RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 PBX2P40425 430 aa11.2□□□□□ -0.62
SCFD1-212ENST00000554486 PRKCSHP14314 528 aaPredicted RBP11.19□□□□□ -0.62
SCFD1-212ENST00000554486 KRTAP3-3Q9BYR6 98 aa11.19□□□□□ -0.62
SCFD1-212ENST00000554486 KRTAP3-2Q9BYR7 98 aa11.19□□□□□ -0.62
SCFD1-212ENST00000554486 PDIA6Q15084 440 aa11.17□□□□□ -0.62
SCFD1-212ENST00000554486 ZNF454Q8N9F8 522 aa11.17□□□□□ -0.62
SCFD1-212ENST00000554486 KCNH8Q96L42 1107 aa11.17□□□□□ -0.62
SCFD1-212ENST00000554486 HMGXB3Q12766 1538 aa11.17□□□□□ -0.62
SCFD1-212ENST00000554486 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.16□□□□□ -0.62
SCFD1-212ENST00000554486 BAZ1BQ9UIG0 1483 aaKnown RBP11.16□□□□□ -0.62
SCFD1-212ENST00000554486 MLLT3P42568 568 aaPredicted RBP11.15□□□□□ -0.62
SCFD1-212ENST00000554486 TOP2AP11388 1531 aaKnown RBP11.14□□□□□ -0.63
SCFD1-212ENST00000554486 SPDYE16A6NNV3 312 aaPredicted RBP11.14□□□□□ -0.63
SCFD1-212ENST00000554486 ARHGAP33O14559 1287 aa11.14□□□□□ -0.63
SCFD1-212ENST00000554486 JPH4Q96JJ6 628 aa11.14□□□□□ -0.63
SCFD1-212ENST00000554486 FOSBP53539 338 aa11.13□□□□□ -0.63
SCFD1-212ENST00000554486 SPNS2Q8IVW8 549 aa11.12□□□□□ -0.63
SCFD1-212ENST00000554486 TPRNQ4KMQ1 711 aa11.11□□□□□ -0.63
SCFD1-212ENST00000554486 ANKRD13DQ6ZTN6 518 aa11.11□□□□□ -0.63
SCFD1-212ENST00000554486 ZDHHC16Q969W1 377 aa11.11□□□□□ -0.63
SCFD1-212ENST00000554486 PHF14O94880 888 aa11.1□□□□□ -0.63
SCFD1-212ENST00000554486 LSM11P83369 360 aaKnown RBP eCLIP11.1□□□□□ -0.63
SCFD1-212ENST00000554486 AXIN2Q9Y2T1 843 aa11.1□□□□□ -0.63
SCFD1-212ENST00000554486 PTGER2P43116 358 aa11.09□□□□□ -0.63
SCFD1-212ENST00000554486 LMOD2Q6P5Q4 547 aa11.09□□□□□ -0.63
SCFD1-212ENST00000554486 BCL2L12Q9HB09 334 aa11.09□□□□□ -0.63
SCFD1-212ENST00000554486 POTEEQ6S8J3 1075 aa11.08□□□□□ -0.64
SCFD1-212ENST00000554486 FBXW7Q969H0 707 aa11.08□□□□□ -0.64
SCFD1-212ENST00000554486 EPAS1Q99814 870 aa11.08□□□□□ -0.64
SCFD1-212ENST00000554486 PTPREP23469 700 aa11.07□□□□□ -0.64
SCFD1-212ENST00000554486 TYW1BQ6NUM6 668 aa11.07□□□□□ -0.64
SCFD1-212ENST00000554486 PCDHGA10Q9Y5H3 936 aa11.06□□□□□ -0.64
SCFD1-212ENST00000554486 KCNK17Q96T54 332 aa11.05□□□□□ -0.64
SCFD1-212ENST00000554486 PSEN2P49810 448 aa11.04□□□□□ -0.64
SCFD1-212ENST00000554486 TK2O00142 265 aa11.03□□□□□ -0.64
SCFD1-212ENST00000554486 DDX12PQ92771 950 aa11.03□□□□□ -0.64
SCFD1-212ENST00000554486 CCDC88BA6NC98 1476 aa11.03□□□□□ -0.64
SCFD1-212ENST00000554486 MMRN1Q13201 1228 aa11.02□□□□□ -0.65
SCFD1-212ENST00000554486 RBM26Q5T8P6 1007 aaKnown RBP11.02□□□□□ -0.65
SCFD1-212ENST00000554486 ADAM33Q9BZ11 813 aa11.02□□□□□ -0.65
SCFD1-212ENST00000554486 PRIM1P49642 420 aaKnown RBP11.01□□□□□ -0.65
SCFD1-212ENST00000554486 OSBPP22059 807 aa11□□□□□ -0.65
SCFD1-212ENST00000554486 DMRTA1Q5VZB9 504 aa11□□□□□ -0.65
SCFD1-212ENST00000554486 ADGRD1Q6QNK2 874 aa11□□□□□ -0.65
SCFD1-212ENST00000554486 GRXCR2A6NFK2 248 aa10.99□□□□□ -0.65
SCFD1-212ENST00000554486 SMYD5Q6GMV2 418 aa10.99□□□□□ -0.65
SCFD1-212ENST00000554486 STAC3Q96MF2 364 aa10.99□□□□□ -0.65
SCFD1-212ENST00000554486 SLC4A5Q9BY07 1137 aa10.98□□□□□ -0.65
SCFD1-212ENST00000554486 MYT1LQ9UL68 1186 aa10.98□□□□□ -0.65
SCFD1-212ENST00000554486 ZC3H15Q8WU90 426 aaKnown RBP10.97□□□□□ -0.65
SCFD1-212ENST00000554486 C6orf132Q5T0Z8 1188 aa10.96□□□□□ -0.65
SCFD1-212ENST00000554486 PPP1R3GB7ZBB8 358 aa10.95□□□□□ -0.66
SCFD1-212ENST00000554486 TULP1O00294 542 aaPredicted RBP10.95□□□□□ -0.66
SCFD1-212ENST00000554486 RBM33Q96EV2 1170 aaKnown RBP10.95□□□□□ -0.66
SCFD1-212ENST00000554486 VPS9D1Q9Y2B5 631 aa10.94□□□□□ -0.66
SCFD1-212ENST00000554486 GPR37O15354 613 aa10.93□□□□□ -0.66
SCFD1-212ENST00000554486 MAP3K7O43318 606 aa10.93□□□□□ -0.66
SCFD1-212ENST00000554486 EN1Q05925 392 aaPredicted RBP10.93□□□□□ -0.66
SCFD1-212ENST00000554486 RNF166Q96A37 237 aaPredicted RBP10.93□□□□□ -0.66
SCFD1-212ENST00000554486 ZBED2Q9BTP6 218 aa10.92□□□□□ -0.66
SCFD1-212ENST00000554486 HRO43593 1189 aa10.91□□□□□ -0.66
SCFD1-212ENST00000554486 CADPSQ9ULU8 1353 aa10.9□□□□□ -0.67
SCFD1-212ENST00000554486 ZMYND10O75800 440 aa10.89□□□□□ -0.67
SCFD1-212ENST00000554486 CFTRP13569 1480 aa10.88□□□□□ -0.67
SCFD1-212ENST00000554486 NESP48681 1621 aa10.88□□□□□ -0.67
SCFD1-212ENST00000554486 COL9A1P20849 921 aa10.88□□□□□ -0.67
SCFD1-212ENST00000554486 CERKQ8TCT0 537 aa10.88□□□□□ -0.67
SCFD1-212ENST00000554486 ONECUT3O60422 494 aaPredicted RBP10.87□□□□□ -0.67
SCFD1-212ENST00000554486 GPIHBP1Q8IV16 184 aa10.87□□□□□ -0.67
SCFD1-212ENST00000554486 NBPF3Q9H094 633 aa10.87□□□□□ -0.67
SCFD1-212ENST00000554486 RABGEF1Q9UJ41 708 aa10.86□□□□□ -0.67
SCFD1-212ENST00000554486 LAMC3Q9Y6N6 1575 aa10.86□□□□□ -0.67
SCFD1-212ENST00000554486 TSR1Q2NL82 804 aaKnown RBP10.85□□□□□ -0.67
SCFD1-212ENST00000554486 GOLGA8CPA6NN73 597 aa10.84□□□□□ -0.67
SCFD1-212ENST00000554486 BHMG1C9JSJ3 638 aaPredicted RBP10.84□□□□□ -0.67
SCFD1-212ENST00000554486 BARGINQ6ZT62 677 aa10.84□□□□□ -0.67
SCFD1-212ENST00000554486 MRPL50Q8N5N7 158 aaKnown RBP10.84□□□□□ -0.67
SCFD1-212ENST00000554486 NPDC1Q9NQX5 325 aaPredicted RBP10.84□□□□□ -0.67
SCFD1-212ENST00000554486 PRDM2Q13029 1718 aa10.84□□□□□ -0.67
SCFD1-212ENST00000554486 PROX2Q3B8N5 592 aa10.83□□□□□ -0.68
SCFD1-212ENST00000554486 CDHR5Q9HBB8 845 aa10.83□□□□□ -0.68
SCFD1-212ENST00000554486 NUTM2FA1L443 756 aa10.82□□□□□ -0.68
SCFD1-212ENST00000554486 TRIM6-TRIM34B2RNG4 842 aa10.81□□□□□ -0.68
SCFD1-212ENST00000554486 PACS2Q86VP3 889 aa10.81□□□□□ -0.68
SCFD1-212ENST00000554486 PTGDRQ13258 359 aa10.8□□□□□ -0.68
SCFD1-212ENST00000554486 SLC24A3Q9HC58 644 aa10.8□□□□□ -0.68
SCFD1-212ENST00000554486 KIAA1468Q9P260 1216 aa10.8□□□□□ -0.68
SCFD1-212ENST00000554486 FECHP22830 423 aa10.79□□□□□ -0.68
SCFD1-212ENST00000554486 PRSS12P56730 875 aa10.78□□□□□ -0.68
SCFD1-212ENST00000554486 LAPTM4BQ86VI4 370 aa10.78□□□□□ -0.68
SCFD1-212ENST00000554486 KCTD12Q96CX2 325 aaKnown RBP10.78□□□□□ -0.68
SCFD1-212ENST00000554486 PDS5BQ9NTI5 1447 aa10.77□□□□□ -0.68
SCFD1-212ENST00000554486 CDCA7LQ96GN5 454 aa10.77□□□□□ -0.69
SCFD1-212ENST00000554486 HCSTQ9UBK5 93 aa10.77□□□□□ -0.69
SCFD1-212ENST00000554486 FANCD2Q9BXW9 1451 aa10.76□□□□□ -0.69
SCFD1-212ENST00000554486 KIF21AQ7Z4S6 1674 aa10.76□□□□□ -0.69
SCFD1-212ENST00000554486 FCHSD2O94868 740 aa10.75□□□□□ -0.69
SCFD1-212ENST00000554486 WNT2BQ93097 391 aa10.75□□□□□ -0.69
SCFD1-212ENST00000554486 RBM27Q9P2N5 1060 aaKnown RBP10.75□□□□□ -0.69
SCFD1-212ENST00000554486 GNPATO15228 680 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms