RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 HIRIP3Q9BW71 556 aaPredicted RBP37.24■■■■□ 3.55
CCDC88C-205ENST00000553403 EIF4G2P78344 907 aaKnown RBP eCLIP37.21■■■■□ 3.551e-8■■■■■ 46.2
CCDC88C-205ENST00000553403 ZNF518AQ6AHZ1 1483 aa37.21■■■■□ 3.55
CCDC88C-205ENST00000553403 MAP3K4Q9Y6R4 1608 aa37.2■■■■□ 3.55
CCDC88C-205ENST00000553403 HSPA5P11021 654 aaKnown RBP37.18■■■■□ 3.54
CCDC88C-205ENST00000553403 PPRC1Q5VV67 1664 aaKnown RBP37.18■■■■□ 3.54
CCDC88C-205ENST00000553403 DEPDC5O75140 1603 aa37.18■■■■□ 3.54
CCDC88C-205ENST00000553403 DDX10Q13206 875 aaKnown RBP37.18■■■■□ 3.54
CCDC88C-205ENST00000553403 UHRF1BP1Q6BDS2 1440 aa37.17■■■■□ 3.54
CCDC88C-205ENST00000553403 ATP10AO60312 1499 aa37.16■■■■□ 3.54
CCDC88C-205ENST00000553403 EIF2AK4Q9P2K8 1649 aaKnown RBP37.16■■■■□ 3.54
CCDC88C-205ENST00000553403 NEO1Q92859 1461 aa37.14■■■■□ 3.54
CCDC88C-205ENST00000553403 DHX29Q7Z478 1369 aaKnown RBP37.14■■■■□ 3.54
CCDC88C-205ENST00000553403 CCDC144AA2RUR9 1427 aa37.14■■■■□ 3.54
CCDC88C-205ENST00000553403 PLA2R1Q13018 1463 aa37.14■■■■□ 3.54
CCDC88C-205ENST00000553403 POGZQ7Z3K3 1410 aa37.12■■■■□ 3.53
CCDC88C-205ENST00000553403 KIDINS220Q9ULH0 1771 aa37.12■■■■□ 3.53
CCDC88C-205ENST00000553403 KDM5CP41229 1560 aa37.11■■■■□ 3.53
CCDC88C-205ENST00000553403 CENPBP07199 599 aaPredicted RBP37.11■■■■□ 3.53
CCDC88C-205ENST00000553403 MYT1LQ9UL68 1186 aa37.07■■■■□ 3.52
CCDC88C-205ENST00000553403 VWDEQ8N2E2 1590 aa37.06■■■■□ 3.52
CCDC88C-205ENST00000553403 MLH3Q9UHC1 1453 aa37.06■■■■□ 3.52
CCDC88C-205ENST00000553403 SPATA31E1Q6ZUB1 1445 aa37.04■■■■□ 3.52
CCDC88C-205ENST00000553403 KANK1Q14678 1352 aa37.03■■■■□ 3.52
CCDC88C-205ENST00000553403 RALGAPBQ86X10 1494 aa37.02■■■■□ 3.52
CCDC88C-205ENST00000553403 TET3O43151 1660 aa37■■■■□ 3.51
CCDC88C-205ENST00000553403 PRDM15P57071 1507 aaPredicted RBP37■■■■□ 3.51
CCDC88C-205ENST00000553403 HECW2Q9P2P5 1572 aa36.98■■■■□ 3.51
CCDC88C-205ENST00000553403 E9PCH4 1651 aa36.98■■■■□ 3.51
CCDC88C-205ENST00000553403 KIF3BO15066 747 aa36.97■■■■□ 3.51
CCDC88C-205ENST00000553403 A2MP01023 1474 aa36.97■■■■□ 3.51
CCDC88C-205ENST00000553403 MROH1Q8NDA8 1641 aa36.95■■■■□ 3.51
CCDC88C-205ENST00000553403 WASHC2AQ641Q2 1341 aa36.94■■■■□ 3.5
CCDC88C-205ENST00000553403 DCAF11Q8TEB1 546 aa36.93■■■■□ 3.5
CCDC88C-205ENST00000553403 PTPRTO14522 1441 aa36.92■■■■□ 3.5
CCDC88C-205ENST00000553403 ZNF326Q5BKZ1 582 aaKnown RBP36.92■■■■□ 3.5
CCDC88C-205ENST00000553403 COL17A1Q9UMD9 1497 aaPredicted RBP36.91■■■■□ 3.5
CCDC88C-205ENST00000553403 TRPM2O94759 1503 aa36.91■■■■□ 3.5
CCDC88C-205ENST00000553403 RNF17Q9BXT8 1623 aaKnown RBP36.9■■■■□ 3.5
CCDC88C-205ENST00000553403 YTHDC1Q96MU7 727 aaKnown RBP36.89■■■■□ 3.5
CCDC88C-205ENST00000553403 KDM2AQ9Y2K7 1162 aa36.86■■■■□ 3.49
CCDC88C-205ENST00000553403 SPHKAPQ2M3C7 1700 aa36.86■■■■□ 3.49
CCDC88C-205ENST00000553403 USP47Q96K76 1375 aa36.86■■■■□ 3.49
CCDC88C-205ENST00000553403 CCDC7Q96M83 1385 aa36.86■■■■□ 3.49
CCDC88C-205ENST00000553403 POLR1AO95602 1720 aaPredicted RBP36.85■■■■□ 3.49
CCDC88C-205ENST00000553403 BCORL1Q5H9F3 1711 aa36.85■■■■□ 3.49
CCDC88C-205ENST00000553403 LMTK2Q8IWU2 1503 aa36.85■■■■□ 3.49
CCDC88C-205ENST00000553403 PRAG1Q86YV5 1406 aa36.85■■■■□ 3.49
CCDC88C-205ENST00000553403 FRMPD1Q5SYB0 1578 aa36.84■■■■□ 3.49
CCDC88C-205ENST00000553403 ANP32CO43423 234 aa36.83■■■■□ 3.49
CCDC88C-205ENST00000553403 ABCA6Q8N139 1617 aa36.82■■■■□ 3.48
CCDC88C-205ENST00000553403 RICTORQ6R327 1708 aa36.81■■■■□ 3.48
CCDC88C-205ENST00000553403 C11orf95C9JLR9 678 aaPredicted RBP36.78■■■■□ 3.48
CCDC88C-205ENST00000553403 RGL3Q3MIN7 710 aa36.78■■■■□ 3.48
CCDC88C-205ENST00000553403 TRPM1Q7Z4N2 1603 aa36.78■■■■□ 3.48
CCDC88C-205ENST00000553403 EFCAB6Q5THR3 1501 aa36.77■■■■□ 3.48
CCDC88C-205ENST00000553403 CCER2I3L3R5 266 aa36.77■■■■□ 3.48
CCDC88C-205ENST00000553403 CARD11Q9BXL7 1154 aa36.77■■■■□ 3.48
CCDC88C-205ENST00000553403 CEP152O94986 1710 aa36.76■■■■□ 3.48
CCDC88C-205ENST00000553403 RAPGEF3O95398 923 aa36.76■■■■□ 3.47
CCDC88C-205ENST00000553403 CNTLNQ9NXG0 1405 aa36.75■■■■□ 3.47
CCDC88C-205ENST00000553403 CLTCL1P53675 1640 aa36.74■■■■□ 3.47
CCDC88C-205ENST00000553403 NEURL4Q96JN8 1562 aa36.73■■■■□ 3.47
CCDC88C-205ENST00000553403 DIP2CQ9Y2E4 1556 aa36.73■■■■□ 3.47
CCDC88C-205ENST00000553403 KIF7Q2M1P5 1343 aa36.71■■■■□ 3.47
CCDC88C-205ENST00000553403 ARID4BQ4LE39 1312 aaPredicted RBP36.71■■■■□ 3.47
CCDC88C-205ENST00000553403 ROCK2O75116 1388 aaKnown RBP36.71■■■■□ 3.47
CCDC88C-205ENST00000553403 STAC3Q96MF2 364 aa36.7■■■■□ 3.47
CCDC88C-205ENST00000553403 GPRASP1Q5JY77 1395 aa36.7■■■■□ 3.47
CCDC88C-205ENST00000553403 LAMC1P11047 1609 aa36.69■■■■□ 3.46
CCDC88C-205ENST00000553403 KDM4FA0A1W2PPD8 638 aa36.67■■■■□ 3.46
CCDC88C-205ENST00000553403 ZMYM4Q5VZL5 1548 aa36.64■■■■□ 3.46
CCDC88C-205ENST00000553403 ABCC3O15438 1527 aa36.58■■■■□ 3.45
CCDC88C-205ENST00000553403 GGT6Q6P531 493 aa36.57■■■■□ 3.44
CCDC88C-205ENST00000553403 YEATS2Q9ULM3 1422 aa36.55■■■■□ 3.44
CCDC88C-205ENST00000553403 MADDQ8WXG6 1647 aa36.55■■■■□ 3.44
CCDC88C-205ENST00000553403 SCAF1Q9H7N4 1312 aaKnown RBP36.54■■■■□ 3.44
CCDC88C-205ENST00000553403 ST20-MTHFSA0A0A6YYL1 179 aa36.53■■■■□ 3.44
CCDC88C-205ENST00000553403 NBPF1Q3BBV0 1214 aa36.52■■■■□ 3.44
CCDC88C-205ENST00000553403 NPATQ14207 1427 aa36.52■■■■□ 3.44
CCDC88C-205ENST00000553403 KIF1BO60333 1816 aa36.51■■■■□ 3.43
CCDC88C-205ENST00000553403 WASHC2CQ9Y4E1 1318 aa36.5■■■■□ 3.43
CCDC88C-205ENST00000553403 ZC3H13Q5T200 1668 aaKnown RBP36.48■■■■□ 3.43
CCDC88C-205ENST00000553403 CAMSAP1Q5T5Y3 1602 aa36.48■■■■□ 3.43
CCDC88C-205ENST00000553403 UGGT1Q9NYU2 1555 aa36.47■■■■□ 3.43
CCDC88C-205ENST00000553403 MYOM2P54296 1465 aa36.44■■■■□ 3.42
CCDC88C-205ENST00000553403 REREQ9P2R6 1566 aa36.42■■■■□ 3.42
CCDC88C-205ENST00000553403 ARHGAP31Q2M1Z3 1444 aa36.42■■■■□ 3.42
CCDC88C-205ENST00000553403 ADGRB3O60242 1522 aa36.4■■■■□ 3.42
CCDC88C-205ENST00000553403 KIAA1210Q9ULL0 1709 aa36.4■■■■□ 3.42
CCDC88C-205ENST00000553403 NOS1P29475 1434 aa36.39■■■■□ 3.42
CCDC88C-205ENST00000553403 IFT172Q9UG01 1749 aa36.37■■■■□ 3.41
CCDC88C-205ENST00000553403 PRKRIP1Q9H875 184 aaPredicted RBP36.37■■■■□ 3.41
CCDC88C-205ENST00000553403 MROH2AA6NES4 1674 aa36.36■■■■□ 3.41
CCDC88C-205ENST00000553403 AGLP35573 1532 aa36.33■■■■□ 3.41
CCDC88C-205ENST00000553403 POLR3GLQ9BT43 218 aa36.32■■■■□ 3.41
CCDC88C-205ENST00000553403 IQGAP1P46940 1657 aa36.32■■■■□ 3.41
CCDC88C-205ENST00000553403 NRXN1Q9ULB1 1477 aa36.3■■■■□ 3.4
CCDC88C-205ENST00000553403 SIGLEC1Q9BZZ2 1709 aa36.3■■■■□ 3.4
CCDC88C-205ENST00000553403 GTF3C3Q9Y5Q9 886 aa36.29■■■■□ 3.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms