RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 NISCHQ9Y2I1 1504 aa23.72■■□□□ 1.39
USP28-205ENST00000537706 ABCC9O60706 1549 aa22.44■■□□□ 1.18
USP28-205ENST00000537706 DNAJC5BQ9UF47 199 aa21.67■■□□□ 1.06
USP28-205ENST00000537706 CCDC180Q9P1Z9 1646 aa21.62■■□□□ 1.05
USP28-205ENST00000537706 RB1CC1Q8TDY2 1594 aa21.05■□□□□ 0.96
USP28-205ENST00000537706 PABPN1Q86U42 306 aaKnown RBP eCLIP20.78■□□□□ 0.92
USP28-205ENST00000537706 NACADO15069 1562 aa20.7■□□□□ 0.9
USP28-205ENST00000537706 DNAJC5Q9H3Z4 198 aa20.63■□□□□ 0.89
USP28-205ENST00000537706 DCAF8L2P0C7V8 631 aa20.51■□□□□ 0.87
USP28-205ENST00000537706 CECR2Q9BXF3 1484 aa20.33■□□□□ 0.85
USP28-205ENST00000537706 UNC13AQ9UPW8 1703 aa20.33■□□□□ 0.84
USP28-205ENST00000537706 BICRAQ9NZM4 1560 aa20.31■□□□□ 0.84
USP28-205ENST00000537706 CC2D2AQ9P2K1 1620 aa20.18■□□□□ 0.82
USP28-205ENST00000537706 SHROOM4Q9ULL8 1493 aa20.15■□□□□ 0.82
USP28-205ENST00000537706 MYO15BQ96JP2 1530 aa20.14■□□□□ 0.81
USP28-205ENST00000537706 EIF4G1Q04637 1599 aaKnown RBP19.96■□□□□ 0.79
USP28-205ENST00000537706 CUX2O14529 1486 aa19.75■□□□□ 0.75
USP28-205ENST00000537706 SCRIBQ14160 1630 aa19.64■□□□□ 0.73
USP28-205ENST00000537706 DCAF1Q9Y4B6 1507 aa19.57■□□□□ 0.72
USP28-205ENST00000537706 ERCC6Q03468 1493 aa19.53■□□□□ 0.72
USP28-205ENST00000537706 ZCCHC6Q5VYS8 1495 aaKnown RBP19.47■□□□□ 0.71
USP28-205ENST00000537706 TRIM41Q8WV44 630 aa19.43■□□□□ 0.7
USP28-205ENST00000537706 NCAPD3P42695 1498 aa19.11■□□□□ 0.65
USP28-205ENST00000537706 NESP48681 1621 aa18.98■□□□□ 0.63
USP28-205ENST00000537706 THOC2Q8NI27 1593 aaKnown RBP18.94■□□□□ 0.62
USP28-205ENST00000537706 ATAD2BQ9ULI0 1458 aa18.91■□□□□ 0.62
USP28-205ENST00000537706 HMGXB3Q12766 1538 aa18.88■□□□□ 0.61
USP28-205ENST00000537706 SMARCA2P51531 1590 aa18.87■□□□□ 0.61
USP28-205ENST00000537706 PDS5BQ9NTI5 1447 aa18.81■□□□□ 0.6
USP28-205ENST00000537706 LAMC3Q9Y6N6 1575 aa18.8■□□□□ 0.6
USP28-205ENST00000537706 OSCARQ8IYS5 282 aa18.75■□□□□ 0.59
USP28-205ENST00000537706 BAZ1BQ9UIG0 1483 aaKnown RBP18.73■□□□□ 0.59
USP28-205ENST00000537706 BAZ1AQ9NRL2 1556 aaPredicted RBP18.67■□□□□ 0.58
USP28-205ENST00000537706 KIF21AQ7Z4S6 1674 aa18.66■□□□□ 0.58
USP28-205ENST00000537706 SMARCA4P51532 1647 aa18.65■□□□□ 0.58
USP28-205ENST00000537706 MRC2Q9UBG0 1479 aa18.64■□□□□ 0.57
USP28-205ENST00000537706 AEBP2Q6ZN18 517 aaPredicted RBP18.6■□□□□ 0.57
USP28-205ENST00000537706 WDR62O43379 1518 aa18.56■□□□□ 0.56
USP28-205ENST00000537706 CADPSQ9ULU8 1353 aa18.52■□□□□ 0.55
USP28-205ENST00000537706 PEG3Q9GZU2 1588 aa18.47■□□□□ 0.55
USP28-205ENST00000537706 TRHP20396 242 aaPredicted RBP18.47■□□□□ 0.55
USP28-205ENST00000537706 RIMBP3CA6NJZ7 1639 aa18.44■□□□□ 0.54
USP28-205ENST00000537706 RIMBP3BA6NNM3 1639 aa18.44■□□□□ 0.54
USP28-205ENST00000537706 RIMBP3Q9UFD9 1639 aa18.44■□□□□ 0.54
USP28-205ENST00000537706 CEP164Q9UPV0 1460 aa18.41■□□□□ 0.54
USP28-205ENST00000537706 ARHGEF11O15085 1522 aa18.34■□□□□ 0.53
USP28-205ENST00000537706 CYB5RLQ6IPT4 315 aa18.33■□□□□ 0.52
USP28-205ENST00000537706 FANCD2Q9BXW9 1451 aa18.29■□□□□ 0.52
USP28-205ENST00000537706 MROH2BQ7Z745 1585 aa18.22■□□□□ 0.51
USP28-205ENST00000537706 URB2Q14146 1524 aaKnown RBP18.12■□□□□ 0.49
USP28-205ENST00000537706 CFTRP13569 1480 aa18.09■□□□□ 0.49
USP28-205ENST00000537706 ARAP1Q96P48 1450 aa18.09■□□□□ 0.49
USP28-205ENST00000537706 IFT140Q96RY7 1462 aa18.09■□□□□ 0.49
USP28-205ENST00000537706 RSF1Q96T23 1441 aaPredicted RBP18.04■□□□□ 0.48
USP28-205ENST00000537706 ZNF608Q9ULD9 1512 aaPredicted RBP18.02■□□□□ 0.48
USP28-205ENST00000537706 FBLN2P98095 1184 aa17.96■□□□□ 0.47
USP28-205ENST00000537706 WIZO95785 1651 aa17.93■□□□□ 0.46
USP28-205ENST00000537706 EIF4G3O43432 1585 aaKnown RBP17.89■□□□□ 0.45
USP28-205ENST00000537706 CHD1O14646 1710 aa17.86■□□□□ 0.45
USP28-205ENST00000537706 ABCC8Q09428 1581 aa17.84■□□□□ 0.45
USP28-205ENST00000537706 TOPBP1Q92547 1522 aa17.83■□□□□ 0.44
USP28-205ENST00000537706 AQRO60306 1485 aaKnown RBP eCLIP17.8■□□□□ 0.446e-6■■■■□ 25.1
USP28-205ENST00000537706 ILDR1Q86SU0 546 aaPredicted RBP17.76■□□□□ 0.43
USP28-205ENST00000537706 TOP2AP11388 1531 aaKnown RBP17.74■□□□□ 0.43
USP28-205ENST00000537706 PRDM2Q13029 1718 aa17.74■□□□□ 0.43
USP28-205ENST00000537706 CHMP7Q8WUX9 453 aaPredicted RBP17.71■□□□□ 0.43
USP28-205ENST00000537706 SYNJ1O43426 1573 aa17.7■□□□□ 0.42
USP28-205ENST00000537706 DNMBPQ6XZF7 1577 aa17.7■□□□□ 0.42
USP28-205ENST00000537706 CLASP1Q7Z460 1538 aa17.69■□□□□ 0.42
USP28-205ENST00000537706 TARBP1Q13395 1621 aaKnown RBP17.65■□□□□ 0.42
USP28-205ENST00000537706 GAPVD1Q14C86 1478 aa17.64■□□□□ 0.41
USP28-205ENST00000537706 SNAPC4Q5SXM2 1469 aa17.62■□□□□ 0.41
USP28-205ENST00000537706 TDRD9Q8NDG6 1382 aaKnown RBP17.59■□□□□ 0.41
USP28-205ENST00000537706 POLA1P09884 1462 aaPredicted RBP17.58■□□□□ 0.4
USP28-205ENST00000537706 MAGI1Q96QZ7 1491 aaPredicted RBP17.58■□□□□ 0.4
USP28-205ENST00000537706 SOGA1O94964 1423 aa17.56■□□□□ 0.4
USP28-205ENST00000537706 WDR97A6NE52 1622 aa17.54■□□□□ 0.4
USP28-205ENST00000537706 CCDC88BA6NC98 1476 aa17.53■□□□□ 0.4
USP28-205ENST00000537706 SYNJ2O15056 1496 aa17.52■□□□□ 0.4
USP28-205ENST00000537706 RAD54L2Q9Y4B4 1467 aa17.52■□□□□ 0.4
USP28-205ENST00000537706 GRIN2BQ13224 1484 aa17.5■□□□□ 0.39
USP28-205ENST00000537706 KDM4FA0A1W2PPD8 638 aa17.42■□□□□ 0.38
USP28-205ENST00000537706 FGD5Q6ZNL6 1462 aa17.36■□□□□ 0.37
USP28-205ENST00000537706 FAM69CQ0P6D2 419 aa17.35■□□□□ 0.37
USP28-205ENST00000537706 NPM1P06748 294 aaKnown RBP eCLIP17.33■□□□□ 0.36
USP28-205ENST00000537706 KIF13AQ9H1H9 1805 aa17.3■□□□□ 0.36
USP28-205ENST00000537706 ERCC6L2Q5T890 1561 aa17.29■□□□□ 0.36
USP28-205ENST00000537706 CEP170Q5SW79 1584 aa17.27■□□□□ 0.36
USP28-205ENST00000537706 ABCC10Q5T3U5 1492 aa17.27■□□□□ 0.35
USP28-205ENST00000537706 KDM6BO15054 1643 aa17.26■□□□□ 0.35
USP28-205ENST00000537706 PBRM1Q86U86 1689 aa17.25■□□□□ 0.35
USP28-205ENST00000537706 GRIN2AQ12879 1464 aa17.23■□□□□ 0.35
USP28-205ENST00000537706 NUP160Q12769 1436 aa17.2■□□□□ 0.34
USP28-205ENST00000537706 CUX1P39880 1505 aa17.18■□□□□ 0.34
USP28-205ENST00000537706 FBXO41Q8TF61 875 aa17.16■□□□□ 0.34
USP28-205ENST00000537706 MAPKBP1O60336 1514 aa17.15■□□□□ 0.34
USP28-205ENST00000537706 SHROOM2Q13796 1616 aa17.15■□□□□ 0.34
USP28-205ENST00000537706 ABCA10Q8WWZ4 1543 aa17.14■□□□□ 0.33
USP28-205ENST00000537706 PRG4Q92954 1404 aaPredicted RBP17.14■□□□□ 0.33
USP28-205ENST00000537706 DIP2BQ9P265 1576 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms