RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 ZNF518AQ6AHZ1 1483 aa11.5□□□□□ -0.57
DEPDC4-208ENST00000549341 EFCAB2Q5VUJ9 269 aa11.49□□□□□ -0.57
DEPDC4-208ENST00000549341 PHF12Q96QT6 1004 aa11.49□□□□□ -0.57
DEPDC4-208ENST00000549341 ATP1B4Q9UN42 357 aaPredicted RBP11.49□□□□□ -0.57
DEPDC4-208ENST00000549341 ZNF335Q9H4Z2 1342 aaPredicted RBP11.49□□□□□ -0.57
DEPDC4-208ENST00000549341 AFAP1Q8N556 730 aa11.48□□□□□ -0.57
DEPDC4-208ENST00000549341 ARHGAP5Q13017 1502 aa11.47□□□□□ -0.57
DEPDC4-208ENST00000549341 TRAPPC8Q9Y2L5 1435 aa11.47□□□□□ -0.57
DEPDC4-208ENST00000549341 DIP2CQ9Y2E4 1556 aa11.46□□□□□ -0.57
DEPDC4-208ENST00000549341 NCKAP5LQ9HCH0 1330 aa11.45□□□□□ -0.58
DEPDC4-208ENST00000549341 KDM5CP41229 1560 aa11.45□□□□□ -0.58
DEPDC4-208ENST00000549341 POTEB2H3BUK9 544 aa11.44□□□□□ -0.58
DEPDC4-208ENST00000549341 CAMSAP1Q5T5Y3 1602 aa11.44□□□□□ -0.58
DEPDC4-208ENST00000549341 ABCA6Q8N139 1617 aa11.43□□□□□ -0.58
DEPDC4-208ENST00000549341 MED1Q15648 1581 aaPredicted RBP11.43□□□□□ -0.58
DEPDC4-208ENST00000549341 PIP4K2BP78356 416 aa11.43□□□□□ -0.58
DEPDC4-208ENST00000549341 C3P01024 1663 aa11.43□□□□□ -0.58
DEPDC4-208ENST00000549341 CNTLNQ9NXG0 1405 aa11.42□□□□□ -0.58
DEPDC4-208ENST00000549341 KIF14Q15058 1648 aa11.42□□□□□ -0.58
DEPDC4-208ENST00000549341 HSPA1LP34931 641 aa11.41□□□□□ -0.58
DEPDC4-208ENST00000549341 MNX1P50219 401 aaPredicted RBP11.41□□□□□ -0.58
DEPDC4-208ENST00000549341 REREQ9P2R6 1566 aa11.41□□□□□ -0.58
DEPDC4-208ENST00000549341 EHMT2Q96KQ7 1210 aa11.4□□□□□ -0.58
DEPDC4-208ENST00000549341 MYO5CQ9NQX4 1742 aa11.4□□□□□ -0.58
DEPDC4-208ENST00000549341 POTEMA6NI47 508 aa11.39□□□□□ -0.59
DEPDC4-208ENST00000549341 CLIP1P30622 1438 aa11.39□□□□□ -0.59
DEPDC4-208ENST00000549341 CDK11AQ9UQ88 783 aaPredicted RBP11.39□□□□□ -0.59
DEPDC4-208ENST00000549341 AGLP35573 1532 aa11.39□□□□□ -0.59
DEPDC4-208ENST00000549341 MLH3Q9UHC1 1453 aa11.38□□□□□ -0.59
DEPDC4-208ENST00000549341 TROQ12816 1431 aaPredicted RBP11.38□□□□□ -0.59
DEPDC4-208ENST00000549341 NPATQ14207 1427 aa11.38□□□□□ -0.59
DEPDC4-208ENST00000549341 C7P10643 843 aa11.38□□□□□ -0.59
DEPDC4-208ENST00000549341 ASTLQ6HA08 431 aaPredicted RBP11.38□□□□□ -0.59
DEPDC4-208ENST00000549341 PELP1Q8IZL8 1130 aaKnown RBP11.38□□□□□ -0.59
DEPDC4-208ENST00000549341 SLC39A7Q92504 469 aa11.38□□□□□ -0.59
DEPDC4-208ENST00000549341 MAMSTRQ6ZN01 415 aa11.36□□□□□ -0.59
DEPDC4-208ENST00000549341 PCDH10Q9P2E7 1040 aa11.36□□□□□ -0.59
DEPDC4-208ENST00000549341 EEA1Q15075 1411 aa11.35□□□□□ -0.59
DEPDC4-208ENST00000549341 FMN1Q68DA7 1419 aa11.35□□□□□ -0.59
DEPDC4-208ENST00000549341 ABCC1P33527 1531 aa11.35□□□□□ -0.59
DEPDC4-208ENST00000549341 PKD2Q13563 968 aa11.35□□□□□ -0.59
DEPDC4-208ENST00000549341 POTEGQ6S5H5 508 aa11.35□□□□□ -0.59
DEPDC4-208ENST00000549341 METRNQ9UJH8 293 aa11.35□□□□□ -0.59
DEPDC4-208ENST00000549341 ZMYM3Q14202 1370 aa11.35□□□□□ -0.59
DEPDC4-208ENST00000549341 PLA2R1Q13018 1463 aa11.35□□□□□ -0.59
DEPDC4-208ENST00000549341 TCOF1Q13428 1488 aaKnown RBP11.34□□□□□ -0.59
DEPDC4-208ENST00000549341 MYO3AQ8NEV4 1616 aa11.34□□□□□ -0.59
DEPDC4-208ENST00000549341 SETD1BQ9UPS6 1966 aaKnown RBP11.34□□□□□ -0.59
DEPDC4-208ENST00000549341 CEP170BQ9Y4F5 1589 aaPredicted RBP11.33□□□□□ -0.6
DEPDC4-208ENST00000549341 ATMINO43313 823 aaPredicted RBP11.33□□□□□ -0.6
DEPDC4-208ENST00000549341 MS4A3Q96HJ5 214 aa11.33□□□□□ -0.6
DEPDC4-208ENST00000549341 TOM1O60784 492 aa11.32□□□□□ -0.6
DEPDC4-208ENST00000549341 ZNF777Q9ULD5 760 aaPredicted RBP11.31□□□□□ -0.6
DEPDC4-208ENST00000549341 PTPRKQ15262 1439 aa11.3□□□□□ -0.6
DEPDC4-208ENST00000549341 SPAG9O60271 1321 aaKnown RBP11.3□□□□□ -0.6
DEPDC4-208ENST00000549341 PREX2Q70Z35 1606 aa11.29□□□□□ -0.6
DEPDC4-208ENST00000549341 UBTFP17480 764 aaKnown RBP11.29□□□□□ -0.6
DEPDC4-208ENST00000549341 GGT6Q6P531 493 aa11.29□□□□□ -0.6
DEPDC4-208ENST00000549341 ARHGAP35Q9NRY4 1499 aa11.29□□□□□ -0.6
DEPDC4-208ENST00000549341 ZNF142P52746 1687 aaPredicted RBP11.29□□□□□ -0.6
DEPDC4-208ENST00000549341 ITSN2Q9NZM3 1697 aa11.29□□□□□ -0.6
DEPDC4-208ENST00000549341 MROH2AA6NES4 1674 aa11.28□□□□□ -0.6
DEPDC4-208ENST00000549341 CPS1P31327 1500 aa11.28□□□□□ -0.6
DEPDC4-208ENST00000549341 SYCP2Q9BX26 1530 aa11.28□□□□□ -0.6
DEPDC4-208ENST00000549341 KIDINS220Q9ULH0 1771 aa11.28□□□□□ -0.6
DEPDC4-208ENST00000549341 SAMD9LQ8IVG5 1584 aa11.28□□□□□ -0.6
DEPDC4-208ENST00000549341 CLTCQ00610 1675 aaKnown RBP11.27□□□□□ -0.61
DEPDC4-208ENST00000549341 SHANK2Q9UPX8 1470 aa11.26□□□□□ -0.61
DEPDC4-208ENST00000549341 A2ML1A8K2U0 1454 aa11.25□□□□□ -0.61
DEPDC4-208ENST00000549341 CDC42BPBQ9Y5S2 1711 aa11.25□□□□□ -0.61
DEPDC4-208ENST00000549341 A2MP01023 1474 aa11.25□□□□□ -0.61
DEPDC4-208ENST00000549341 ATP7AQ04656 1500 aa11.25□□□□□ -0.61
DEPDC4-208ENST00000549341 HNRNPMP52272 730 aaKnown RBP eCLIP11.24□□□□□ -0.61
DEPDC4-208ENST00000549341 TSPYL2Q9H2G4 693 aaPredicted RBP11.24□□□□□ -0.61
DEPDC4-208ENST00000549341 SCUBE2Q9NQ36 999 aa11.24□□□□□ -0.61
DEPDC4-208ENST00000549341 PLXNC1O60486 1568 aa11.24□□□□□ -0.61
DEPDC4-208ENST00000549341 SUPT6HQ7KZ85 1726 aaKnown RBP11.23□□□□□ -0.61
DEPDC4-208ENST00000549341 NEURL4Q96JN8 1562 aa11.23□□□□□ -0.61
DEPDC4-208ENST00000549341 CCDC18Q5T9S5 1454 aa11.22□□□□□ -0.61
DEPDC4-208ENST00000549341 TNRQ92752 1358 aa11.22□□□□□ -0.61
DEPDC4-208ENST00000549341 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.21□□□□□ -0.61
DEPDC4-208ENST00000549341 LOC105371045A0A1W2PR82 267 aa11.21□□□□□ -0.61
DEPDC4-208ENST00000549341 POTEJP0CG39 1038 aa11.21□□□□□ -0.61
DEPDC4-208ENST00000549341 CCDC61Q9Y6R9 512 aa11.21□□□□□ -0.61
DEPDC4-208ENST00000549341 DNMT1P26358 1616 aaKnown RBP11.2□□□□□ -0.62
DEPDC4-208ENST00000549341 FBXO31Q5XUX0 539 aaPredicted RBP11.2□□□□□ -0.62
DEPDC4-208ENST00000549341 ALKQ9UM73 1620 aa11.2□□□□□ -0.62
DEPDC4-208ENST00000549341 VWDEQ8N2E2 1590 aa11.2□□□□□ -0.62
DEPDC4-208ENST00000549341 INO80Q9ULG1 1556 aaPredicted RBP11.2□□□□□ -0.62
DEPDC4-208ENST00000549341 NPHP4O75161 1426 aaPredicted RBP11.19□□□□□ -0.62
DEPDC4-208ENST00000549341 PLEKHG5O94827 1062 aa11.19□□□□□ -0.62
DEPDC4-208ENST00000549341 ANKLE2Q86XL3 938 aa11.19□□□□□ -0.62
DEPDC4-208ENST00000549341 CASKIN1Q8WXD9 1431 aa11.18□□□□□ -0.62
DEPDC4-208ENST00000549341 ATN1P54259 1190 aaPredicted RBP11.18□□□□□ -0.62
DEPDC4-208ENST00000549341 PROM2Q8N271 834 aa11.18□□□□□ -0.62
DEPDC4-208ENST00000549341 KIF12Q96FN5 646 aa11.18□□□□□ -0.62
DEPDC4-208ENST00000549341 CFDP1Q9UEE9 299 aaPredicted RBP11.18□□□□□ -0.62
DEPDC4-208ENST00000549341 GPATCH8Q9UKJ3 1502 aaKnown RBP11.18□□□□□ -0.62
DEPDC4-208ENST00000549341 LRRIQ1Q96JM4 1722 aa11.18□□□□□ -0.62
DEPDC4-208ENST00000549341 RGS17Q9UGC6 210 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms