RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 ATAD2BQ9ULI0 1458 aa9.01□□□□□ -0.97
CHMP4A-210ENST00000552620 ZNF316A6NFI3 1004 aaPredicted RBP9□□□□□ -0.97
CHMP4A-210ENST00000552620 CEP164Q9UPV0 1460 aa9□□□□□ -0.97
CHMP4A-210ENST00000552620 OXER1Q8TDS5 423 aa8.99□□□□□ -0.97
CHMP4A-210ENST00000552620 TMEM92Q6UXU6 159 aa8.98□□□□□ -0.97
CHMP4A-210ENST00000552620 RUSC2Q8N2Y8 1516 aa8.98□□□□□ -0.97
CHMP4A-210ENST00000552620 KIF21BO75037 1637 aa8.98□□□□□ -0.97
CHMP4A-210ENST00000552620 NUTM2FA1L443 756 aa8.97□□□□□ -0.97
CHMP4A-210ENST00000552620 BAZ1BQ9UIG0 1483 aaKnown RBP8.96□□□□□ -0.97
CHMP4A-210ENST00000552620 PTGER2P43116 358 aa8.96□□□□□ -0.98
CHMP4A-210ENST00000552620 FAM163AQ96GL9 167 aaPredicted RBP8.96□□□□□ -0.98
CHMP4A-210ENST00000552620 GPR37O15354 613 aa8.94□□□□□ -0.98
CHMP4A-210ENST00000552620 TRIM66O15016 1216 aa8.93□□□□□ -0.98
CHMP4A-210ENST00000552620 SNPHO15079 494 aa8.93□□□□□ -0.98
CHMP4A-210ENST00000552620 EVI5O60447 810 aa8.93□□□□□ -0.98
CHMP4A-210ENST00000552620 OSBPP22059 807 aa8.93□□□□□ -0.98
CHMP4A-210ENST00000552620 C14orf37Q86TY3 774 aa8.93□□□□□ -0.98
CHMP4A-210ENST00000552620 DDX12PQ92771 950 aa8.93□□□□□ -0.98
CHMP4A-210ENST00000552620 MINK1Q8N4C8 1332 aaPredicted RBP8.93□□□□□ -0.98
CHMP4A-210ENST00000552620 SYNJ1O43426 1573 aa8.93□□□□□ -0.98
CHMP4A-210ENST00000552620 CLIP1P30622 1438 aa8.92□□□□□ -0.98
CHMP4A-210ENST00000552620 FCHSD2O94868 740 aa8.92□□□□□ -0.98
CHMP4A-210ENST00000552620 PDE4DQ08499 809 aa8.92□□□□□ -0.98
CHMP4A-210ENST00000552620 GNPATO15228 680 aa8.91□□□□□ -0.98
CHMP4A-210ENST00000552620 MAP2K5Q13163 448 aa8.91□□□□□ -0.98
CHMP4A-210ENST00000552620 HIC1Q14526 733 aa8.91□□□□□ -0.98
CHMP4A-210ENST00000552620 LCE2DQ5TA82 110 aaPredicted RBP8.91□□□□□ -0.98
CHMP4A-210ENST00000552620 PTCD2Q8WV60 388 aaKnown RBP8.91□□□□□ -0.98
CHMP4A-210ENST00000552620 GPBP1L1Q9HC44 474 aaPredicted RBP8.91□□□□□ -0.98
CHMP4A-210ENST00000552620 VPS8Q8N3P4 1428 aa8.9□□□□□ -0.98
CHMP4A-210ENST00000552620 DIEXFQ68CQ4 756 aaKnown RBP8.9□□□□□ -0.98
CHMP4A-210ENST00000552620 KDM4CQ9H3R0 1056 aa8.9□□□□□ -0.98
CHMP4A-210ENST00000552620 SLC34A2O95436 690 aa8.89□□□□□ -0.99
CHMP4A-210ENST00000552620 TOP2BQ02880 1626 aa8.88□□□□□ -0.99
CHMP4A-210ENST00000552620 NCAPD3P42695 1498 aa8.88□□□□□ -0.99
CHMP4A-210ENST00000552620 IRF6O14896 467 aa8.87□□□□□ -0.99
CHMP4A-210ENST00000552620 ST18O60284 1047 aa8.87□□□□□ -0.99
CHMP4A-210ENST00000552620 CENPBP07199 599 aaPredicted RBP8.87□□□□□ -0.99
CHMP4A-210ENST00000552620 CCDC102AQ96A19 550 aa8.87□□□□□ -0.99
CHMP4A-210ENST00000552620 ACIN1Q9UKV3 1341 aaKnown RBP8.86□□□□□ -0.99
CHMP4A-210ENST00000552620 POTEMA6NI47 508 aa8.86□□□□□ -0.99
CHMP4A-210ENST00000552620 POTEGQ6S5H5 508 aa8.86□□□□□ -0.99
CHMP4A-210ENST00000552620 BIVM-ERCC5R4GMW8 1640 aa8.85□□□□□ -0.99
CHMP4A-210ENST00000552620 IL27Q8NEV9 243 aa8.85□□□□□ -0.99
CHMP4A-210ENST00000552620 EPAS1Q99814 870 aa8.85□□□□□ -0.99
CHMP4A-210ENST00000552620 ANO8Q9HCE9 1232 aaPredicted RBP8.85□□□□□ -0.99
CHMP4A-210ENST00000552620 HMGXB3Q12766 1538 aa8.85□□□□□ -0.99
CHMP4A-210ENST00000552620 ERICH3Q5RHP9 1530 aa8.85□□□□□ -0.99
CHMP4A-210ENST00000552620 TTBK1Q5TCY1 1321 aaPredicted RBP8.84□□□□□ -0.99
CHMP4A-210ENST00000552620 RAPGEF2Q9Y4G8 1499 aa8.84□□□□□ -0.99
CHMP4A-210ENST00000552620 PHF14O94880 888 aa8.83□□□□□ -1
CHMP4A-210ENST00000552620 PTGDRQ13258 359 aa8.83□□□□□ -1
CHMP4A-210ENST00000552620 AMHR2Q16671 573 aa8.83□□□□□ -1
CHMP4A-210ENST00000552620 PRXQ9BXM0 1461 aa8.83□□□□□ -1
CHMP4A-210ENST00000552620 CLSPNQ9HAW4 1339 aa8.82□□□□□ -1
CHMP4A-210ENST00000552620 EN1Q05925 392 aaPredicted RBP8.81□□□□□ -1
CHMP4A-210ENST00000552620 DDRGK1Q96HY6 314 aa8.81□□□□□ -1
CHMP4A-210ENST00000552620 KIF27Q86VH2 1401 aa8.8□□□□□ -1
CHMP4A-210ENST00000552620 MAP3K7O43318 606 aa8.8□□□□□ -1
CHMP4A-210ENST00000552620 HOXB3P14651 431 aaPredicted RBP8.8□□□□□ -1
CHMP4A-210ENST00000552620 PRIM1P49642 420 aaKnown RBP8.8□□□□□ -1
CHMP4A-210ENST00000552620 DOK7Q18PE1 504 aa8.8□□□□□ -1
CHMP4A-210ENST00000552620 PCDHGA4Q9Y5G9 962 aa8.8□□□□□ -1
CHMP4A-210ENST00000552620 FECHP22830 423 aa8.79□□□□□ -1
CHMP4A-210ENST00000552620 TTLL12Q14166 644 aaPredicted RBP8.79□□□□□ -1
CHMP4A-210ENST00000552620 CFTRP13569 1480 aa8.78□□□□□ -1
CHMP4A-210ENST00000552620 NEUROD1Q13562 356 aa8.78□□□□□ -1
CHMP4A-210ENST00000552620 TYW1BQ6NUM6 668 aa8.78□□□□□ -1
CHMP4A-210ENST00000552620 PARP9Q8IXQ6 854 aa8.78□□□□□ -1
CHMP4A-210ENST00000552620 FBXW7Q969H0 707 aa8.78□□□□□ -1
CHMP4A-210ENST00000552620 ZNF710Q8N1W2 664 aa8.77□□□□□ -1.01
CHMP4A-210ENST00000552620 FAM117AQ9C073 453 aa8.77□□□□□ -1.01
CHMP4A-210ENST00000552620 RBM33Q96EV2 1170 aaKnown RBP8.76□□□□□ -1.01
CHMP4A-210ENST00000552620 JPH4Q96JJ6 628 aa8.76□□□□□ -1.01
CHMP4A-210ENST00000552620 PCDHGA10Q9Y5H3 936 aa8.76□□□□□ -1.01
CHMP4A-210ENST00000552620 CUX1P39880 1505 aa8.75□□□□□ -1.01
CHMP4A-210ENST00000552620 RIMBP2O15034 1052 aa8.75□□□□□ -1.01
CHMP4A-210ENST00000552620 CDHR5Q9HBB8 845 aa8.75□□□□□ -1.01
CHMP4A-210ENST00000552620 MARVELD3Q96A59 401 aa8.74□□□□□ -1.01
CHMP4A-210ENST00000552620 ARAP1Q96P48 1450 aa8.74□□□□□ -1.01
CHMP4A-210ENST00000552620 CERKQ8TCT0 537 aa8.73□□□□□ -1.01
CHMP4A-210ENST00000552620 NPDC1Q9NQX5 325 aaPredicted RBP8.73□□□□□ -1.01
CHMP4A-210ENST00000552620 PCDH10Q9P2E7 1040 aa8.73□□□□□ -1.01
CHMP4A-210ENST00000552620 HOXB1P14653 301 aaPredicted RBP8.72□□□□□ -1.01
CHMP4A-210ENST00000552620 EMP3P54852 163 aa8.72□□□□□ -1.01
CHMP4A-210ENST00000552620 ZSWIM6Q9HCJ5 1215 aa8.72□□□□□ -1.01
CHMP4A-210ENST00000552620 RRBP1Q9P2E9 1410 aaKnown RBP8.71□□□□□ -1.01
CHMP4A-210ENST00000552620 CLCN1P35523 988 aa8.71□□□□□ -1.02
CHMP4A-210ENST00000552620 TSR1Q2NL82 804 aaKnown RBP8.71□□□□□ -1.02
CHMP4A-210ENST00000552620 GIGYF2Q6Y7W6 1299 aaKnown RBP8.71□□□□□ -1.02
CHMP4A-210ENST00000552620 PLEKHG3A1L390 1219 aa8.7□□□□□ -1.02
CHMP4A-210ENST00000552620 RANGAP1P46060 587 aaPredicted RBP8.7□□□□□ -1.02
CHMP4A-210ENST00000552620 FOSBP53539 338 aa8.7□□□□□ -1.02
CHMP4A-210ENST00000552620 MAP3K1Q13233 1512 aa8.7□□□□□ -1.02
CHMP4A-210ENST00000552620 KDM4FA0A1W2PPD8 638 aa8.69□□□□□ -1.02
CHMP4A-210ENST00000552620 ZNF454Q8N9F8 522 aa8.69□□□□□ -1.02
CHMP4A-210ENST00000552620 ZDHHC16Q969W1 377 aa8.69□□□□□ -1.02
CHMP4A-210ENST00000552620 GOPCQ9HD26 462 aa8.69□□□□□ -1.02
CHMP4A-210ENST00000552620 GPCPD1Q9NPB8 672 aa8.69□□□□□ -1.02
CHMP4A-210ENST00000552620 IGF1RP08069 1367 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 157.8 ms