RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 RBM19Q9Y4C8 960 aaKnown RBP7.53□□□□□ -1.2
LIMA1-215ENST00000552823 TRAPPC8Q9Y2L5 1435 aa7.53□□□□□ -1.2
LIMA1-215ENST00000552823 DNMT1P26358 1616 aaKnown RBP7.53□□□□□ -1.2
LIMA1-215ENST00000552823 CCDC146Q8IYE0 955 aa7.53□□□□□ -1.2
LIMA1-215ENST00000552823 OSCARQ8IYS5 282 aa7.53□□□□□ -1.2
LIMA1-215ENST00000552823 SYCP2Q9BX26 1530 aa7.52□□□□□ -1.21
LIMA1-215ENST00000552823 RSPH4AQ5TD94 716 aa7.52□□□□□ -1.21
LIMA1-215ENST00000552823 TEX14Q8IWB6 1497 aa7.52□□□□□ -1.21
LIMA1-215ENST00000552823 CCDC136Q96JN2 1154 aa7.51□□□□□ -1.21
LIMA1-215ENST00000552823 ABCC10Q5T3U5 1492 aa7.51□□□□□ -1.21
LIMA1-215ENST00000552823 TMF1P82094 1093 aa7.51□□□□□ -1.21
LIMA1-215ENST00000552823 KNSTRNQ9Y448 316 aa7.51□□□□□ -1.21
LIMA1-215ENST00000552823 NPM2Q86SE8 214 aaKnown RBP7.51□□□□□ -1.21
LIMA1-215ENST00000552823 SKAP1Q86WV1 359 aa7.51□□□□□ -1.21
LIMA1-215ENST00000552823 CCDC141Q6ZP82 1450 aa7.5□□□□□ -1.21
LIMA1-215ENST00000552823 PNISRQ8TF01 805 aaKnown RBP7.5□□□□□ -1.21
LIMA1-215ENST00000552823 MBD5Q9P267 1494 aa7.5□□□□□ -1.21
LIMA1-215ENST00000552823 ABCA8O94911 1581 aa7.49□□□□□ -1.21
LIMA1-215ENST00000552823 ERICH6Q7L0X2 663 aa7.49□□□□□ -1.21
LIMA1-215ENST00000552823 BCL11AQ9H165 835 aa7.49□□□□□ -1.21
LIMA1-215ENST00000552823 STAG3Q9UJ98 1225 aa7.49□□□□□ -1.21
LIMA1-215ENST00000552823 GCC2Q8IWJ2 1684 aa7.49□□□□□ -1.21
LIMA1-215ENST00000552823 DISP3Q9P2K9 1392 aa7.48□□□□□ -1.21
LIMA1-215ENST00000552823 WASHC2CQ9Y4E1 1318 aa7.48□□□□□ -1.21
LIMA1-215ENST00000552823 ARHGEF12Q9NZN5 1544 aa7.48□□□□□ -1.21
LIMA1-215ENST00000552823 PPP4R2Q9NY27 417 aa7.48□□□□□ -1.21
LIMA1-215ENST00000552823 ADGRF5Q8IZF2 1346 aa7.48□□□□□ -1.21
LIMA1-215ENST00000552823 CFAP65Q6ZU64 1925 aaKnown RBP7.48□□□□□ -1.21
LIMA1-215ENST00000552823 SPATA31E1Q6ZUB1 1445 aa7.48□□□□□ -1.21
LIMA1-215ENST00000552823 WDR43Q15061 677 aaKnown RBP eCLIP7.47□□□□□ -1.21
LIMA1-215ENST00000552823 ZBED9Q6R2W3 1325 aa7.47□□□□□ -1.21
LIMA1-215ENST00000552823 CHD1O14646 1710 aa7.47□□□□□ -1.21
LIMA1-215ENST00000552823 DHX29Q7Z478 1369 aaKnown RBP7.47□□□□□ -1.21
LIMA1-215ENST00000552823 KTN1Q86UP2 1357 aaKnown RBP7.47□□□□□ -1.21
LIMA1-215ENST00000552823 EXOC6Q8TAG9 804 aa7.47□□□□□ -1.21
LIMA1-215ENST00000552823 NUDCQ9Y266 331 aa7.47□□□□□ -1.21
LIMA1-215ENST00000552823 RRP7AQ9Y3A4 280 aaKnown RBP7.47□□□□□ -1.21
LIMA1-215ENST00000552823 ADAMTS8Q9UP79 889 aa7.46□□□□□ -1.21
LIMA1-215ENST00000552823 MYBBP1AQ9BQG0 1328 aaKnown RBP7.46□□□□□ -1.21
LIMA1-215ENST00000552823 TESK2Q96S53 571 aa7.46□□□□□ -1.22
LIMA1-215ENST00000552823 TTC37Q6PGP7 1564 aa7.46□□□□□ -1.22
LIMA1-215ENST00000552823 CDC42BPAQ5VT25 1732 aa7.46□□□□□ -1.22
LIMA1-215ENST00000552823 NLRP13Q86W25 1043 aa7.46□□□□□ -1.22
LIMA1-215ENST00000552823 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.45□□□□□ -1.22
LIMA1-215ENST00000552823 FAM135AQ9P2D6 1515 aa7.45□□□□□ -1.22
LIMA1-215ENST00000552823 SAMD9LQ8IVG5 1584 aa7.45□□□□□ -1.22
LIMA1-215ENST00000552823 PLEKHG5O94827 1062 aa7.45□□□□□ -1.22
LIMA1-215ENST00000552823 RALBP1Q15311 655 aa7.45□□□□□ -1.22
LIMA1-215ENST00000552823 SLC12A5Q9H2X9 1139 aa7.45□□□□□ -1.22
LIMA1-215ENST00000552823 KANK1Q14678 1352 aa7.45□□□□□ -1.22
LIMA1-215ENST00000552823 PLA2R1Q13018 1463 aa7.44□□□□□ -1.22
LIMA1-215ENST00000552823 PLCH2O75038 1416 aa7.44□□□□□ -1.22
LIMA1-215ENST00000552823 PPM1GO15355 546 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-215ENST00000552823 ITSN2Q9NZM3 1697 aa7.44□□□□□ -1.22
LIMA1-215ENST00000552823 ADGRL2O95490 1459 aa7.44□□□□□ -1.22
LIMA1-215ENST00000552823 NUTM2FA1L443 756 aa7.44□□□□□ -1.22
LIMA1-215ENST00000552823 FAM69CQ0P6D2 419 aa7.44□□□□□ -1.22
LIMA1-215ENST00000552823 RCAN3Q9UKA8 241 aa7.44□□□□□ -1.22
LIMA1-215ENST00000552823 FBXO31Q5XUX0 539 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-215ENST00000552823 BCORL1Q5H9F3 1711 aa7.43□□□□□ -1.22
LIMA1-215ENST00000552823 PER1O15534 1290 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-215ENST00000552823 APAF1O14727 1248 aa7.42□□□□□ -1.22
LIMA1-215ENST00000552823 CABP2Q9NPB3 220 aa7.42□□□□□ -1.22
LIMA1-215ENST00000552823 A2MP01023 1474 aa7.42□□□□□ -1.22
LIMA1-215ENST00000552823 PRAG1Q86YV5 1406 aa7.42□□□□□ -1.22
LIMA1-215ENST00000552823 ABCC2Q92887 1545 aa7.42□□□□□ -1.22
LIMA1-215ENST00000552823 FANCAO15360 1455 aa7.42□□□□□ -1.22
LIMA1-215ENST00000552823 FBLN1P23142 703 aa7.42□□□□□ -1.22
LIMA1-215ENST00000552823 ARID4BQ4LE39 1312 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-215ENST00000552823 MINK1Q8N4C8 1332 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-215ENST00000552823 ASXL2Q76L83 1435 aa7.41□□□□□ -1.22
LIMA1-215ENST00000552823 PPP2R1AP30153 589 aa7.41□□□□□ -1.22
LIMA1-215ENST00000552823 SRPK2P78362 688 aaKnown RBP7.41□□□□□ -1.22
LIMA1-215ENST00000552823 ADGRL1O94910 1474 aa7.41□□□□□ -1.22
LIMA1-215ENST00000552823 ERBINQ96RT1 1412 aa7.41□□□□□ -1.22
LIMA1-215ENST00000552823 NBR1Q14596 966 aa7.41□□□□□ -1.22
LIMA1-215ENST00000552823 SOX12O15370 315 aa7.4□□□□□ -1.22
LIMA1-215ENST00000552823 C20orf194Q5TEA3 1177 aa7.4□□□□□ -1.22
LIMA1-215ENST00000552823 MORC1Q86VD1 984 aa7.4□□□□□ -1.22
LIMA1-215ENST00000552823 CDC42BPBQ9Y5S2 1711 aa7.4□□□□□ -1.22
LIMA1-215ENST00000552823 BCL2L13Q9BXK5 485 aa7.4□□□□□ -1.22
LIMA1-215ENST00000552823 POGKQ9P215 609 aa7.4□□□□□ -1.22
LIMA1-215ENST00000552823 U2SURPO15042 1029 aaKnown RBP7.4□□□□□ -1.23
LIMA1-215ENST00000552823 UGGT1Q9NYU2 1555 aa7.4□□□□□ -1.23
LIMA1-215ENST00000552823 RALGAPBQ86X10 1494 aa7.39□□□□□ -1.23
LIMA1-215ENST00000552823 MSH5O43196 834 aa7.39□□□□□ -1.23
LIMA1-215ENST00000552823 CANXP27824 592 aaKnown RBP7.39□□□□□ -1.23
LIMA1-215ENST00000552823 FRAT1Q92837 279 aaPredicted RBP7.39□□□□□ -1.23
LIMA1-215ENST00000552823 CRBNQ96SW2 442 aa7.39□□□□□ -1.23
LIMA1-215ENST00000552823 CD109Q6YHK3 1445 aa7.39□□□□□ -1.23
LIMA1-215ENST00000552823 RGS3P49796 1198 aa7.39□□□□□ -1.23
LIMA1-215ENST00000552823 IDI1Q13907 227 aa7.39□□□□□ -1.23
LIMA1-215ENST00000552823 RRP1P56182 461 aaKnown RBP7.38□□□□□ -1.23
LIMA1-215ENST00000552823 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.38□□□□□ -1.23
LIMA1-215ENST00000552823 GGNBP2Q9H3C7 697 aa7.38□□□□□ -1.23
LIMA1-215ENST00000552823 CARD14Q9BXL6 1004 aa7.38□□□□□ -1.23
LIMA1-215ENST00000552823 ESF1Q9H501 851 aaKnown RBP7.38□□□□□ -1.23
LIMA1-215ENST00000552823 SHANK2Q9UPX8 1470 aa7.38□□□□□ -1.23
LIMA1-215ENST00000552823 ADGBQ8N7X0 1667 aa7.37□□□□□ -1.23
LIMA1-215ENST00000552823 CDCA8Q53HL2 280 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms