RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 AFAP1Q8N556 730 aa17.86■□□□□ 0.45
SHMT2-229ENST00000557348 POGZQ7Z3K3 1410 aa17.85■□□□□ 0.45
SHMT2-229ENST00000557348 KDM5CP41229 1560 aa17.85■□□□□ 0.45
SHMT2-229ENST00000557348 KANK1Q14678 1352 aa17.84■□□□□ 0.45
SHMT2-229ENST00000557348 DHX29Q7Z478 1369 aaKnown RBP17.84■□□□□ 0.45
SHMT2-229ENST00000557348 DEPDC5O75140 1603 aa17.83■□□□□ 0.45
SHMT2-229ENST00000557348 MLH3Q9UHC1 1453 aa17.83■□□□□ 0.45
SHMT2-229ENST00000557348 CCDC144AA2RUR9 1427 aa17.83■□□□□ 0.44
SHMT2-229ENST00000557348 KIF13AQ9H1H9 1805 aa17.83■□□□□ 0.44
SHMT2-229ENST00000557348 EIF4G2P78344 907 aaKnown RBP eCLIP17.81■□□□□ 0.44
SHMT2-229ENST00000557348 MAP3K4Q9Y6R4 1608 aa17.8■□□□□ 0.44
SHMT2-229ENST00000557348 UHRF1BP1Q6BDS2 1440 aa17.8■□□□□ 0.44
SHMT2-229ENST00000557348 HECW2Q9P2P5 1572 aa17.79■□□□□ 0.44
SHMT2-229ENST00000557348 PRDM15P57071 1507 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-229ENST00000557348 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.78■□□□□ 0.44
SHMT2-229ENST00000557348 MYT1LQ9UL68 1186 aa17.78■□□□□ 0.44
SHMT2-229ENST00000557348 VWDEQ8N2E2 1590 aa17.77■□□□□ 0.44
SHMT2-229ENST00000557348 KIDINS220Q9ULH0 1771 aa17.77■□□□□ 0.44
SHMT2-229ENST00000557348 TET3O43151 1660 aa17.76■□□□□ 0.43
SHMT2-229ENST00000557348 MIER1Q8N108 512 aa17.76■□□□□ 0.43
SHMT2-229ENST00000557348 A2MP01023 1474 aa17.75■□□□□ 0.43
SHMT2-229ENST00000557348 DIP2BQ9P265 1576 aa17.73■□□□□ 0.43
SHMT2-229ENST00000557348 RALGAPBQ86X10 1494 aa17.73■□□□□ 0.43
SHMT2-229ENST00000557348 BCORL1Q5H9F3 1711 aa17.73■□□□□ 0.43
SHMT2-229ENST00000557348 STAC3Q96MF2 364 aa17.73■□□□□ 0.43
SHMT2-229ENST00000557348 RNF17Q9BXT8 1623 aaKnown RBP17.73■□□□□ 0.43
SHMT2-229ENST00000557348 PLA2R1Q13018 1463 aa17.72■□□□□ 0.43
SHMT2-229ENST00000557348 LMTK2Q8IWU2 1503 aa17.72■□□□□ 0.43
SHMT2-229ENST00000557348 HSPA5P11021 654 aaKnown RBP17.71■□□□□ 0.43
SHMT2-229ENST00000557348 NBPF8Q3BBV2 869 aa17.71■□□□□ 0.43
SHMT2-229ENST00000557348 TRPM2O94759 1503 aa17.71■□□□□ 0.43
SHMT2-229ENST00000557348 PTPRTO14522 1441 aa17.71■□□□□ 0.43
SHMT2-229ENST00000557348 KIF3BO15066 747 aa17.71■□□□□ 0.42
SHMT2-229ENST00000557348 FAM69CQ0P6D2 419 aa17.69■□□□□ 0.42
SHMT2-229ENST00000557348 NEURL4Q96JN8 1562 aa17.69■□□□□ 0.42
SHMT2-229ENST00000557348 SPATA31E1Q6ZUB1 1445 aa17.68■□□□□ 0.42
SHMT2-229ENST00000557348 MROH1Q8NDA8 1641 aa17.68■□□□□ 0.42
SHMT2-229ENST00000557348 E9PCH4 1651 aa17.68■□□□□ 0.42
SHMT2-229ENST00000557348 DDX10Q13206 875 aaKnown RBP17.67■□□□□ 0.42
SHMT2-229ENST00000557348 ZMYM4Q5VZL5 1548 aa17.66■□□□□ 0.42
SHMT2-229ENST00000557348 SPHKAPQ2M3C7 1700 aa17.66■□□□□ 0.42
SHMT2-229ENST00000557348 RICTORQ6R327 1708 aa17.66■□□□□ 0.42
SHMT2-229ENST00000557348 EFCAB6Q5THR3 1501 aa17.65■□□□□ 0.42
SHMT2-229ENST00000557348 ARID4BQ4LE39 1312 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-229ENST00000557348 TSPOAP1O95153 1857 aa17.65■□□□□ 0.42
SHMT2-229ENST00000557348 DCAF11Q8TEB1 546 aa17.64■□□□□ 0.42
SHMT2-229ENST00000557348 ABCA6Q8N139 1617 aa17.64■□□□□ 0.41
SHMT2-229ENST00000557348 FRMPD1Q5SYB0 1578 aa17.64■□□□□ 0.41
SHMT2-229ENST00000557348 PRAG1Q86YV5 1406 aa17.63■□□□□ 0.41
SHMT2-229ENST00000557348 USP47Q96K76 1375 aa17.62■□□□□ 0.41
SHMT2-229ENST00000557348 DIP2CQ9Y2E4 1556 aa17.62■□□□□ 0.41
SHMT2-229ENST00000557348 HIRIP3Q9BW71 556 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-229ENST00000557348 LAMC1P11047 1609 aa17.61■□□□□ 0.41
SHMT2-229ENST00000557348 ANP32CO43423 234 aa17.61■□□□□ 0.41
SHMT2-229ENST00000557348 ZNF326Q5BKZ1 582 aaKnown RBP17.61■□□□□ 0.41
SHMT2-229ENST00000557348 CEP152O94986 1710 aa17.6■□□□□ 0.41
SHMT2-229ENST00000557348 POLR1AO95602 1720 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-229ENST00000557348 GPRASP1Q5JY77 1395 aa17.59■□□□□ 0.41
SHMT2-229ENST00000557348 CCDC7Q96M83 1385 aa17.59■□□□□ 0.41
SHMT2-229ENST00000557348 RAPGEF3O95398 923 aa17.58■□□□□ 0.41
SHMT2-229ENST00000557348 CARD11Q9BXL7 1154 aa17.58■□□□□ 0.41
SHMT2-229ENST00000557348 ROCK2O75116 1388 aaKnown RBP17.58■□□□□ 0.41
SHMT2-229ENST00000557348 ZC3H13Q5T200 1668 aaKnown RBP17.58■□□□□ 0.4
SHMT2-229ENST00000557348 WASHC2AQ641Q2 1341 aa17.58■□□□□ 0.4
SHMT2-229ENST00000557348 TRPM1Q7Z4N2 1603 aa17.57■□□□□ 0.4
SHMT2-229ENST00000557348 CCER2I3L3R5 266 aa17.57■□□□□ 0.4
SHMT2-229ENST00000557348 REREQ9P2R6 1566 aa17.57■□□□□ 0.4
SHMT2-229ENST00000557348 CNTLNQ9NXG0 1405 aa17.56■□□□□ 0.4
SHMT2-229ENST00000557348 KDM2AQ9Y2K7 1162 aa17.56■□□□□ 0.4
SHMT2-229ENST00000557348 CLTCL1P53675 1640 aa17.56■□□□□ 0.4
SHMT2-229ENST00000557348 PPRC1Q5VV67 1664 aaKnown RBP17.56■□□□□ 0.4
SHMT2-229ENST00000557348 ABCC3O15438 1527 aa17.55■□□□□ 0.4
SHMT2-229ENST00000557348 RGL3Q3MIN7 710 aa17.55■□□□□ 0.4
SHMT2-229ENST00000557348 ARHGAP31Q2M1Z3 1444 aa17.54■□□□□ 0.4
SHMT2-229ENST00000557348 PPP6R1Q9UPN7 881 aa17.52■□□□□ 0.4
SHMT2-229ENST00000557348 WASHC2CQ9Y4E1 1318 aa17.52■□□□□ 0.4
SHMT2-229ENST00000557348 MYOM2P54296 1465 aa17.51■□□□□ 0.39
SHMT2-229ENST00000557348 AGLP35573 1532 aa17.51■□□□□ 0.39
SHMT2-229ENST00000557348 NPATQ14207 1427 aa17.5■□□□□ 0.39
SHMT2-229ENST00000557348 GGT6Q6P531 493 aa17.5■□□□□ 0.39
SHMT2-229ENST00000557348 CAMSAP1Q5T5Y3 1602 aa17.5■□□□□ 0.39
SHMT2-229ENST00000557348 KIF7Q2M1P5 1343 aa17.5■□□□□ 0.39
SHMT2-229ENST00000557348 YEATS2Q9ULM3 1422 aa17.5■□□□□ 0.39
SHMT2-229ENST00000557348 MADDQ8WXG6 1647 aa17.49■□□□□ 0.39
SHMT2-229ENST00000557348 KIF1BO60333 1816 aa17.48■□□□□ 0.39
SHMT2-229ENST00000557348 KIAA1210Q9ULL0 1709 aa17.46■□□□□ 0.39
SHMT2-229ENST00000557348 NOS1P29475 1434 aa17.46■□□□□ 0.39
SHMT2-229ENST00000557348 ADGRB3O60242 1522 aa17.46■□□□□ 0.39
SHMT2-229ENST00000557348 RPGRIP1LQ68CZ1 1315 aa17.45■□□□□ 0.38
SHMT2-229ENST00000557348 YTHDC1Q96MU7 727 aaKnown RBP17.45■□□□□ 0.38
SHMT2-229ENST00000557348 SLC24A1O60721 1099 aa17.45■□□□□ 0.38
SHMT2-229ENST00000557348 C11orf95C9JLR9 678 aaPredicted RBP17.43■□□□□ 0.38
SHMT2-229ENST00000557348 ARHGEF40Q8TER5 1519 aa17.43■□□□□ 0.38
SHMT2-229ENST00000557348 ST20-MTHFSA0A0A6YYL1 179 aa17.42■□□□□ 0.38
SHMT2-229ENST00000557348 EIF3AQ14152 1382 aaKnown RBP17.42■□□□□ 0.38
SHMT2-229ENST00000557348 NRXN1Q9ULB1 1477 aa17.4■□□□□ 0.38
SHMT2-229ENST00000557348 SLC52A1Q9NWF4 448 aa17.4■□□□□ 0.38
SHMT2-229ENST00000557348 PIK3C2BO00750 1634 aa17.4■□□□□ 0.38
SHMT2-229ENST00000557348 SCAF11Q99590 1463 aaKnown RBP17.4■□□□□ 0.38
SHMT2-229ENST00000557348 IFT172Q9UG01 1749 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms