RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 CCDC144AA2RUR9 1427 aa28.95■■■□□ 2.22
SMPDL3A-203ENST00000539041 RALGAPBQ86X10 1494 aa28.95■■■□□ 2.22
SMPDL3A-203ENST00000539041 KDM5CP41229 1560 aa28.94■■■□□ 2.22
SMPDL3A-203ENST00000539041 E9PCH4 1651 aa28.94■■■□□ 2.22
SMPDL3A-203ENST00000539041 ANP32CO43423 234 aa28.93■■■□□ 2.22
SMPDL3A-203ENST00000539041 KIDINS220Q9ULH0 1771 aa28.93■■■□□ 2.22
SMPDL3A-203ENST00000539041 PLA2R1Q13018 1463 aa28.92■■■□□ 2.22
SMPDL3A-203ENST00000539041 ATP10AO60312 1499 aa28.92■■■□□ 2.22
SMPDL3A-203ENST00000539041 TET3O43151 1660 aa28.89■■■□□ 2.22
SMPDL3A-203ENST00000539041 CCDC7Q96M83 1385 aa28.88■■■□□ 2.21
SMPDL3A-203ENST00000539041 SPHKAPQ2M3C7 1700 aa28.88■■■□□ 2.21
SMPDL3A-203ENST00000539041 CD109Q6YHK3 1445 aa28.87■■■□□ 2.21
SMPDL3A-203ENST00000539041 ZNF326Q5BKZ1 582 aaKnown RBP28.87■■■□□ 2.21
SMPDL3A-203ENST00000539041 CCER2I3L3R5 266 aa28.86■■■□□ 2.21
SMPDL3A-203ENST00000539041 TRPM1Q7Z4N2 1603 aa28.86■■■□□ 2.21
SMPDL3A-203ENST00000539041 ZNF518AQ6AHZ1 1483 aa28.85■■■□□ 2.21
SMPDL3A-203ENST00000539041 CNTLNQ9NXG0 1405 aa28.85■■■□□ 2.21
SMPDL3A-203ENST00000539041 VWDEQ8N2E2 1590 aa28.85■■■□□ 2.21
SMPDL3A-203ENST00000539041 BCORL1Q5H9F3 1711 aa28.85■■■□□ 2.21
SMPDL3A-203ENST00000539041 GTF3C3Q9Y5Q9 886 aa28.83■■■□□ 2.21
SMPDL3A-203ENST00000539041 CEP152O94986 1710 aa28.83■■■□□ 2.21
SMPDL3A-203ENST00000539041 USP47Q96K76 1375 aa28.83■■■□□ 2.21
SMPDL3A-203ENST00000539041 PRDM15P57071 1507 aaPredicted RBP28.81■■■□□ 2.2
SMPDL3A-203ENST00000539041 C11orf95C9JLR9 678 aaPredicted RBP28.8■■■□□ 2.2
SMPDL3A-203ENST00000539041 DCAF11Q8TEB1 546 aa28.8■■■□□ 2.2
SMPDL3A-203ENST00000539041 MROH1Q8NDA8 1641 aa28.8■■■□□ 2.2
SMPDL3A-203ENST00000539041 DHX29Q7Z478 1369 aaKnown RBP28.79■■■□□ 2.2
SMPDL3A-203ENST00000539041 A2MP01023 1474 aa28.79■■■□□ 2.2
SMPDL3A-203ENST00000539041 RIMBP3CA6NJZ7 1639 aa28.78■■■□□ 2.2
SMPDL3A-203ENST00000539041 RIMBP3BA6NNM3 1639 aa28.78■■■□□ 2.2
SMPDL3A-203ENST00000539041 RIMBP3Q9UFD9 1639 aa28.78■■■□□ 2.2
SMPDL3A-203ENST00000539041 TRPM2O94759 1503 aa28.78■■■□□ 2.2
SMPDL3A-203ENST00000539041 MYT1LQ9UL68 1186 aa28.78■■■□□ 2.2
SMPDL3A-203ENST00000539041 KDM2AQ9Y2K7 1162 aa28.78■■■□□ 2.2
SMPDL3A-203ENST00000539041 HECW2Q9P2P5 1572 aa28.77■■■□□ 2.2
SMPDL3A-203ENST00000539041 POGZQ7Z3K3 1410 aa28.77■■■□□ 2.2
SMPDL3A-203ENST00000539041 KANK1Q14678 1352 aa28.76■■■□□ 2.19
SMPDL3A-203ENST00000539041 PRAG1Q86YV5 1406 aa28.75■■■□□ 2.19
SMPDL3A-203ENST00000539041 LAMC1P11047 1609 aa28.75■■■□□ 2.19
SMPDL3A-203ENST00000539041 MAP3K4Q9Y6R4 1608 aa28.75■■■□□ 2.19
SMPDL3A-203ENST00000539041 KIF7Q2M1P5 1343 aa28.74■■■□□ 2.19
SMPDL3A-203ENST00000539041 RNF17Q9BXT8 1623 aaKnown RBP28.74■■■□□ 2.19
SMPDL3A-203ENST00000539041 NEO1Q92859 1461 aa28.74■■■□□ 2.19
SMPDL3A-203ENST00000539041 MLH3Q9UHC1 1453 aa28.71■■■□□ 2.19
SMPDL3A-203ENST00000539041 CLTCL1P53675 1640 aa28.71■■■□□ 2.19
SMPDL3A-203ENST00000539041 CARD11Q9BXL7 1154 aa28.7■■■□□ 2.19
SMPDL3A-203ENST00000539041 PTPRTO14522 1441 aa28.7■■■□□ 2.18
SMPDL3A-203ENST00000539041 KIF3BO15066 747 aa28.69■■■□□ 2.18
SMPDL3A-203ENST00000539041 RGL3Q3MIN7 710 aa28.67■■■□□ 2.18
SMPDL3A-203ENST00000539041 GLI2P10070 1586 aa28.67■■■□□ 2.18
SMPDL3A-203ENST00000539041 ABCA6Q8N139 1617 aa28.67■■■□□ 2.18
SMPDL3A-203ENST00000539041 ROCK2O75116 1388 aaKnown RBP28.67■■■□□ 2.18
SMPDL3A-203ENST00000539041 ARID4BQ4LE39 1312 aaPredicted RBP28.66■■■□□ 2.18
SMPDL3A-203ENST00000539041 RICTORQ6R327 1708 aa28.65■■■□□ 2.18
SMPDL3A-203ENST00000539041 EFCAB6Q5THR3 1501 aa28.64■■■□□ 2.18
SMPDL3A-203ENST00000539041 FRMPD1Q5SYB0 1578 aa28.64■■■□□ 2.18
SMPDL3A-203ENST00000539041 KIF1BO60333 1816 aa28.63■■■□□ 2.17
SMPDL3A-203ENST00000539041 PPRC1Q5VV67 1664 aaKnown RBP28.63■■■□□ 2.17
SMPDL3A-203ENST00000539041 LMTK2Q8IWU2 1503 aa28.63■■■□□ 2.17
SMPDL3A-203ENST00000539041 NEURL4Q96JN8 1562 aa28.61■■■□□ 2.17
SMPDL3A-203ENST00000539041 MADDQ8WXG6 1647 aa28.61■■■□□ 2.17
SMPDL3A-203ENST00000539041 GPRASP1Q5JY77 1395 aa28.61■■■□□ 2.17
SMPDL3A-203ENST00000539041 CYB5RLQ6IPT4 315 aa28.59■■■□□ 2.17
SMPDL3A-203ENST00000539041 DIP2CQ9Y2E4 1556 aa28.55■■■□□ 2.16
SMPDL3A-203ENST00000539041 DIP2BQ9P265 1576 aa28.53■■■□□ 2.16
SMPDL3A-203ENST00000539041 ST20-MTHFSA0A0A6YYL1 179 aa28.53■■■□□ 2.16
SMPDL3A-203ENST00000539041 IFT172Q9UG01 1749 aa28.52■■■□□ 2.16
SMPDL3A-203ENST00000539041 PRKRIP1Q9H875 184 aaPredicted RBP28.52■■■□□ 2.16
SMPDL3A-203ENST00000539041 KIAA1210Q9ULL0 1709 aa28.51■■■□□ 2.15
SMPDL3A-203ENST00000539041 IQGAP1P46940 1657 aa28.5■■■□□ 2.15
SMPDL3A-203ENST00000539041 CFAP65Q6ZU64 1925 aaKnown RBP28.5■■■□□ 2.15
SMPDL3A-203ENST00000539041 NBPF1Q3BBV0 1214 aa28.5■■■□□ 2.15
SMPDL3A-203ENST00000539041 MROH2AA6NES4 1674 aa28.49■■■□□ 2.15
SMPDL3A-203ENST00000539041 STAC3Q96MF2 364 aa28.48■■■□□ 2.15
SMPDL3A-203ENST00000539041 POLR3GLQ9BT43 218 aa28.47■■■□□ 2.15
SMPDL3A-203ENST00000539041 CAMSAP1Q5T5Y3 1602 aa28.47■■■□□ 2.15
SMPDL3A-203ENST00000539041 TSPOAP1O95153 1857 aa28.47■■■□□ 2.15
SMPDL3A-203ENST00000539041 UGGT1Q9NYU2 1555 aa28.46■■■□□ 2.15
SMPDL3A-203ENST00000539041 RAPGEF3O95398 923 aa28.44■■■□□ 2.14
SMPDL3A-203ENST00000539041 ZC3H13Q5T200 1668 aaKnown RBP28.43■■■□□ 2.14
SMPDL3A-203ENST00000539041 ABCC3O15438 1527 aa28.43■■■□□ 2.14
SMPDL3A-203ENST00000539041 COL17A1Q9UMD9 1497 aaPredicted RBP28.4■■■□□ 2.14
SMPDL3A-203ENST00000539041 ZMYM4Q5VZL5 1548 aa28.4■■■□□ 2.14
SMPDL3A-203ENST00000539041 MYOM2P54296 1465 aa28.39■■■□□ 2.14
SMPDL3A-203ENST00000539041 ADGRB3O60242 1522 aa28.37■■■□□ 2.13
SMPDL3A-203ENST00000539041 NPATQ14207 1427 aa28.37■■■□□ 2.13
SMPDL3A-203ENST00000539041 SIGLEC1Q9BZZ2 1709 aa28.36■■■□□ 2.13
SMPDL3A-203ENST00000539041 GGT6Q6P531 493 aa28.36■■■□□ 2.13
SMPDL3A-203ENST00000539041 PPLO60437 1756 aa28.35■■■□□ 2.13
SMPDL3A-203ENST00000539041 FAM69CQ0P6D2 419 aa28.34■■■□□ 2.13
SMPDL3A-203ENST00000539041 CCDC184Q52MB2 194 aa28.33■■■□□ 2.13
SMPDL3A-203ENST00000539041 YEATS2Q9ULM3 1422 aa28.32■■■□□ 2.12
SMPDL3A-203ENST00000539041 KIF13AQ9H1H9 1805 aa28.32■■■□□ 2.12
SMPDL3A-203ENST00000539041 TESK2Q96S53 571 aa28.31■■■□□ 2.12
SMPDL3A-203ENST00000539041 MRS2Q9HD23 443 aa28.3■■■□□ 2.12
SMPDL3A-203ENST00000539041 SCAF11Q99590 1463 aaKnown RBP28.3■■■□□ 2.12
SMPDL3A-203ENST00000539041 PIK3C2BO00750 1634 aa28.29■■■□□ 2.12
SMPDL3A-203ENST00000539041 WASHC2CQ9Y4E1 1318 aa28.29■■■□□ 2.12
SMPDL3A-203ENST00000539041 DISP3Q9P2K9 1392 aa28.27■■■□□ 2.12
SMPDL3A-203ENST00000539041 NRXN1Q9ULB1 1477 aa28.26■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms