RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 REREQ9P2R6 1566 aa16■□□□□ 0.15
TDP1-211ENST00000555178 CEP152O94986 1710 aa16■□□□□ 0.15
TDP1-211ENST00000555178 PZPP20742 1482 aa15.99■□□□□ 0.15
TDP1-211ENST00000555178 RNF17Q9BXT8 1623 aaKnown RBP15.99■□□□□ 0.15
TDP1-211ENST00000555178 MLECQ14165 292 aa15.99■□□□□ 0.15
TDP1-211ENST00000555178 GGT6Q6P531 493 aa15.99■□□□□ 0.15
TDP1-211ENST00000555178 CFAP65Q6ZU64 1925 aaKnown RBP15.98■□□□□ 0.15
TDP1-211ENST00000555178 DHX57Q6P158 1386 aaKnown RBP15.98■□□□□ 0.15
TDP1-211ENST00000555178 FOXD1Q16676 465 aa15.98■□□□□ 0.15
TDP1-211ENST00000555178 CCER1Q8TC90 406 aaPredicted RBP15.98■□□□□ 0.15
TDP1-211ENST00000555178 NUP155O75694 1391 aa15.97■□□□□ 0.15
TDP1-211ENST00000555178 HRCP23327 699 aa15.96■□□□□ 0.15
TDP1-211ENST00000555178 AGLP35573 1532 aa15.95■□□□□ 0.14
TDP1-211ENST00000555178 IQGAP3Q86VI3 1631 aa15.95■□□□□ 0.14
TDP1-211ENST00000555178 PRDM15P57071 1507 aaPredicted RBP15.95■□□□□ 0.14
TDP1-211ENST00000555178 VWDEQ8N2E2 1590 aa15.95■□□□□ 0.14
TDP1-211ENST00000555178 FAM135AQ9P2D6 1515 aa15.94■□□□□ 0.14
TDP1-211ENST00000555178 KDM5DQ9BY66 1539 aa15.94■□□□□ 0.14
TDP1-211ENST00000555178 MPHOSPH9Q99550 1183 aa15.94■□□□□ 0.14
TDP1-211ENST00000555178 ARID4BQ4LE39 1312 aaPredicted RBP15.94■□□□□ 0.14
TDP1-211ENST00000555178 CLTCQ00610 1675 aaKnown RBP15.92■□□□□ 0.14
TDP1-211ENST00000555178 E9PCH4 1651 aa15.91■□□□□ 0.14
TDP1-211ENST00000555178 SLC4A1APQ9BWU0 796 aaKnown RBP15.91■□□□□ 0.14
TDP1-211ENST00000555178 ABCC3O15438 1527 aa15.9■□□□□ 0.14
TDP1-211ENST00000555178 PKD2Q13563 968 aa15.89■□□□□ 0.13
TDP1-211ENST00000555178 TET3O43151 1660 aa15.88■□□□□ 0.13
TDP1-211ENST00000555178 CAMSAP1Q5T5Y3 1602 aa15.88■□□□□ 0.13
TDP1-211ENST00000555178 WASHC2CQ9Y4E1 1318 aa15.86■□□□□ 0.13
TDP1-211ENST00000555178 FER1L4A9Z1Z3 1794 aa15.86■□□□□ 0.13
TDP1-211ENST00000555178 SIN3AQ96ST3 1273 aa15.84■□□□□ 0.13
TDP1-211ENST00000555178 MADDQ8WXG6 1647 aa15.84■□□□□ 0.13
TDP1-211ENST00000555178 EFCAB6Q5THR3 1501 aa15.84■□□□□ 0.13
TDP1-211ENST00000555178 KANK1Q14678 1352 aa15.83■□□□□ 0.13
TDP1-211ENST00000555178 LMTK2Q8IWU2 1503 aa15.83■□□□□ 0.13
TDP1-211ENST00000555178 ZC3H13Q5T200 1668 aaKnown RBP15.83■□□□□ 0.13
TDP1-211ENST00000555178 PLA2R1Q13018 1463 aa15.83■□□□□ 0.12
TDP1-211ENST00000555178 ADAMTSL3P82987 1691 aa15.83■□□□□ 0.12
TDP1-211ENST00000555178 NPATQ14207 1427 aa15.82■□□□□ 0.12
TDP1-211ENST00000555178 RIMS1Q86UR5 1692 aaKnown RBP15.82■□□□□ 0.12
TDP1-211ENST00000555178 FBXO31Q5XUX0 539 aaPredicted RBP15.82■□□□□ 0.12
TDP1-211ENST00000555178 UGGT1Q9NYU2 1555 aa15.8■□□□□ 0.12
TDP1-211ENST00000555178 CEBPAP49715 358 aaPredicted RBP15.8■□□□□ 0.12
TDP1-211ENST00000555178 SPHKAPQ2M3C7 1700 aa15.8■□□□□ 0.12
TDP1-211ENST00000555178 PLPPR3Q6T4P5 718 aa15.8■□□□□ 0.12
TDP1-211ENST00000555178 ANKRD30BQ9BXX2 1392 aa15.8■□□□□ 0.12
TDP1-211ENST00000555178 C3P01024 1663 aa15.79■□□□□ 0.12
TDP1-211ENST00000555178 PREX1Q8TCU6 1659 aa15.79■□□□□ 0.12
TDP1-211ENST00000555178 ZMYM3Q14202 1370 aa15.77■□□□□ 0.12
TDP1-211ENST00000555178 SYNMO15061 1565 aa15.77■□□□□ 0.11
TDP1-211ENST00000555178 NEUROD1Q13562 356 aa15.76■□□□□ 0.11
TDP1-211ENST00000555178 MROH2AA6NES4 1674 aa15.76■□□□□ 0.11
TDP1-211ENST00000555178 CLTCL1P53675 1640 aa15.75■□□□□ 0.11
TDP1-211ENST00000555178 KDM4FA0A1W2PPD8 638 aa15.74■□□□□ 0.11
TDP1-211ENST00000555178 PPP6R1Q9UPN7 881 aa15.74■□□□□ 0.11
TDP1-211ENST00000555178 PTPRTO14522 1441 aa15.74■□□□□ 0.11
TDP1-211ENST00000555178 ARHGAP31Q2M1Z3 1444 aa15.74■□□□□ 0.11
TDP1-211ENST00000555178 CLSPNQ9HAW4 1339 aa15.73■□□□□ 0.11
TDP1-211ENST00000555178 ACIN1Q9UKV3 1341 aaKnown RBP15.73■□□□□ 0.11
TDP1-211ENST00000555178 MYO5BQ9ULV0 1848 aa15.73■□□□□ 0.11
TDP1-211ENST00000555178 ESF1Q9H501 851 aaKnown RBP15.72■□□□□ 0.11
TDP1-211ENST00000555178 NOS1P29475 1434 aa15.72■□□□□ 0.11
TDP1-211ENST00000555178 ERVK-7P63135 1459 aa15.72■□□□□ 0.11
TDP1-211ENST00000555178 TRPM2O94759 1503 aa15.71■□□□□ 0.11
TDP1-211ENST00000555178 RPRD2Q5VT52 1461 aaKnown RBP15.71■□□□□ 0.1
TDP1-211ENST00000555178 SPATA31D1Q6ZQQ2 1576 aa15.69■□□□□ 0.1
TDP1-211ENST00000555178 PIK3C2BO00750 1634 aa15.69■□□□□ 0.1
TDP1-211ENST00000555178 CNTLNQ9NXG0 1405 aa15.69■□□□□ 0.1
TDP1-211ENST00000555178 PTPRMP28827 1452 aa15.67■□□□□ 0.1
TDP1-211ENST00000555178 ZEB1P37275 1124 aaPredicted RBP15.67■□□□□ 0.1
TDP1-211ENST00000555178 IDI1Q13907 227 aa15.67■□□□□ 0.1
TDP1-211ENST00000555178 KIF1BO60333 1816 aa15.67■□□□□ 0.1
TDP1-211ENST00000555178 CCDC144AA2RUR9 1427 aa15.66■□□□□ 0.1
TDP1-211ENST00000555178 RGL3Q3MIN7 710 aa15.64■□□□□ 0.09
TDP1-211ENST00000555178 SPATA31E1Q6ZUB1 1445 aa15.62■□□□□ 0.09
TDP1-211ENST00000555178 TNRQ92752 1358 aa15.62■□□□□ 0.09
TDP1-211ENST00000555178 TMEM131LA2VDJ0 1609 aa15.62■□□□□ 0.09
TDP1-211ENST00000555178 L3MBTL2Q969R5 705 aa15.62■□□□□ 0.09
TDP1-211ENST00000555178 CHGAP10645 457 aaKnown RBP15.61■□□□□ 0.09
TDP1-211ENST00000555178 MYO3AQ8NEV4 1616 aa15.61■□□□□ 0.09
TDP1-211ENST00000555178 UBR1Q8IWV7 1749 aa15.6■□□□□ 0.09
TDP1-211ENST00000555178 ADGRB3O60242 1522 aa15.59■□□□□ 0.09
TDP1-211ENST00000555178 SETD1BQ9UPS6 1966 aaKnown RBP15.58■□□□□ 0.08
TDP1-211ENST00000555178 TONSLQ96HA7 1378 aa15.58■□□□□ 0.08
TDP1-211ENST00000555178 IFT172Q9UG01 1749 aa15.58■□□□□ 0.08
TDP1-211ENST00000555178 NUTM2DQ5VT03 806 aaPredicted RBP15.58■□□□□ 0.08
TDP1-211ENST00000555178 SENP3Q9H4L4 574 aaPredicted RBP15.58■□□□□ 0.08
TDP1-211ENST00000555178 PPLO60437 1756 aa15.56■□□□□ 0.08
TDP1-211ENST00000555178 SLC52A1Q9NWF4 448 aa15.56■□□□□ 0.08
TDP1-211ENST00000555178 KDM2AQ9Y2K7 1162 aa15.56■□□□□ 0.08
TDP1-211ENST00000555178 A2ML1A8K2U0 1454 aa15.55■□□□□ 0.08
TDP1-211ENST00000555178 NBPF8Q3BBV2 869 aa15.54■□□□□ 0.08
TDP1-211ENST00000555178 DCAF11Q8TEB1 546 aa15.54■□□□□ 0.08
TDP1-211ENST00000555178 NEXMIFQ5QGS0 1516 aa15.53■□□□□ 0.08
TDP1-211ENST00000555178 CEP170BQ9Y4F5 1589 aaPredicted RBP15.53■□□□□ 0.08
TDP1-211ENST00000555178 ZNF326Q5BKZ1 582 aaKnown RBP15.52■□□□□ 0.08
TDP1-211ENST00000555178 ZNF142P52746 1687 aaPredicted RBP15.52■□□□□ 0.07
TDP1-211ENST00000555178 PPP1R15AO75807 674 aaPredicted RBP15.52■□□□□ 0.07
TDP1-211ENST00000555178 NLRP1Q9C000 1473 aa15.51■□□□□ 0.07
TDP1-211ENST00000555178 NEURL4Q96JN8 1562 aa15.5■□□□□ 0.07
TDP1-211ENST00000555178 STAG3Q9UJ98 1225 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms