RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 NLRP1Q9C000 1473 aa15.29■□□□□ 0.04
USP28-205ENST00000537706 PLXNC1O60486 1568 aa15.29■□□□□ 0.04
USP28-205ENST00000537706 HNRNPMP52272 730 aaKnown RBP eCLIP15.27■□□□□ 0.04
USP28-205ENST00000537706 UGGT1Q9NYU2 1555 aa15.27■□□□□ 0.04
USP28-205ENST00000537706 PLEKHH2Q8IVE3 1493 aa15.27■□□□□ 0.03
USP28-205ENST00000537706 FBXO31Q5XUX0 539 aaPredicted RBP15.27■□□□□ 0.03
USP28-205ENST00000537706 SETD1AO15047 1707 aaKnown RBP15.26■□□□□ 0.03
USP28-205ENST00000537706 IQGAP1P46940 1657 aa15.26■□□□□ 0.03
USP28-205ENST00000537706 SYCP2Q9BX26 1530 aa15.26■□□□□ 0.03
USP28-205ENST00000537706 PZPP20742 1482 aa15.25■□□□□ 0.03
USP28-205ENST00000537706 MIA2Q96PC5 1412 aa15.25■□□□□ 0.03
USP28-205ENST00000537706 FOXD1Q16676 465 aa15.24■□□□□ 0.03
USP28-205ENST00000537706 ZNF772Q68DY9 489 aaPredicted RBP15.24■□□□□ 0.03
USP28-205ENST00000537706 KIAA1107Q9UPP5 1409 aa15.24■□□□□ 0.03
USP28-205ENST00000537706 TRIM52Q96A61 297 aa15.22■□□□□ 0.03
USP28-205ENST00000537706 WASHC2CQ9Y4E1 1318 aa15.22■□□□□ 0.03
USP28-205ENST00000537706 CCDC18Q5T9S5 1454 aa15.22■□□□□ 0.03
USP28-205ENST00000537706 MEX3CQ5U5Q3 659 aaKnown RBP15.21■□□□□ 0.03
USP28-205ENST00000537706 INO80Q9ULG1 1556 aaPredicted RBP15.21■□□□□ 0.03
USP28-205ENST00000537706 KDM5DQ9BY66 1539 aa15.2■□□□□ 0.02
USP28-205ENST00000537706 JCADQ9P266 1359 aa15.19■□□□□ 0.02
USP28-205ENST00000537706 UBTFP17480 764 aaKnown RBP15.19■□□□□ 0.02
USP28-205ENST00000537706 CFDP1Q9UEE9 299 aaPredicted RBP15.19■□□□□ 0.02
USP28-205ENST00000537706 ADGBQ8N7X0 1667 aa15.19■□□□□ 0.02
USP28-205ENST00000537706 DHX29Q7Z478 1369 aaKnown RBP15.18■□□□□ 0.02
USP28-205ENST00000537706 KIF3BO15066 747 aa15.18■□□□□ 0.02
USP28-205ENST00000537706 LRRC9Q6ZRR7 1453 aa15.17■□□□□ 0.02
USP28-205ENST00000537706 STRCP1A6NGW2 1772 aa15.17■□□□□ 0.02
USP28-205ENST00000537706 CDC42BPAQ5VT25 1732 aa15.17■□□□□ 0.02
USP28-205ENST00000537706 RXRBP28702 533 aa15.16■□□□□ 0.02
USP28-205ENST00000537706 ARHGAP35Q9NRY4 1499 aa15.16■□□□□ 0.02
USP28-205ENST00000537706 GPATCH8Q9UKJ3 1502 aaKnown RBP15.15■□□□□ 0.02
USP28-205ENST00000537706 RTEL1-TNFRSF6BF6WH68 1400 aa15.14■□□□□ 0.01
USP28-205ENST00000537706 EID1Q9Y6B2 187 aa15.13■□□□□ 0.01
USP28-205ENST00000537706 CCNB3Q8WWL7 1395 aa15.13■□□□□ 0.01
USP28-205ENST00000537706 SCAF11Q99590 1463 aaKnown RBP15.13■□□□□ 0.01
USP28-205ENST00000537706 SPATA31A6Q5VVP1 1343 aa15.13■□□□□ 0.01
USP28-205ENST00000537706 TXNDC2Q86VQ3 553 aa15.11■□□□□ 0.01
USP28-205ENST00000537706 TMEM94Q12767 1356 aa15.11■□□□□ 0.01
USP28-205ENST00000537706 ROBO1Q9Y6N7 1651 aa15.1■□□□□ 0.01
USP28-205ENST00000537706 CHIC1Q5VXU3 224 aa15.1■□□□□ 0.01
USP28-205ENST00000537706 PROSER2Q86WR7 435 aaPredicted RBP15.1■□□□□ 0.01
USP28-205ENST00000537706 CASKIN1Q8WXD9 1431 aa15.1■□□□□ 0.01
USP28-205ENST00000537706 CDK12Q9NYV4 1490 aaPredicted RBP15.1■□□□□ 0.01
USP28-205ENST00000537706 ZRANB1Q9UGI0 708 aa15.09■□□□□ 0.01
USP28-205ENST00000537706 MSH6P52701 1360 aa15.07■□□□□ 0
USP28-205ENST00000537706 ZC3H13Q5T200 1668 aaKnown RBP15.07■□□□□ 0
USP28-205ENST00000537706 KCNA6P17658 529 aa15.07■□□□□ 0
USP28-205ENST00000537706 LRRIQ1Q96JM4 1722 aa15.06■□□□□ 0
USP28-205ENST00000537706 FGD6Q6ZV73 1430 aa15.06■□□□□ 0
USP28-205ENST00000537706 EHMT2Q96KQ7 1210 aa15.05■□□□□ 0
USP28-205ENST00000537706 SLAIN2Q9P270 581 aa15.05■□□□□ 0
USP28-205ENST00000537706 PHLPP1O60346 1717 aa15.05■□□□□ 0
USP28-205ENST00000537706 LTKP29376 864 aa15.04■□□□□ -0
USP28-205ENST00000537706 NUTM2BA6NNL0 878 aaPredicted RBP15.02■□□□□ -0
USP28-205ENST00000537706 NUTM2EB1AL46 878 aaPredicted RBP15.02■□□□□ -0
USP28-205ENST00000537706 RSPH4AQ5TD94 716 aa15.02■□□□□ -0
USP28-205ENST00000537706 NUTM2DQ5VT03 806 aaPredicted RBP15.02■□□□□ -0
USP28-205ENST00000537706 NUTM2AQ8IVF1 878 aaPredicted RBP15.02■□□□□ -0
USP28-205ENST00000537706 XIRP1Q702N8 1843 aaKnown RBP15.02■□□□□ -0
USP28-205ENST00000537706 ERVK-7P63135 1459 aa15.02□□□□□ -0.01
USP28-205ENST00000537706 STAG3Q9UJ98 1225 aa15.02□□□□□ -0.01
USP28-205ENST00000537706 SLIT1O75093 1534 aa15.01□□□□□ -0.01
USP28-205ENST00000537706 ARHGAP23Q9P227 1491 aa15.01□□□□□ -0.01
USP28-205ENST00000537706 LRP6O75581 1613 aa15□□□□□ -0.01
USP28-205ENST00000537706 FYCO1Q9BQS8 1478 aa14.99□□□□□ -0.01
USP28-205ENST00000537706 MBD5Q9P267 1494 aa14.99□□□□□ -0.01
USP28-205ENST00000537706 MTUS2Q5JR59 1369 aa14.98□□□□□ -0.01
USP28-205ENST00000537706 MAP3K1Q13233 1512 aa14.98□□□□□ -0.01
USP28-205ENST00000537706 ZNF644Q9H582 1327 aaPredicted RBP14.98□□□□□ -0.01
USP28-205ENST00000537706 PRDM15P57071 1507 aaPredicted RBP14.97□□□□□ -0.01
USP28-205ENST00000537706 NKTRP30414 1462 aaKnown RBP14.97□□□□□ -0.01
USP28-205ENST00000537706 RBM6P78332 1123 aaKnown RBP14.97□□□□□ -0.01
USP28-205ENST00000537706 RBM33Q96EV2 1170 aaKnown RBP14.97□□□□□ -0.01
USP28-205ENST00000537706 ABCC3O15438 1527 aa14.97□□□□□ -0.01
USP28-205ENST00000537706 ATAD2Q6PL18 1390 aa14.97□□□□□ -0.01
USP28-205ENST00000537706 NCOA2Q15596 1464 aa14.97□□□□□ -0.01
USP28-205ENST00000537706 CCDC141Q6ZP82 1450 aa14.97□□□□□ -0.01
USP28-205ENST00000537706 UBR1Q8IWV7 1749 aa14.97□□□□□ -0.01
USP28-205ENST00000537706 AFF2P51816 1311 aa14.96□□□□□ -0.01
USP28-205ENST00000537706 TSPY4P0CV99 314 aa14.96□□□□□ -0.02
USP28-205ENST00000537706 TSPY10P0CW01 314 aa14.96□□□□□ -0.02
USP28-205ENST00000537706 BCANQ96GW7 911 aa14.95□□□□□ -0.02
USP28-205ENST00000537706 COL16A1Q07092 1604 aaPredicted RBP14.95□□□□□ -0.02
USP28-205ENST00000537706 TMEM2Q9UHN6 1383 aa14.94□□□□□ -0.02
USP28-205ENST00000537706 NGLY1Q96IV0 654 aa14.94□□□□□ -0.02
USP28-205ENST00000537706 TIAM1Q13009 1591 aa14.93□□□□□ -0.02
USP28-205ENST00000537706 C14orf37Q86TY3 774 aa14.93□□□□□ -0.02
USP28-205ENST00000537706 SLC26A8Q96RN1 970 aa14.93□□□□□ -0.02
USP28-205ENST00000537706 QTRT2Q9H974 415 aaKnown RBP14.93□□□□□ -0.02
USP28-205ENST00000537706 RGS12O14924 1447 aa14.92□□□□□ -0.02
USP28-205ENST00000537706 CADPS2Q86UW7 1296 aa14.9□□□□□ -0.02
USP28-205ENST00000537706 CCDC125Q86Z20 511 aa14.9□□□□□ -0.02
USP28-205ENST00000537706 SHPRHQ149N8 1683 aa14.89□□□□□ -0.03
USP28-205ENST00000537706 ATF3P18847 181 aa14.89□□□□□ -0.03
USP28-205ENST00000537706 NCOA3Q9Y6Q9 1424 aa14.88□□□□□ -0.03
USP28-205ENST00000537706 C8orf37Q96NL8 207 aa14.88□□□□□ -0.03
USP28-205ENST00000537706 NWD1Q149M9 1564 aa14.87□□□□□ -0.03
USP28-205ENST00000537706 AHDC1Q5TGY3 1603 aaPredicted RBP14.87□□□□□ -0.03
USP28-205ENST00000537706 SETBP1Q9Y6X0 1596 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms