224ENST00000561268 GCC2Q8IWJ2 1684 aa10.89□□□□□ -0.67
SPG11-224ENST00000561268 IQSEC2Q5JU85 1478 aa10.88□□□□□ -0.67
SPG11-224ENST00000561268 UNC13BO14795 1591 aa10.88□□□□□ -0.67
SPG11-224ENST00000561268 NLRP1Q9C000 1473 aa10.87□□□□□ -0.67
SPG11-224ENST00000561268 ERVK-7P63135 1459 aa10.87□□□□□ -0.67
SPG11-224ENST00000561268 EFCAB6Q5THR3 1501 aa10.86□□□□□ -0.67
SPG11-224ENST00000561268 ILDR1Q86SU0 546 aaPredicted RBP10.86□□□□□ -0.67
SPG11-224ENST00000561268 TET3O43151 1660 aa10.85□□□□□ -0.67
SPG11-224ENST00000561268 IQGAP1P46940 1657 aa10.85□□□□□ -0.67
SPG11-224ENST00000561268 ARHGAP31Q2M1Z3 1444 aa10.85□□□□□ -0.67
SPG11-224ENST00000561268 KIF15Q9NS87 1388 aa10.84□□□□□ -0.67
SPG11-224ENST00000561268 SYNMO15061 1565 aa10.83□□□□□ -0.68
SPG11-224ENST00000561268 UGGT1Q9NYU2 1555 aa10.83□□□□□ -0.68
SPG11-224ENST00000561268 ESF1Q9H501 851 aaKnown RBP10.83□□□□□ -0.68
SPG11-224ENST00000561268 MYO5BQ9ULV0 1848 aa10.83□□□□□ -0.68
SPG11-224ENST00000561268 PIK3C2BO00750 1634 aa10.83□□□□□ -0.68
SPG11-224ENST00000561268 IQGAP3Q86VI3 1631 aa10.83□□□□□ -0.68
SPG11-224ENST00000561268 STRCP1A6NGW2 1772 aa10.82□□□□□ -0.68
SPG11-224ENST00000561268 MED14O60244 1454 aa10.82□□□□□ -0.68
SPG11-224ENST00000561268 TNRQ92752 1358 aa10.82□□□□□ -0.68
SPG11-224ENST00000561268 FBXO41Q8TF61 875 aa10.82□□□□□ -0.68
SPG11-224ENST00000561268 SLIT1O75093 1534 aa10.81□□□□□ -0.68
SPG11-224ENST00000561268 KIF3BO15066 747 aa10.81□□□□□ -0.68
SPG11-224ENST00000561268 GGT6Q6P531 493 aa10.81□□□□□ -0.68
SPG11-224ENST00000561268 TSPY4P0CV99 314 aa10.8□□□□□ -0.68
SPG11-224ENST00000561268 TSPY10P0CW01 314 aa10.8□□□□□ -0.68
SPG11-224ENST00000561268 ARHGAP23Q9P227 1491 aa10.8□□□□□ -0.68
SPG11-224ENST00000561268 XIRP1Q702N8 1843 aaKnown RBP10.79□□□□□ -0.68
SPG11-224ENST00000561268 E9PCH4 1651 aa10.79□□□□□ -0.68
SPG11-224ENST00000561268 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.78□□□□□ -0.68
SPG11-224ENST00000561268 RPRD2Q5VT52 1461 aaKnown RBP10.78□□□□□ -0.68
SPG11-224ENST00000561268 ANKRD30AQ9BXX3 1397 aa10.77□□□□□ -0.68
SPG11-224ENST00000561268 ADGRB3O60242 1522 aa10.77□□□□□ -0.69
SPG11-224ENST00000561268 CPS1P31327 1500 aa10.77□□□□□ -0.69
SPG11-224ENST00000561268 NOS1P29475 1434 aa10.76□□□□□ -0.69
SPG11-224ENST00000561268 PKD2Q13563 968 aa10.76□□□□□ -0.69
SPG11-224ENST00000561268 ROCK1Q13464 1354 aa10.76□□□□□ -0.69
SPG11-224ENST00000561268 SPHKAPQ2M3C7 1700 aa10.75□□□□□ -0.69
SPG11-224ENST00000561268 APLP2Q06481 763 aa10.75□□□□□ -0.69
SPG11-224ENST00000561268 CERKQ8TCT0 537 aa10.75□□□□□ -0.69
SPG11-224ENST00000561268 WASHC2CQ9Y4E1 1318 aa10.75□□□□□ -0.69
SPG11-224ENST00000561268 ALKQ9UM73 1620 aa10.74□□□□□ -0.69
SPG11-224ENST00000561268 RRBP1Q9P2E9 1410 aaKnown RBP10.74□□□□□ -0.69
SPG11-224ENST00000561268 ANKRD50Q9ULJ7 1429 aa10.74□□□□□ -0.69
SPG11-224ENST00000561268 TMEM131LA2VDJ0 1609 aa10.73□□□□□ -0.69
SPG11-224ENST00000561268 FBXO31Q5XUX0 539 aaPredicted RBP10.73□□□□□ -0.69
SPG11-224ENST00000561268 NWD1Q149M9 1564 aa10.73□□□□□ -0.69
SPG11-224ENST00000561268 SCAF11Q99590 1463 aaKnown RBP10.72□□□□□ -0.69
SPG11-224ENST00000561268 ABCB7O75027 752 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms