RNA–Protein interactions for RNA: ENST00000545308.5

SNHG1-222, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 646 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-222	ENST00000545308	DPYSL4	O14531	572 aa		9.39	□□□□□ -0.91
SNHG1-222	ENST00000545308	HAP1	P54257	671 aa	Predicted RBP	9.39	□□□□□ -0.91
SNHG1-222	ENST00000545308	NBPF3	Q9H094	633 aa		9.39	□□□□□ -0.91
SNHG1-222	ENST00000545308	COL9A1	P20849	921 aa		9.38	□□□□□ -0.91
SNHG1-222	ENST00000545308	WNT2B	Q93097	391 aa		9.38	□□□□□ -0.91
SNHG1-222	ENST00000545308	RABGEF1	Q9UJ41	708 aa		9.37	□□□□□ -0.91
SNHG1-222	ENST00000545308	PROX2	Q3B8N5	592 aa		9.36	□□□□□ -0.91
SNHG1-222	ENST00000545308	EPAS1	Q99814	870 aa		9.36	□□□□□ -0.91
SNHG1-222	ENST00000545308	C6orf132	Q5T0Z8	1188 aa		9.34	□□□□□ -0.91
SNHG1-222	ENST00000545308	SPRYD3	Q8NCJ5	442 aa		9.34	□□□□□ -0.91
SNHG1-222	ENST00000545308	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	9.32	□□□□□ -0.92
SNHG1-222	ENST00000545308	ONECUT3	O60422	494 aa	Predicted RBP	9.31	□□□□□ -0.92
SNHG1-222	ENST00000545308	IFFO2	Q5TF58	517 aa		9.31	□□□□□ -0.92
SNHG1-222	ENST00000545308	LAPTM4B	Q86VI4	370 aa		9.3	□□□□□ -0.92
SNHG1-222	ENST00000545308	DDX12P	Q92771	950 aa		9.3	□□□□□ -0.92
SNHG1-222	ENST00000545308	KIAA1468	Q9P260	1216 aa		9.3	□□□□□ -0.92
SNHG1-222	ENST00000545308	ANKK1	Q8NFD2	765 aa		9.29	□□□□□ -0.92
SNHG1-222	ENST00000545308	RBM33	Q96EV2	1170 aa	Known RBP	9.29	□□□□□ -0.92
SNHG1-222	ENST00000545308	PDIA6	Q15084	440 aa		9.28	□□□□□ -0.92
SNHG1-222	ENST00000545308	TRIM6-TRIM34	B2RNG4	842 aa		9.27	□□□□□ -0.93
SNHG1-222	ENST00000545308	SPDYE16	A6NNV3	312 aa	Predicted RBP	9.26	□□□□□ -0.93
SNHG1-222	ENST00000545308	ZFR	Q96KR1	1074 aa	Known RBP	9.26	□□□□□ -0.93
SNHG1-222	ENST00000545308	SOWAHB	A6NEL2	793 aa		9.25	□□□□□ -0.93
SNHG1-222	ENST00000545308	BCAM	P50895	628 aa		9.25	□□□□□ -0.93
SNHG1-222	ENST00000545308	EN1	Q05925	392 aa	Predicted RBP	9.25	□□□□□ -0.93
SNHG1-222	ENST00000545308	NBR1	Q14596	966 aa		9.25	□□□□□ -0.93
SNHG1-222	ENST00000545308	E2F4	Q16254	413 aa		9.25	□□□□□ -0.93
SNHG1-222	ENST00000545308	VSIG10	Q8N0Z9	540 aa		9.25	□□□□□ -0.93
SNHG1-222	ENST00000545308	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	9.24	□□□□□ -0.93
SNHG1-222	ENST00000545308	SEPT9	Q9UHD8	586 aa	Predicted RBP	9.24	□□□□□ -0.93
SNHG1-222	ENST00000545308	CFAP44	Q96MT7	982 aa		9.23	□□□□□ -0.93
SNHG1-222	ENST00000545308	ARIH1	Q9Y4X5	557 aa	Predicted RBP	9.23	□□□□□ -0.93
SNHG1-222	ENST00000545308		A0A0G2JS52	829 aa		9.22	□□□□□ -0.93
SNHG1-222	ENST00000545308	MAP3K7	O43318	606 aa		9.22	□□□□□ -0.93
SNHG1-222	ENST00000545308	RGS20	O76081	388 aa		9.22	□□□□□ -0.93
SNHG1-222	ENST00000545308	TSR1	Q2NL82	804 aa	Known RBP	9.22	□□□□□ -0.93
SNHG1-222	ENST00000545308	FAM98C	Q17RN3	349 aa	Known RBP	9.21	□□□□□ -0.94
SNHG1-222	ENST00000545308	NYAP1	Q6ZVC0	841 aa		9.21	□□□□□ -0.94
SNHG1-222	ENST00000545308	WDR70	Q9NW82	654 aa		9.21	□□□□□ -0.94
SNHG1-222	ENST00000545308	BCAN	Q96GW7	911 aa		9.2	□□□□□ -0.94
SNHG1-222	ENST00000545308	KDM2A	Q9Y2K7	1162 aa		9.2	□□□□□ -0.94
SNHG1-222	ENST00000545308	ITGBL1	O95965	494 aa	Predicted RBP	9.19	□□□□□ -0.94
SNHG1-222	ENST00000545308	PACS2	Q86VP3	889 aa		9.19	□□□□□ -0.94
SNHG1-222	ENST00000545308	TSKS	Q9UJT2	592 aa		9.19	□□□□□ -0.94
SNHG1-222	ENST00000545308	WBP1L	Q9NX94	342 aa		9.18	□□□□□ -0.94
SNHG1-222	ENST00000545308	PRIM1	P49642	420 aa	Known RBP	9.17	□□□□□ -0.94
SNHG1-222	ENST00000545308	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	9.17	□□□□□ -0.94
SNHG1-222	ENST00000545308	GRXCR2	A6NFK2	248 aa		9.16	□□□□□ -0.94
SNHG1-222	ENST00000545308	LRCH3	Q96II8	777 aa		9.16	□□□□□ -0.94
SNHG1-222	ENST00000545308	PRSS12	P56730	875 aa		9.15	□□□□□ -0.94
SNHG1-222	ENST00000545308	CERK	Q8TCT0	537 aa		9.15	□□□□□ -0.94
SNHG1-222	ENST00000545308	CDCA7L	Q96GN5	454 aa		9.15	□□□□□ -0.94
SNHG1-222	ENST00000545308	TSR3	Q9UJK0	312 aa	Known RBP	9.15	□□□□□ -0.94
SNHG1-222	ENST00000545308	PRKCSH	P14314	528 aa	Predicted RBP	9.14	□□□□□ -0.95
SNHG1-222	ENST00000545308	FAM198A	Q9UFP1	575 aa		9.13	□□□□□ -0.95
SNHG1-222	ENST00000545308	HPS5	Q9UPZ3	1129 aa		9.13	□□□□□ -0.95
SNHG1-222	ENST00000545308	OSBP	P22059	807 aa		9.12	□□□□□ -0.95
SNHG1-222	ENST00000545308	KCNC4	Q03721	635 aa		9.11	□□□□□ -0.95
SNHG1-222	ENST00000545308	SMAP	O00193	183 aa		9.1	□□□□□ -0.95
SNHG1-222	ENST00000545308	C3orf80	F5H4A9	247 aa		9.09	□□□□□ -0.95
SNHG1-222	ENST00000545308	TATDN2	Q93075	761 aa		9.09	□□□□□ -0.95
SNHG1-222	ENST00000545308	IRX2	Q9BZI1	471 aa	Predicted RBP	9.09	□□□□□ -0.95
SNHG1-222	ENST00000545308	CDHR5	Q9HBB8	845 aa		9.09	□□□□□ -0.95
SNHG1-222	ENST00000545308	TSHZ2	Q9NRE2	1034 aa		9.09	□□□□□ -0.95
SNHG1-222	ENST00000545308	NBPF26	B4DH59	902 aa		9.08	□□□□□ -0.96
SNHG1-222	ENST00000545308	PPP4C	P60510	307 aa		9.08	□□□□□ -0.96
SNHG1-222	ENST00000545308	SAMD7	Q7Z3H4	446 aa		9.08	□□□□□ -0.96
SNHG1-222	ENST00000545308	PNMA3	Q9UL41	463 aa		9.08	□□□□□ -0.96
SNHG1-222	ENST00000545308	RBM27	Q9P2N5	1060 aa	Known RBP	9.07	□□□□□ -0.96
SNHG1-222	ENST00000545308	NUDT18	Q6ZVK8	323 aa		9.04	□□□□□ -0.96
SNHG1-222	ENST00000545308	NPDC1	Q9NQX5	325 aa	Predicted RBP	9.04	□□□□□ -0.96
SNHG1-222	ENST00000545308	TTC13	Q8NBP0	860 aa		9.03	□□□□□ -0.96
SNHG1-222	ENST00000545308	TJAP1	Q5JTD0	557 aa		9.02	□□□□□ -0.97
SNHG1-222	ENST00000545308	HDGF	P51858	240 aa	Known RBP	9.01	□□□□□ -0.97
SNHG1-222	ENST00000545308	ARHGEF1	Q92888	912 aa	Known RBP	9.01	□□□□□ -0.97
SNHG1-222	ENST00000545308	PADI6	Q6TGC4	694 aa		9	□□□□□ -0.97
SNHG1-222	ENST00000545308	MLLT3	P42568	568 aa	Predicted RBP	8.98	□□□□□ -0.97
SNHG1-222	ENST00000545308	TPRN	Q4KMQ1	711 aa		8.98	□□□□□ -0.97
SNHG1-222	ENST00000545308	KCNV2	Q8TDN2	545 aa		8.98	□□□□□ -0.97
SNHG1-222	ENST00000545308	MTR	Q99707	1265 aa		8.98	□□□□□ -0.97
SNHG1-222	ENST00000545308	IL21	Q9HBE4	155 aa		8.97	□□□□□ -0.97
SNHG1-222	ENST00000545308	RNF40	O75150	1001 aa		8.96	□□□□□ -0.98
SNHG1-222	ENST00000545308	APLP1	P51693	650 aa		8.95	□□□□□ -0.98
SNHG1-222	ENST00000545308	SWT1	Q5T5J6	900 aa	Known RBP	8.95	□□□□□ -0.98
SNHG1-222	ENST00000545308	NECTIN2	Q92692	538 aa		8.95	□□□□□ -0.98
SNHG1-222	ENST00000545308	EYA1	Q99502	592 aa		8.95	□□□□□ -0.98
SNHG1-222	ENST00000545308	SLF2	Q8IX21	1173 aa		8.93	□□□□□ -0.98
SNHG1-222	ENST00000545308	PTGDR	Q13258	359 aa		8.92	□□□□□ -0.98
SNHG1-222	ENST00000545308	ZNF516	Q92618	1163 aa		8.92	□□□□□ -0.98
SNHG1-222	ENST00000545308	PPP1R18	Q6NYC8	613 aa		8.91	□□□□□ -0.98
SNHG1-222	ENST00000545308	SLC4A3	P48751	1232 aa		8.9	□□□□□ -0.98
SNHG1-222	ENST00000545308		Q6ZNB5	142 aa		8.89	□□□□□ -0.99
SNHG1-222	ENST00000545308	LAPTM4A	Q15012	233 aa		8.88	□□□□□ -0.99
SNHG1-222	ENST00000545308	PRKD2	Q9BZL6	878 aa		8.88	□□□□□ -0.99
SNHG1-222	ENST00000545308	P3H3	Q8IVL6	736 aa		8.87	□□□□□ -0.99
SNHG1-222	ENST00000545308	NKX2-3	Q8TAU0	364 aa		8.87	□□□□□ -0.99
SNHG1-222	ENST00000545308	RBM46	Q8TBY0	533 aa	Known RBP	8.87	□□□□□ -0.99
SNHG1-222	ENST00000545308	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	8.87	□□□□□ -0.99
SNHG1-222	ENST00000545308	NUTM2F	A1L443	756 aa		8.86	□□□□□ -0.99
SNHG1-222	ENST00000545308	DNAJB2	P25686	324 aa		8.86	□□□□□ -0.99

Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms