RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 KDM4FA0A1W2PPD8 638 aa19.23■□□□□ 0.67
SHMT2-227ENST00000557269 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.23■□□□□ 0.67
SHMT2-227ENST00000557269 DEPDC5O75140 1603 aa19.22■□□□□ 0.67
SHMT2-227ENST00000557269 ADAMTSL3P82987 1691 aa19.22■□□□□ 0.67
SHMT2-227ENST00000557269 PCGF6Q9BYE7 350 aa19.22■□□□□ 0.67
SHMT2-227ENST00000557269 RAB3GAP2Q9H2M9 1393 aa19.21■□□□□ 0.67
SHMT2-227ENST00000557269 MADDQ8WXG6 1647 aa19.19■□□□□ 0.66
SHMT2-227ENST00000557269 PRDM15P57071 1507 aaPredicted RBP19.19■□□□□ 0.66
SHMT2-227ENST00000557269 UNC13BO14795 1591 aa19.19■□□□□ 0.66
SHMT2-227ENST00000557269 VWDEQ8N2E2 1590 aa19.16■□□□□ 0.66
SHMT2-227ENST00000557269 PPP6R1Q9UPN7 881 aa19.16■□□□□ 0.66
SHMT2-227ENST00000557269 WASHC2CQ9Y4E1 1318 aa19.16■□□□□ 0.66
SHMT2-227ENST00000557269 ABCC3O15438 1527 aa19.15■□□□□ 0.66
SHMT2-227ENST00000557269 CLTCQ00610 1675 aaKnown RBP19.15■□□□□ 0.66
SHMT2-227ENST00000557269 FER1L4A9Z1Z3 1794 aa19.15■□□□□ 0.66
SHMT2-227ENST00000557269 NUP155O75694 1391 aa19.15■□□□□ 0.66
SHMT2-227ENST00000557269 TRIM52Q96A61 297 aa19.14■□□□□ 0.65
SHMT2-227ENST00000557269 KDM5DQ9BY66 1539 aa19.14■□□□□ 0.65
SHMT2-227ENST00000557269 RIMS1Q86UR5 1692 aaKnown RBP19.14■□□□□ 0.65
SHMT2-227ENST00000557269 CEP152O94986 1710 aa19.13■□□□□ 0.65
SHMT2-227ENST00000557269 KANK1Q14678 1352 aa19.12■□□□□ 0.65
SHMT2-227ENST00000557269 ESF1Q9H501 851 aaKnown RBP19.12■□□□□ 0.65
SHMT2-227ENST00000557269 CEBPAP49715 358 aaPredicted RBP19.11■□□□□ 0.65
SHMT2-227ENST00000557269 IQGAP3Q86VI3 1631 aa19.11■□□□□ 0.65
SHMT2-227ENST00000557269 PZPP20742 1482 aa19.1■□□□□ 0.65
SHMT2-227ENST00000557269 ZMYM3Q14202 1370 aa19.1■□□□□ 0.65
SHMT2-227ENST00000557269 HRCP23327 699 aa19.1■□□□□ 0.65
SHMT2-227ENST00000557269 LMTK2Q8IWU2 1503 aa19.1■□□□□ 0.65
SHMT2-227ENST00000557269 FAM135AQ9P2D6 1515 aa19.1■□□□□ 0.65
SHMT2-227ENST00000557269 CNTLNQ9NXG0 1405 aa19.09■□□□□ 0.65
SHMT2-227ENST00000557269 ZC3H13Q5T200 1668 aaKnown RBP19.09■□□□□ 0.65
SHMT2-227ENST00000557269 PLPPR3Q6T4P5 718 aa19.09■□□□□ 0.65
SHMT2-227ENST00000557269 PTPRMP28827 1452 aa19.09■□□□□ 0.65
SHMT2-227ENST00000557269 CAMSAP1Q5T5Y3 1602 aa19.07■□□□□ 0.64
SHMT2-227ENST00000557269 MROH2AA6NES4 1674 aa19.06■□□□□ 0.64
SHMT2-227ENST00000557269 C3P01024 1663 aa19.06■□□□□ 0.64
SHMT2-227ENST00000557269 FBXO31Q5XUX0 539 aaPredicted RBP19.06■□□□□ 0.64
SHMT2-227ENST00000557269 TET3O43151 1660 aa19.05■□□□□ 0.64
SHMT2-227ENST00000557269 NPATQ14207 1427 aa19.04■□□□□ 0.64
SHMT2-227ENST00000557269 MPHOSPH9Q99550 1183 aa19.04■□□□□ 0.64
SHMT2-227ENST00000557269 SLC4A1APQ9BWU0 796 aaKnown RBP19.04■□□□□ 0.64
SHMT2-227ENST00000557269 EFCAB6Q5THR3 1501 aa19.04■□□□□ 0.64
SHMT2-227ENST00000557269 ARHGAP31Q2M1Z3 1444 aa19.02■□□□□ 0.64
SHMT2-227ENST00000557269 E9PCH4 1651 aa19.01■□□□□ 0.63
SHMT2-227ENST00000557269 PKD2Q13563 968 aa19.01■□□□□ 0.63
SHMT2-227ENST00000557269 FOXD1Q16676 465 aa19.01■□□□□ 0.63
SHMT2-227ENST00000557269 ACIN1Q9UKV3 1341 aaKnown RBP19■□□□□ 0.63
SHMT2-227ENST00000557269 ERVK-7P63135 1459 aa18.97■□□□□ 0.63
SHMT2-227ENST00000557269 CFAP65Q6ZU64 1925 aaKnown RBP18.97■□□□□ 0.63
SHMT2-227ENST00000557269 RPRD2Q5VT52 1461 aaKnown RBP18.97■□□□□ 0.63
SHMT2-227ENST00000557269 PREX1Q8TCU6 1659 aa18.95■□□□□ 0.62
SHMT2-227ENST00000557269 SPATA31D1Q6ZQQ2 1576 aa18.95■□□□□ 0.62
SHMT2-227ENST00000557269 NOS1P29475 1434 aa18.95■□□□□ 0.62
SHMT2-227ENST00000557269 PLA2R1Q13018 1463 aa18.94■□□□□ 0.62
SHMT2-227ENST00000557269 SYNMO15061 1565 aa18.93■□□□□ 0.62
SHMT2-227ENST00000557269 DHX57Q6P158 1386 aaKnown RBP18.93■□□□□ 0.62
SHMT2-227ENST00000557269 TNRQ92752 1358 aa18.93■□□□□ 0.62
SHMT2-227ENST00000557269 PTPRTO14522 1441 aa18.92■□□□□ 0.62
SHMT2-227ENST00000557269 UGGT1Q9NYU2 1555 aa18.89■□□□□ 0.62
SHMT2-227ENST00000557269 SPHKAPQ2M3C7 1700 aa18.88■□□□□ 0.61
SHMT2-227ENST00000557269 IDI1Q13907 227 aa18.87■□□□□ 0.61
SHMT2-227ENST00000557269 ANKRD30BQ9BXX2 1392 aa18.86■□□□□ 0.61
SHMT2-227ENST00000557269 MYO3AQ8NEV4 1616 aa18.85■□□□□ 0.61
SHMT2-227ENST00000557269 TRPM2O94759 1503 aa18.85■□□□□ 0.61
SHMT2-227ENST00000557269 PIK3C2BO00750 1634 aa18.84■□□□□ 0.61
SHMT2-227ENST00000557269 CLTCL1P53675 1640 aa18.84■□□□□ 0.61
SHMT2-227ENST00000557269 SETD1BQ9UPS6 1966 aaKnown RBP18.83■□□□□ 0.61
SHMT2-227ENST00000557269 SLC52A1Q9NWF4 448 aa18.83■□□□□ 0.6
SHMT2-227ENST00000557269 NLRP1Q9C000 1473 aa18.83■□□□□ 0.6
SHMT2-227ENST00000557269 AEBP2Q6ZN18 517 aaPredicted RBP18.82■□□□□ 0.6
SHMT2-227ENST00000557269 UHRF1BP1Q6BDS2 1440 aa18.82■□□□□ 0.6
SHMT2-227ENST00000557269 A2ML1A8K2U0 1454 aa18.81■□□□□ 0.6
SHMT2-227ENST00000557269 LMTK3Q96Q04 1460 aa18.81■□□□□ 0.6
SHMT2-227ENST00000557269 CEP170BQ9Y4F5 1589 aaPredicted RBP18.81■□□□□ 0.6
SHMT2-227ENST00000557269 CCDC144AA2RUR9 1427 aa18.78■□□□□ 0.6
SHMT2-227ENST00000557269 ZNF142P52746 1687 aaPredicted RBP18.78■□□□□ 0.6
SHMT2-227ENST00000557269 CHGAP10645 457 aaKnown RBP18.77■□□□□ 0.6
SHMT2-227ENST00000557269 HSPA2P54652 639 aa18.77■□□□□ 0.6
SHMT2-227ENST00000557269 SIN3AQ96ST3 1273 aa18.77■□□□□ 0.6
SHMT2-227ENST00000557269 TMEM131LA2VDJ0 1609 aa18.76■□□□□ 0.59
SHMT2-227ENST00000557269 UBR1Q8IWV7 1749 aa18.76■□□□□ 0.59
SHMT2-227ENST00000557269 ADGRB3O60242 1522 aa18.75■□□□□ 0.59
SHMT2-227ENST00000557269 STAG3Q9UJ98 1225 aa18.74■□□□□ 0.59
SHMT2-227ENST00000557269 MYO5BQ9ULV0 1848 aa18.73■□□□□ 0.59
SHMT2-227ENST00000557269 SPATA31E1Q6ZUB1 1445 aa18.73■□□□□ 0.59
SHMT2-227ENST00000557269 CCER1Q8TC90 406 aaPredicted RBP18.72■□□□□ 0.59
SHMT2-227ENST00000557269 NEUROD1Q13562 356 aa18.71■□□□□ 0.59
SHMT2-227ENST00000557269 THEMISQ8N1K5 641 aaPredicted RBP18.71■□□□□ 0.59
SHMT2-227ENST00000557269 KDM5AP29375 1690 aaKnown RBP18.7■□□□□ 0.58
SHMT2-227ENST00000557269 KIF1BO60333 1816 aa18.7■□□□□ 0.58
SHMT2-227ENST00000557269 RGL3Q3MIN7 710 aa18.7■□□□□ 0.58
SHMT2-227ENST00000557269 TMEM2Q9UHN6 1383 aa18.68■□□□□ 0.58
SHMT2-227ENST00000557269 ARHGAP23Q9P227 1491 aa18.67■□□□□ 0.58
SHMT2-227ENST00000557269 ZNF326Q5BKZ1 582 aaKnown RBP18.67■□□□□ 0.58
SHMT2-227ENST00000557269 NUTM2DQ5VT03 806 aaPredicted RBP18.67■□□□□ 0.58
SHMT2-227ENST00000557269 SLIT1O75093 1534 aa18.66■□□□□ 0.58
SHMT2-227ENST00000557269 LTKP29376 864 aa18.66■□□□□ 0.58
SHMT2-227ENST00000557269 ZFYVE9O95405 1425 aa18.66■□□□□ 0.58
SHMT2-227ENST00000557269 RIMS2Q9UQ26 1411 aa18.66■□□□□ 0.58
SHMT2-227ENST00000557269 NCKAP5LQ9HCH0 1330 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 122.8 ms