RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 EIF2AK4Q9P2K8 1649 aaKnown RBP32.22■■■□□ 2.75
NEK3-202ENST00000550841 ESF1Q9H501 851 aaKnown RBP32.22■■■□□ 2.75
NEK3-202ENST00000550841 TRIM26Q12899 539 aaPredicted RBP32.19■■■□□ 2.74
NEK3-202ENST00000550841 RIMS1Q86UR5 1692 aaKnown RBP32.18■■■□□ 2.74
NEK3-202ENST00000550841 HFM1A2PYH4 1435 aa32.17■■■□□ 2.74
NEK3-202ENST00000550841 NAIPQ13075 1403 aa32.16■■■□□ 2.74
NEK3-202ENST00000550841 LMTK3Q96Q04 1460 aa32.11■■■□□ 2.73
NEK3-202ENST00000550841 WASHC2CQ9Y4E1 1318 aa32.1■■■□□ 2.73
NEK3-202ENST00000550841 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.1■■■□□ 2.73
NEK3-202ENST00000550841 RNF17Q9BXT8 1623 aaKnown RBP32.1■■■□□ 2.73
NEK3-202ENST00000550841 CNTLNQ9NXG0 1405 aa32.09■■■□□ 2.73
NEK3-202ENST00000550841 KANK1Q14678 1352 aa32.09■■■□□ 2.73
NEK3-202ENST00000550841 GCC2Q8IWJ2 1684 aa32.08■■■□□ 2.73
NEK3-202ENST00000550841 ACIN1Q9UKV3 1341 aaKnown RBP32.07■■■□□ 2.72
NEK3-202ENST00000550841 FAM135AQ9P2D6 1515 aa32.06■■■□□ 2.72
NEK3-202ENST00000550841 HSPA2P54652 639 aa32.06■■■□□ 2.72
NEK3-202ENST00000550841 FBXO41Q8TF61 875 aa32.06■■■□□ 2.72
NEK3-202ENST00000550841 FER1L4A9Z1Z3 1794 aa32.06■■■□□ 2.72
NEK3-202ENST00000550841 SETD5Q9C0A6 1442 aa32.03■■■□□ 2.72
NEK3-202ENST00000550841 DEPDC5O75140 1603 aa32.02■■■□□ 2.72
NEK3-202ENST00000550841 PRDM15P57071 1507 aaPredicted RBP32■■■□□ 2.71
NEK3-202ENST00000550841 KDM5DQ9BY66 1539 aa32■■■□□ 2.71
NEK3-202ENST00000550841 MROH1Q8NDA8 1641 aa31.98■■■□□ 2.71
NEK3-202ENST00000550841 ZMYM3Q14202 1370 aa31.97■■■□□ 2.71
NEK3-202ENST00000550841 NUP155O75694 1391 aa31.96■■■□□ 2.71
NEK3-202ENST00000550841 TRIM52Q96A61 297 aa31.95■■■□□ 2.71
NEK3-202ENST00000550841 CLTCQ00610 1675 aaKnown RBP31.95■■■□□ 2.7
NEK3-202ENST00000550841 UNC13BO14795 1591 aa31.94■■■□□ 2.7
NEK3-202ENST00000550841 HRCP23327 699 aa31.94■■■□□ 2.7
NEK3-202ENST00000550841 ZC3H13Q5T200 1668 aaKnown RBP31.94■■■□□ 2.7
NEK3-202ENST00000550841 MROH2AA6NES4 1674 aa31.93■■■□□ 2.7
NEK3-202ENST00000550841 CEBPAP49715 358 aaPredicted RBP31.93■■■□□ 2.7
NEK3-202ENST00000550841 ABCC3O15438 1527 aa31.93■■■□□ 2.7
NEK3-202ENST00000550841 VWDEQ8N2E2 1590 aa31.91■■■□□ 2.7
NEK3-202ENST00000550841 RAB3GAP2Q9H2M9 1393 aa31.89■■■□□ 2.7
NEK3-202ENST00000550841 LMTK2Q8IWU2 1503 aa31.89■■■□□ 2.7
NEK3-202ENST00000550841 CEP152O94986 1710 aa31.86■■■□□ 2.69
NEK3-202ENST00000550841 ARHGAP31Q2M1Z3 1444 aa31.83■■■□□ 2.69
NEK3-202ENST00000550841 IQGAP3Q86VI3 1631 aa31.83■■■□□ 2.69
NEK3-202ENST00000550841 C3P01024 1663 aa31.83■■■□□ 2.69
NEK3-202ENST00000550841 PZPP20742 1482 aa31.8■■■□□ 2.68
NEK3-202ENST00000550841 CAMSAP1Q5T5Y3 1602 aa31.8■■■□□ 2.68
NEK3-202ENST00000550841 NPATQ14207 1427 aa31.78■■■□□ 2.68
NEK3-202ENST00000550841 SLC4A1APQ9BWU0 796 aaKnown RBP31.78■■■□□ 2.68
NEK3-202ENST00000550841 TET3O43151 1660 aa31.77■■■□□ 2.68
NEK3-202ENST00000550841 SETD1BQ9UPS6 1966 aaKnown RBP31.77■■■□□ 2.68
NEK3-202ENST00000550841 FBXO31Q5XUX0 539 aaPredicted RBP31.75■■■□□ 2.67
NEK3-202ENST00000550841 EFCAB6Q5THR3 1501 aa31.75■■■□□ 2.67
NEK3-202ENST00000550841 RPRD2Q5VT52 1461 aaKnown RBP31.74■■■□□ 2.67
NEK3-202ENST00000550841 PCGF6Q9BYE7 350 aa31.74■■■□□ 2.67
NEK3-202ENST00000550841 UHRF1BP1Q6BDS2 1440 aa31.74■■■□□ 2.67
NEK3-202ENST00000550841 PREX1Q8TCU6 1659 aa31.73■■■□□ 2.67
NEK3-202ENST00000550841 MPHOSPH9Q99550 1183 aa31.73■■■□□ 2.67
NEK3-202ENST00000550841 DMRT2Q9Y5R5 561 aa31.73■■■□□ 2.67
NEK3-202ENST00000550841 CERKQ8TCT0 537 aa31.72■■■□□ 2.67
NEK3-202ENST00000550841 CFAP65Q6ZU64 1925 aaKnown RBP31.69■■■□□ 2.66
NEK3-202ENST00000550841 PKD2Q13563 968 aa31.69■■■□□ 2.66
NEK3-202ENST00000550841 TNRQ92752 1358 aa31.68■■■□□ 2.66
NEK3-202ENST00000550841 ERVK-7P63135 1459 aa31.66■■■□□ 2.66
NEK3-202ENST00000550841 SPATA31D1Q6ZQQ2 1576 aa31.64■■■□□ 2.66
NEK3-202ENST00000550841 E9PCH4 1651 aa31.64■■■□□ 2.65
NEK3-202ENST00000550841 NOS1P29475 1434 aa31.61■■■□□ 2.65
NEK3-202ENST00000550841 SLC52A1Q9NWF4 448 aa31.6■■■□□ 2.65
NEK3-202ENST00000550841 NLRP1Q9C000 1473 aa31.57■■■□□ 2.64
NEK3-202ENST00000550841 PTPRTO14522 1441 aa31.54■■■□□ 2.64
NEK3-202ENST00000550841 IDI1Q13907 227 aa31.51■■■□□ 2.63
NEK3-202ENST00000550841 FOXD1Q16676 465 aa31.51■■■□□ 2.63
NEK3-202ENST00000550841 STRCQ7RTU9 1775 aa31.51■■■□□ 2.63
NEK3-202ENST00000550841 A2ML1A8K2U0 1454 aa31.5■■■□□ 2.63
NEK3-202ENST00000550841 MYO3AQ8NEV4 1616 aa31.49■■■□□ 2.63
NEK3-202ENST00000550841 STAG3Q9UJ98 1225 aa31.48■■■□□ 2.63
NEK3-202ENST00000550841 SPHKAPQ2M3C7 1700 aa31.48■■■□□ 2.63
NEK3-202ENST00000550841 SYNMO15061 1565 aa31.47■■■□□ 2.63
NEK3-202ENST00000550841 THEMISQ8N1K5 641 aaPredicted RBP31.46■■■□□ 2.63
NEK3-202ENST00000550841 CEP170BQ9Y4F5 1589 aaPredicted RBP31.44■■■□□ 2.62
NEK3-202ENST00000550841 TRPM2O94759 1503 aa31.43■■■□□ 2.62
NEK3-202ENST00000550841 PLA2R1Q13018 1463 aa31.42■■■□□ 2.62
NEK3-202ENST00000550841 ZNF142P52746 1687 aaPredicted RBP31.41■■■□□ 2.62
NEK3-202ENST00000550841 UGGT1Q9NYU2 1555 aa31.4■■■□□ 2.62
NEK3-202ENST00000550841 PIK3C2BO00750 1634 aa31.38■■■□□ 2.61
NEK3-202ENST00000550841 CHGAP10645 457 aaKnown RBP31.38■■■□□ 2.61
NEK3-202ENST00000550841 ANKRD30BQ9BXX2 1392 aa31.37■■■□□ 2.61
NEK3-202ENST00000550841 CCDC144AA2RUR9 1427 aa31.37■■■□□ 2.61
NEK3-202ENST00000550841 DHX57Q6P158 1386 aaKnown RBP31.35■■■□□ 2.61
NEK3-202ENST00000550841 KDM5AP29375 1690 aaKnown RBP31.34■■■□□ 2.61
NEK3-202ENST00000550841 HDGFP51858 240 aaKnown RBP31.31■■■□□ 2.6
NEK3-202ENST00000550841 UBR1Q8IWV7 1749 aa31.31■■■□□ 2.6
NEK3-202ENST00000550841 CLTCL1P53675 1640 aa31.31■■■□□ 2.6
NEK3-202ENST00000550841 NCKAP5LQ9HCH0 1330 aa31.3■■■□□ 2.6
NEK3-202ENST00000550841 ADGRB3O60242 1522 aa31.3■■■□□ 2.6
NEK3-202ENST00000550841 ANKLE2Q86XL3 938 aa31.28■■■□□ 2.6
NEK3-202ENST00000550841 KIF1BO60333 1816 aa31.27■■■□□ 2.6
NEK3-202ENST00000550841 EID1Q9Y6B2 187 aa31.27■■■□□ 2.6
NEK3-202ENST00000550841 TMEM131LA2VDJ0 1609 aa31.27■■■□□ 2.6
NEK3-202ENST00000550841 ZNF326Q5BKZ1 582 aaKnown RBP31.25■■■□□ 2.59
NEK3-202ENST00000550841 TMEM2Q9UHN6 1383 aa31.25■■■□□ 2.59
NEK3-202ENST00000550841 TXNDC2Q86VQ3 553 aa31.22■■■□□ 2.59
NEK3-202ENST00000550841 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.22■■■□□ 2.59
NEK3-202ENST00000550841 SLIT1O75093 1534 aa31.21■■■□□ 2.59
NEK3-202ENST00000550841 LTBP4Q8N2S1 1624 aa31.2■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms