RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, human

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-218	ENST00000541586	GCC2	Q8IWJ2	1684 aa		41.06	■■■■■ 4.16
CCM2-218	ENST00000541586	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	41.04	■■■■■ 4.16
CCM2-218	ENST00000541586	AGL	P35573	1532 aa		41.03	■■■■■ 4.16
CCM2-218	ENST00000541586	EIF2AK4	Q9P2K8	1649 aa	Known RBP	40.93	■■■■■ 4.14
CCM2-218	ENST00000541586	ESF1	Q9H501	851 aa	Known RBP	40.91	■■■■■ 4.14
CCM2-218	ENST00000541586	TRIM52	Q96A61	297 aa		40.9	■■■■■ 4.14
CCM2-218	ENST00000541586	WASHC2C	Q9Y4E1	1318 aa		40.87	■■■■■ 4.13
CCM2-218	ENST00000541586	BCORL1	Q5H9F3	1711 aa		40.86	■■■■■ 4.13
CCM2-218	ENST00000541586	CLSPN	Q9HAW4	1339 aa		40.85	■■■■■ 4.13
CCM2-218	ENST00000541586	NUP155	O75694	1391 aa		40.81	■■■■■ 4.12
CCM2-218	ENST00000541586	KANK1	Q14678	1352 aa		40.81	■■■■■ 4.12
CCM2-218	ENST00000541586	PPP6R1	Q9UPN7	881 aa		40.81	■■■■■ 4.12
CCM2-218	ENST00000541586	RNF17	Q9BXT8	1623 aa	Known RBP	40.8	■■■■■ 4.12
CCM2-218	ENST00000541586	KDM4F	A0A1W2PPD8	638 aa		40.77	■■■■■ 4.12
CCM2-218	ENST00000541586	PLPPR3	Q6T4P5	718 aa		40.76	■■■■■ 4.12
CCM2-218	ENST00000541586	MROH1	Q8NDA8	1641 aa		40.76	■■■■■ 4.12
CCM2-218	ENST00000541586	DEPDC5	O75140	1603 aa		40.74	■■■■■ 4.11
CCM2-218	ENST00000541586	PRDM15	P57071	1507 aa	Predicted RBP	40.72	■■■■■ 4.11
CCM2-218	ENST00000541586	ADAMTSL3	P82987	1691 aa		40.71	■■■■■ 4.11
CCM2-218	ENST00000541586	MADD	Q8WXG6	1647 aa		40.7	■■■■■ 4.11
CCM2-218	ENST00000541586	UNC13B	O14795	1591 aa		40.7	■■■■■ 4.11
CCM2-218	ENST00000541586	FER1L4	A9Z1Z3	1794 aa		40.68	■■■■■ 4.1
CCM2-218	ENST00000541586	ACIN1	Q9UKV3	1341 aa	Known RBP	40.67	■■■■■ 4.1
CCM2-218	ENST00000541586	KDM5D	Q9BY66	1539 aa		40.66	■■■■■ 4.1
CCM2-218	ENST00000541586	CLTC	Q00610	1675 aa	Known RBP	40.66	■■■■■ 4.1
CCM2-218	ENST00000541586	CEBPA	P49715	358 aa	Predicted RBP	40.64	■■■■■ 4.1
CCM2-218	ENST00000541586	SLC4A1AP	Q9BWU0	796 aa	Known RBP	40.64	■■■■■ 4.1
CCM2-218	ENST00000541586	ABCC3	O15438	1527 aa		40.64	■■■■■ 4.1
CCM2-218	ENST00000541586	ZMYM3	Q14202	1370 aa		40.63	■■■■■ 4.09
CCM2-218	ENST00000541586	CNTLN	Q9NXG0	1405 aa		40.63	■■■■■ 4.09
CCM2-218	ENST00000541586	CEP152	O94986	1710 aa		40.62	■■■■■ 4.09
CCM2-218	ENST00000541586	RIMS1	Q86UR5	1692 aa	Known RBP	40.62	■■■■■ 4.09
CCM2-218	ENST00000541586	VWDE	Q8N2E2	1590 aa		40.6	■■■■■ 4.09
CCM2-218	ENST00000541586	FAM135A	Q9P2D6	1515 aa		40.59	■■■■■ 4.09
CCM2-218	ENST00000541586	MPHOSPH9	Q99550	1183 aa		40.57	■■■■■ 4.09
CCM2-218	ENST00000541586	IQGAP3	Q86VI3	1631 aa		40.55	■■■■■ 4.08
CCM2-218	ENST00000541586	ZC3H13	Q5T200	1668 aa	Known RBP	40.54	■■■■■ 4.08
CCM2-218	ENST00000541586	PZP	P20742	1482 aa		40.53	■■■■■ 4.08
CCM2-218	ENST00000541586	PKD2	Q13563	968 aa		40.52	■■■■■ 4.08
CCM2-218	ENST00000541586	LMTK2	Q8IWU2	1503 aa		40.51	■■■■■ 4.08
CCM2-218	ENST00000541586	PTPRM	P28827	1452 aa		40.51	■■■■■ 4.08
CCM2-218	ENST00000541586	FBXO31	Q5XUX0	539 aa	Predicted RBP	40.5	■■■■■ 4.07
CCM2-218	ENST00000541586	CAMSAP1	Q5T5Y3	1602 aa		40.49	■■■■■ 4.07
CCM2-218	ENST00000541586	FOXD1	Q16676	465 aa		40.48	■■■■■ 4.07
CCM2-218	ENST00000541586	CFAP65	Q6ZU64	1925 aa	Known RBP	40.46	■■■■■ 4.07
CCM2-218	ENST00000541586	MROH2A	A6NES4	1674 aa		40.45	■■■■■ 4.07
CCM2-218	ENST00000541586	NPAT	Q14207	1427 aa		40.45	■■■■■ 4.07
CCM2-218	ENST00000541586	TET3	O43151	1660 aa		40.44	■■■■■ 4.06
CCM2-218	ENST00000541586	C3	P01024	1663 aa		40.42	■■■■■ 4.06
CCM2-218	ENST00000541586	EFCAB6	Q5THR3	1501 aa		40.42	■■■■■ 4.06
CCM2-218	ENST00000541586	ARHGAP31	Q2M1Z3	1444 aa		40.4	■■■■■ 4.06
CCM2-218	ENST00000541586	SIN3A	Q96ST3	1273 aa		40.37	■■■■■ 4.05
CCM2-218	ENST00000541586		E9PCH4	1651 aa		40.36	■■■■■ 4.05
CCM2-218	ENST00000541586	RPRD2	Q5VT52	1461 aa	Known RBP	40.32	■■■■■ 4.04
CCM2-218	ENST00000541586	NEUROD1	Q13562	356 aa		40.3	■■■■■ 4.04
CCM2-218	ENST00000541586	ERVK-7	P63135	1459 aa		40.28	■■■■■ 4.04
CCM2-218	ENST00000541586	TNR	Q92752	1358 aa		40.25	■■■■■ 4.03
CCM2-218	ENST00000541586	PREX1	Q8TCU6	1659 aa		40.24	■■■■■ 4.03
CCM2-218	ENST00000541586	NOS1	P29475	1434 aa		40.21	■■■■■ 4.03
CCM2-218	ENST00000541586	SPATA31D1	Q6ZQQ2	1576 aa		40.2	■■■■■ 4.03
CCM2-218	ENST00000541586	AEBP2	Q6ZN18	517 aa	Predicted RBP	40.2	■■■■■ 4.03
CCM2-218	ENST00000541586	ANKRD30B	Q9BXX2	1392 aa		40.18	■■■■■ 4.02
CCM2-218	ENST00000541586	IDI1	Q13907	227 aa		40.16	■■■■■ 4.02
CCM2-218	ENST00000541586	PTPRT	O14522	1441 aa		40.16	■■■■■ 4.02
CCM2-218	ENST00000541586	TIMELESS	Q9UNS1	1208 aa		40.15	■■■■■ 4.02
CCM2-218	ENST00000541586	PLA2R1	Q13018	1463 aa		40.14	■■■■■ 4.02
CCM2-218	ENST00000541586	SETD1B	Q9UPS6	1966 aa	Known RBP	40.14	■■■■■ 4.02
CCM2-218	ENST00000541586	SLC52A1	Q9NWF4	448 aa		40.13	■■■■■ 4.02
CCM2-218	ENST00000541586	SYNM	O15061	1565 aa		40.12	■■■■■ 4.01
CCM2-218	ENST00000541586	SPHKAP	Q2M3C7	1700 aa		40.12	■■■■■ 4.01
CCM2-218	ENST00000541586	CHGA	P10645	457 aa	Known RBP	40.11	■■■■■ 4.01
CCM2-218	ENST00000541586	UGGT1	Q9NYU2	1555 aa		40.1	■■■■■ 4.01
CCM2-218	ENST00000541586	STAG3	Q9UJ98	1225 aa		40.09	■■■■■ 4.01
CCM2-218	ENST00000541586	UHRF1BP1	Q6BDS2	1440 aa		40.06	■■■■■ 4
CCM2-218	ENST00000541586	TRPM2	O94759	1503 aa		40.04	■■■■■ 4
CCM2-218	ENST00000541586	CCDC144A	A2RUR9	1427 aa		40.04	■■■■■ 4
CCM2-218	ENST00000541586	TONSL	Q96HA7	1378 aa		40.04	■■■■■ 4
CCM2-218	ENST00000541586	NLRP1	Q9C000	1473 aa		40.01	■■■■■ 4
CCM2-218	ENST00000541586	MYO3A	Q8NEV4	1616 aa		40	■■■■□ 3.99
CCM2-218	ENST00000541586	CLTCL1	P53675	1640 aa		39.97	■■■■□ 3.99
CCM2-218	ENST00000541586	A2ML1	A8K2U0	1454 aa		39.94	■■■■□ 3.99
CCM2-218	ENST00000541586	PIK3C2B	O00750	1634 aa		39.93	■■■■□ 3.98
CCM2-218	ENST00000541586	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	39.92	■■■■□ 3.98
CCM2-218	ENST00000541586	RGL3	Q3MIN7	710 aa		39.91	■■■■□ 3.98
CCM2-218	ENST00000541586	THEMIS	Q8N1K5	641 aa	Predicted RBP	39.91	■■■■□ 3.98
CCM2-218	ENST00000541586	HSPA2	P54652	639 aa		39.91	■■■■□ 3.98
CCM2-218	ENST00000541586	ZNF326	Q5BKZ1	582 aa	Known RBP	39.91	■■■■□ 3.98
CCM2-218	ENST00000541586	PPP1R15A	O75807	674 aa	Predicted RBP	39.9	■■■■□ 3.98
CCM2-218	ENST00000541586	LMTK3	Q96Q04	1460 aa		39.86	■■■■□ 3.97
CCM2-218	ENST00000541586	KIF1B	O60333	1816 aa		39.82	■■■■□ 3.96
CCM2-218	ENST00000541586	ADGRB3	O60242	1522 aa		39.82	■■■■□ 3.96
CCM2-218	ENST00000541586	ZNF142	P52746	1687 aa	Predicted RBP	39.81	■■■■□ 3.96
CCM2-218	ENST00000541586	UBR1	Q8IWV7	1749 aa		39.81	■■■■□ 3.96
CCM2-218	ENST00000541586	TMEM131L	A2VDJ0	1609 aa		39.8	■■■■□ 3.96
CCM2-218	ENST00000541586	NUTM2D	Q5VT03	806 aa	Predicted RBP	39.78	■■■■□ 3.96
CCM2-218	ENST00000541586	L3MBTL2	Q969R5	705 aa		39.78	■■■■□ 3.96
CCM2-218	ENST00000541586	MYO5B	Q9ULV0	1848 aa		39.77	■■■■□ 3.96
CCM2-218	ENST00000541586	SPATA31E1	Q6ZUB1	1445 aa		39.73	■■■■□ 3.95
CCM2-218	ENST00000541586	TMEM2	Q9UHN6	1383 aa		39.72	■■■■□ 3.95
CCM2-218	ENST00000541586	TXNDC2	Q86VQ3	553 aa		39.71	■■■■□ 3.95

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