RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 CARD11Q9BXL7 1154 aa25.61■■□□□ 1.69
PRPF40B-208ENST00000548436 CCDC144AA2RUR9 1427 aa25.61■■□□□ 1.69
PRPF40B-208ENST00000548436 TRAPPC8Q9Y2L5 1435 aa25.6■■□□□ 1.69
PRPF40B-208ENST00000548436 FKBP8Q14318 412 aa25.6■■□□□ 1.69
PRPF40B-208ENST00000548436 MAGI2Q86UL8 1455 aa25.6■■□□□ 1.69
PRPF40B-208ENST00000548436 ERBINQ96RT1 1412 aa25.59■■□□□ 1.69
PRPF40B-208ENST00000548436 DHX29Q7Z478 1369 aaKnown RBP25.57■■□□□ 1.68
PRPF40B-208ENST00000548436 ARID4BQ4LE39 1312 aaPredicted RBP25.57■■□□□ 1.68
PRPF40B-208ENST00000548436 ARAP3Q8WWN8 1544 aa25.55■■□□□ 1.68
PRPF40B-208ENST00000548436 TRPM1Q7Z4N2 1603 aa25.55■■□□□ 1.68
PRPF40B-208ENST00000548436 POLR3GLQ9BT43 218 aa25.55■■□□□ 1.68
PRPF40B-208ENST00000548436 MRS2Q9HD23 443 aa25.54■■□□□ 1.68
PRPF40B-208ENST00000548436 PRAG1Q86YV5 1406 aa25.53■■□□□ 1.68
PRPF40B-208ENST00000548436 WDR7Q9Y4E6 1490 aa25.52■■□□□ 1.68
PRPF40B-208ENST00000548436 ST20-MTHFSA0A0A6YYL1 179 aa25.51■■□□□ 1.67
PRPF40B-208ENST00000548436 BCANQ96GW7 911 aa25.51■■□□□ 1.67
PRPF40B-208ENST00000548436 ROCK2O75116 1388 aaKnown RBP25.51■■□□□ 1.67
PRPF40B-208ENST00000548436 RGL3Q3MIN7 710 aa25.51■■□□□ 1.67
PRPF40B-208ENST00000548436 A2MP01023 1474 aa25.51■■□□□ 1.67
PRPF40B-208ENST00000548436 ATP10AO60312 1499 aa25.49■■□□□ 1.67
PRPF40B-208ENST00000548436 FAM9BQ8IZU0 186 aa25.49■■□□□ 1.67
PRPF40B-208ENST00000548436 NEFLP07196 543 aa25.48■■□□□ 1.67
PRPF40B-208ENST00000548436 AFAP1Q8N556 730 aa25.48■■□□□ 1.67
PRPF40B-208ENST00000548436 ZFYVE16Q7Z3T8 1539 aa25.48■■□□□ 1.67
PRPF40B-208ENST00000548436 SPAG9O60271 1321 aaKnown RBP25.47■■□□□ 1.67
PRPF40B-208ENST00000548436 ABCA9Q8IUA7 1624 aa25.47■■□□□ 1.67
PRPF40B-208ENST00000548436 RTEL1-TNFRSF6BF6WH68 1400 aa25.47■■□□□ 1.67
PRPF40B-208ENST00000548436 RIMBP3CA6NJZ7 1639 aa25.44■■□□□ 1.66
PRPF40B-208ENST00000548436 RIMBP3BA6NNM3 1639 aa25.44■■□□□ 1.66
PRPF40B-208ENST00000548436 RIMBP3Q9UFD9 1639 aa25.44■■□□□ 1.66
PRPF40B-208ENST00000548436 E9PCH4 1651 aa25.43■■□□□ 1.66
PRPF40B-208ENST00000548436 FANCAO15360 1455 aa25.42■■□□□ 1.66
PRPF40B-208ENST00000548436 NBPF1Q3BBV0 1214 aa25.42■■□□□ 1.66
PRPF40B-208ENST00000548436 CNGB1Q14028 1251 aaPredicted RBP25.4■■□□□ 1.66
PRPF40B-208ENST00000548436 LAMC1P11047 1609 aa25.4■■□□□ 1.66
PRPF40B-208ENST00000548436 GPRASP1Q5JY77 1395 aa25.39■■□□□ 1.66
PRPF40B-208ENST00000548436 INO80Q9ULG1 1556 aaPredicted RBP25.39■■□□□ 1.66
PRPF40B-208ENST00000548436 DEPDC5O75140 1603 aa25.39■■□□□ 1.66
PRPF40B-208ENST00000548436 ATP7AQ04656 1500 aa25.37■■□□□ 1.65
PRPF40B-208ENST00000548436 EIF2AK4Q9P2K8 1649 aaKnown RBP25.37■■□□□ 1.65
PRPF40B-208ENST00000548436 ASXL2Q76L83 1435 aa25.37■■□□□ 1.65
PRPF40B-208ENST00000548436 PRDM15P57071 1507 aaPredicted RBP25.36■■□□□ 1.65
PRPF40B-208ENST00000548436 ZBED9Q6R2W3 1325 aa25.35■■□□□ 1.65
PRPF40B-208ENST00000548436 DNAJC5Q9H3Z4 198 aa25.35■■□□□ 1.65
PRPF40B-208ENST00000548436 SPHKAPQ2M3C7 1700 aa25.33■■□□□ 1.65
PRPF40B-208ENST00000548436 ADGRL1O94910 1474 aa25.33■■□□□ 1.65
PRPF40B-208ENST00000548436 SCAPERQ9BY12 1400 aa25.32■■□□□ 1.64
PRPF40B-208ENST00000548436 TRPM2O94759 1503 aa25.31■■□□□ 1.64
PRPF40B-208ENST00000548436 CEP152O94986 1710 aa25.31■■□□□ 1.64
PRPF40B-208ENST00000548436 TET3O43151 1660 aa25.31■■□□□ 1.64
PRPF40B-208ENST00000548436 TSHZ2Q9NRE2 1034 aa25.3■■□□□ 1.64
PRPF40B-208ENST00000548436 RNF17Q9BXT8 1623 aaKnown RBP25.29■■□□□ 1.64
PRPF40B-208ENST00000548436 VWDEQ8N2E2 1590 aa25.28■■□□□ 1.64
PRPF40B-208ENST00000548436 PTPRTO14522 1441 aa25.28■■□□□ 1.64
PRPF40B-208ENST00000548436 CLTCL1P53675 1640 aa25.27■■□□□ 1.64
PRPF40B-208ENST00000548436 COL17A1Q9UMD9 1497 aaPredicted RBP25.26■■□□□ 1.63
PRPF40B-208ENST00000548436 TESK2Q96S53 571 aa25.25■■□□□ 1.63
PRPF40B-208ENST00000548436 MADDQ8WXG6 1647 aa25.25■■□□□ 1.63
PRPF40B-208ENST00000548436 KIDINS220Q9ULH0 1771 aa25.24■■□□□ 1.63
PRPF40B-208ENST00000548436 MROH1Q8NDA8 1641 aa25.23■■□□□ 1.63
PRPF40B-208ENST00000548436 KIF3BO15066 747 aa25.23■■□□□ 1.63
PRPF40B-208ENST00000548436 MYT1LQ9UL68 1186 aa25.23■■□□□ 1.63
PRPF40B-208ENST00000548436 DISP3Q9P2K9 1392 aa25.23■■□□□ 1.63
PRPF40B-208ENST00000548436 IRX6P78412 446 aaPredicted RBP25.22■■□□□ 1.63
PRPF40B-208ENST00000548436 PNISRQ8TF01 805 aaKnown RBP25.22■■□□□ 1.63
PRPF40B-208ENST00000548436 KANK1Q14678 1352 aa25.22■■□□□ 1.63
PRPF40B-208ENST00000548436 KTN1Q86UP2 1357 aaKnown RBP25.22■■□□□ 1.63
PRPF40B-208ENST00000548436 CYB5RLQ6IPT4 315 aa25.22■■□□□ 1.63
PRPF40B-208ENST00000548436 RALBP1Q15311 655 aa25.21■■□□□ 1.63
PRPF40B-208ENST00000548436 TMC1Q8TDI8 760 aa25.21■■□□□ 1.63
PRPF40B-208ENST00000548436 MYBBP1AQ9BQG0 1328 aaKnown RBP25.19■■□□□ 1.62
PRPF40B-208ENST00000548436 IQGAP1P46940 1657 aa25.18■■□□□ 1.62
PRPF40B-208ENST00000548436 PER1O15534 1290 aaPredicted RBP25.17■■□□□ 1.62
PRPF40B-208ENST00000548436 NPM1P06748 294 aaKnown RBP eCLIP25.17■■□□□ 1.62
PRPF40B-208ENST00000548436 BRD4O60885 1362 aaPredicted RBP25.17■■□□□ 1.62
PRPF40B-208ENST00000548436 ZNF518AQ6AHZ1 1483 aa25.14■■□□□ 1.62
PRPF40B-208ENST00000548436 PARD3Q8TEW0 1356 aa25.14■■□□□ 1.61
PRPF40B-208ENST00000548436 LRPPRCP42704 1394 aaKnown RBP25.13■■□□□ 1.61
PRPF40B-208ENST00000548436 TMF1P82094 1093 aa25.13■■□□□ 1.61
PRPF40B-208ENST00000548436 SMG6Q86US8 1419 aaKnown RBP25.11■■□□□ 1.61
PRPF40B-208ENST00000548436 STAC3Q96MF2 364 aa25.11■■□□□ 1.61
PRPF40B-208ENST00000548436 CFAP74Q9C0B2 1584 aa25.1■■□□□ 1.61
PRPF40B-208ENST00000548436 CD109Q6YHK3 1445 aa25.1■■□□□ 1.61
PRPF40B-208ENST00000548436 EFCAB6Q5THR3 1501 aa25.1■■□□□ 1.61
PRPF40B-208ENST00000548436 NEURL4Q96JN8 1562 aa25.1■■□□□ 1.61
PRPF40B-208ENST00000548436 UGGT1Q9NYU2 1555 aa25.1■■□□□ 1.61
PRPF40B-208ENST00000548436 PPRC1Q5VV67 1664 aaKnown RBP25.09■■□□□ 1.61
PRPF40B-208ENST00000548436 ERICH6BQ5W0A0 696 aa25.09■■□□□ 1.61
PRPF40B-208ENST00000548436 KIF1BO60333 1816 aa25.09■■□□□ 1.61
PRPF40B-208ENST00000548436 PANK3Q9H999 370 aa25.08■■□□□ 1.61
PRPF40B-208ENST00000548436 SENP3-EIF4A1A0A087X0R7 540 aa25.07■■□□□ 1.6
PRPF40B-208ENST00000548436 KIAA1210Q9ULL0 1709 aa25.07■■□□□ 1.6
PRPF40B-208ENST00000548436 POGZQ7Z3K3 1410 aa25.06■■□□□ 1.6
PRPF40B-208ENST00000548436 NLRP13Q86W25 1043 aa25.06■■□□□ 1.6
PRPF40B-208ENST00000548436 SCAF11Q99590 1463 aaKnown RBP25.05■■□□□ 1.6
PRPF40B-208ENST00000548436 WASHC2CQ9Y4E1 1318 aa25.05■■□□□ 1.6
PRPF40B-208ENST00000548436 NUDCQ9Y266 331 aa25.05■■□□□ 1.6
PRPF40B-208ENST00000548436 LMTK2Q8IWU2 1503 aa25.04■■□□□ 1.6
PRPF40B-208ENST00000548436 IFT172Q9UG01 1749 aa25.03■■□□□ 1.6
PRPF40B-208ENST00000548436 MROH2AA6NES4 1674 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms