RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 GGT6Q6P531 493 aa28.37■■■□□ 2.13
VPS33A-205ENST00000541169 ANKRD50Q9ULJ7 1429 aa28.36■■■□□ 2.13
VPS33A-205ENST00000541169 AEBP2Q6ZN18 517 aaPredicted RBP28.34■■■□□ 2.13
VPS33A-205ENST00000541169 PTPRMP28827 1452 aa28.34■■■□□ 2.13
VPS33A-205ENST00000541169 RIMS1Q86UR5 1692 aaKnown RBP28.33■■■□□ 2.13
VPS33A-205ENST00000541169 MROH2AA6NES4 1674 aa28.32■■■□□ 2.12
VPS33A-205ENST00000541169 DEPDC5O75140 1603 aa28.29■■■□□ 2.12
VPS33A-205ENST00000541169 KDM5DQ9BY66 1539 aa28.29■■■□□ 2.12
VPS33A-205ENST00000541169 ZC3H13Q5T200 1668 aaKnown RBP28.29■■■□□ 2.12
VPS33A-205ENST00000541169 KANK1Q14678 1352 aa28.28■■■□□ 2.12
VPS33A-205ENST00000541169 PRDM15P57071 1507 aaPredicted RBP28.28■■■□□ 2.12
VPS33A-205ENST00000541169 WASHC2CQ9Y4E1 1318 aa28.27■■■□□ 2.12
VPS33A-205ENST00000541169 HFM1A2PYH4 1435 aa28.26■■■□□ 2.12
VPS33A-205ENST00000541169 ACIN1Q9UKV3 1341 aaKnown RBP28.25■■■□□ 2.11
VPS33A-205ENST00000541169 GCC2Q8IWJ2 1684 aa28.24■■■□□ 2.11
VPS33A-205ENST00000541169 CLTCQ00610 1675 aaKnown RBP28.23■■■□□ 2.11
VPS33A-205ENST00000541169 MROH1Q8NDA8 1641 aa28.22■■■□□ 2.11
VPS33A-205ENST00000541169 ZMYM3Q14202 1370 aa28.22■■■□□ 2.11
VPS33A-205ENST00000541169 NAIPQ13075 1403 aa28.21■■■□□ 2.11
VPS33A-205ENST00000541169 ABCC3O15438 1527 aa28.18■■■□□ 2.1
VPS33A-205ENST00000541169 C3P01024 1663 aa28.18■■■□□ 2.1
VPS33A-205ENST00000541169 UNC13BO14795 1591 aa28.17■■■□□ 2.1
VPS33A-205ENST00000541169 NPATQ14207 1427 aa28.17■■■□□ 2.1
VPS33A-205ENST00000541169 VWDEQ8N2E2 1590 aa28.16■■■□□ 2.1
VPS33A-205ENST00000541169 LMTK2Q8IWU2 1503 aa28.15■■■□□ 2.1
VPS33A-205ENST00000541169 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.14■■■□□ 2.1
VPS33A-205ENST00000541169 SETD1BQ9UPS6 1966 aaKnown RBP28.13■■■□□ 2.09
VPS33A-205ENST00000541169 ARHGAP31Q2M1Z3 1444 aa28.12■■■□□ 2.09
VPS33A-205ENST00000541169 PZPP20742 1482 aa28.12■■■□□ 2.09
VPS33A-205ENST00000541169 CAMSAP1Q5T5Y3 1602 aa28.1■■■□□ 2.09
VPS33A-205ENST00000541169 CEP152O94986 1710 aa28.09■■■□□ 2.09
VPS33A-205ENST00000541169 CEBPAP49715 358 aaPredicted RBP28.08■■■□□ 2.09
VPS33A-205ENST00000541169 IQGAP3Q86VI3 1631 aa28.07■■■□□ 2.08
VPS33A-205ENST00000541169 NUP155O75694 1391 aa28.06■■■□□ 2.08
VPS33A-205ENST00000541169 SETD5Q9C0A6 1442 aa28.06■■■□□ 2.08
VPS33A-205ENST00000541169 TET3O43151 1660 aa28.05■■■□□ 2.08
VPS33A-205ENST00000541169 RPRD2Q5VT52 1461 aaKnown RBP28.05■■■□□ 2.08
VPS33A-205ENST00000541169 PREX1Q8TCU6 1659 aa28.03■■■□□ 2.08
VPS33A-205ENST00000541169 EFCAB6Q5THR3 1501 aa28.02■■■□□ 2.08
VPS33A-205ENST00000541169 PLPPR3Q6T4P5 718 aa28.02■■■□□ 2.08
VPS33A-205ENST00000541169 HRCP23327 699 aa28.01■■■□□ 2.07
VPS33A-205ENST00000541169 TRIM26Q12899 539 aaPredicted RBP28■■■□□ 2.07
VPS33A-205ENST00000541169 UHRF1BP1Q6BDS2 1440 aa28■■■□□ 2.07
VPS33A-205ENST00000541169 SPATA31D1Q6ZQQ2 1576 aa27.98■■■□□ 2.07
VPS33A-205ENST00000541169 TNRQ92752 1358 aa27.97■■■□□ 2.07
VPS33A-205ENST00000541169 ERVK-7P63135 1459 aa27.95■■■□□ 2.07
VPS33A-205ENST00000541169 TRIM52Q96A61 297 aa27.95■■■□□ 2.06
VPS33A-205ENST00000541169 NLRP1Q9C000 1473 aa27.94■■■□□ 2.06
VPS33A-205ENST00000541169 FBXO31Q5XUX0 539 aaPredicted RBP27.92■■■□□ 2.06
VPS33A-205ENST00000541169 LMTK3Q96Q04 1460 aa27.91■■■□□ 2.06
VPS33A-205ENST00000541169 RAB3GAP2Q9H2M9 1393 aa27.91■■■□□ 2.06
VPS33A-205ENST00000541169 MYO3AQ8NEV4 1616 aa27.9■■■□□ 2.06
VPS33A-205ENST00000541169 ZNF142P52746 1687 aaPredicted RBP27.89■■■□□ 2.06
VPS33A-205ENST00000541169 E9PCH4 1651 aa27.88■■■□□ 2.05
VPS33A-205ENST00000541169 NOS1P29475 1434 aa27.87■■■□□ 2.05
VPS33A-205ENST00000541169 SLC4A1APQ9BWU0 796 aaKnown RBP27.86■■■□□ 2.05
VPS33A-205ENST00000541169 SLC52A1Q9NWF4 448 aa27.86■■■□□ 2.05
VPS33A-205ENST00000541169 A2ML1A8K2U0 1454 aa27.86■■■□□ 2.05
VPS33A-205ENST00000541169 CFAP65Q6ZU64 1925 aaKnown RBP27.86■■■□□ 2.05
VPS33A-205ENST00000541169 CEP170BQ9Y4F5 1589 aaPredicted RBP27.85■■■□□ 2.05
VPS33A-205ENST00000541169 KDM5AP29375 1690 aaKnown RBP27.8■■■□□ 2.04
VPS33A-205ENST00000541169 MPHOSPH9Q99550 1183 aa27.79■■■□□ 2.04
VPS33A-205ENST00000541169 PKD2Q13563 968 aa27.78■■■□□ 2.04
VPS33A-205ENST00000541169 THEMISQ8N1K5 641 aaPredicted RBP27.78■■■□□ 2.04
VPS33A-205ENST00000541169 PTPRTO14522 1441 aa27.77■■■□□ 2.04
VPS33A-205ENST00000541169 SYNMO15061 1565 aa27.77■■■□□ 2.04
VPS33A-205ENST00000541169 UGGT1Q9NYU2 1555 aa27.77■■■□□ 2.04
VPS33A-205ENST00000541169 SPHKAPQ2M3C7 1700 aa27.75■■■□□ 2.03
VPS33A-205ENST00000541169 PLA2R1Q13018 1463 aa27.74■■■□□ 2.03
VPS33A-205ENST00000541169 PIK3C2BO00750 1634 aa27.73■■■□□ 2.03
VPS33A-205ENST00000541169 IDI1Q13907 227 aa27.72■■■□□ 2.03
VPS33A-205ENST00000541169 TRPM2O94759 1503 aa27.71■■■□□ 2.03
VPS33A-205ENST00000541169 STAG3Q9UJ98 1225 aa27.7■■■□□ 2.02
VPS33A-205ENST00000541169 UBR1Q8IWV7 1749 aa27.69■■■□□ 2.02
VPS33A-205ENST00000541169 HSPA2P54652 639 aa27.68■■■□□ 2.02
VPS33A-205ENST00000541169 DMRT2Q9Y5R5 561 aa27.68■■■□□ 2.02
VPS33A-205ENST00000541169 ADGRB3O60242 1522 aa27.66■■■□□ 2.02
VPS33A-205ENST00000541169 HDGFP51858 240 aaKnown RBP27.62■■■□□ 2.01
VPS33A-205ENST00000541169 ANKLE2Q86XL3 938 aa27.62■■■□□ 2.01
VPS33A-205ENST00000541169 SLIT1O75093 1534 aa27.61■■■□□ 2.01
VPS33A-205ENST00000541169 TMEM131LA2VDJ0 1609 aa27.59■■■□□ 2.01
VPS33A-205ENST00000541169 CCDC144AA2RUR9 1427 aa27.58■■■□□ 2.01
VPS33A-205ENST00000541169 ARHGAP23Q9P227 1491 aa27.58■■■□□ 2.01
VPS33A-205ENST00000541169 EID1Q9Y6B2 187 aa27.58■■■□□ 2.01
VPS33A-205ENST00000541169 TMEM2Q9UHN6 1383 aa27.58■■■□□ 2.01
VPS33A-205ENST00000541169 STRCQ7RTU9 1775 aa27.58■■■□□ 2
VPS33A-205ENST00000541169 KIF1BO60333 1816 aa27.57■■■□□ 2
VPS33A-205ENST00000541169 POLR1AO95602 1720 aaPredicted RBP27.56■■■□□ 2
VPS33A-205ENST00000541169 CLTCL1P53675 1640 aa27.56■■■□□ 2
VPS33A-205ENST00000541169 FOXD1Q16676 465 aa27.54■■■□□ 2
VPS33A-205ENST00000541169 CHGAP10645 457 aaKnown RBP27.53■■■□□ 2
VPS33A-205ENST00000541169 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.53■■■□□ 2
VPS33A-205ENST00000541169 MED14O60244 1454 aa27.52■■■□□ 2
VPS33A-205ENST00000541169 NEURL4Q96JN8 1562 aa27.52■■■□□ 2
VPS33A-205ENST00000541169 SCAF11Q99590 1463 aaKnown RBP27.51■■■□□ 2
VPS33A-205ENST00000541169 ANKRD30BQ9BXX2 1392 aa27.5■■□□□ 1.99
VPS33A-205ENST00000541169 TXNDC2Q86VQ3 553 aa27.49■■□□□ 1.99
VPS33A-205ENST00000541169 PCGF6Q9BYE7 350 aa27.49■■□□□ 1.99
VPS33A-205ENST00000541169 MYO5BQ9ULV0 1848 aa27.48■■□□□ 1.99
VPS33A-205ENST00000541169 NCKAP5LQ9HCH0 1330 aa27.48■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms