RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 CENPJQ9HC77 1338 aaPredicted RBP22.64■■□□□ 1.21
SFSWAP-203ENST00000535236 RSPH4AQ5TD94 716 aa22.64■■□□□ 1.21
SFSWAP-203ENST00000535236 MARCH6O60337 910 aa22.62■■□□□ 1.21
SFSWAP-203ENST00000535236 NOL8Q76FK4 1167 aaKnown RBP22.62■■□□□ 1.21
SFSWAP-203ENST00000535236 VPS53Q5VIR6 699 aa22.61■■□□□ 1.21
SFSWAP-203ENST00000535236 CREBRFQ8IUR6 639 aa22.6■■□□□ 1.21
SFSWAP-203ENST00000535236 DEKP35659 375 aaKnown RBP22.6■■□□□ 1.21
SFSWAP-203ENST00000535236 TRAK1Q9UPV9 953 aa22.6■■□□□ 1.21
SFSWAP-203ENST00000535236 RBM19Q9Y4C8 960 aaKnown RBP22.6■■□□□ 1.21
SFSWAP-203ENST00000535236 PDE4CQ08493 712 aa22.59■■□□□ 1.21
SFSWAP-203ENST00000535236 NLRP13Q86W25 1043 aa22.58■■□□□ 1.21
SFSWAP-203ENST00000535236 AMER1Q5JTC6 1135 aaPredicted RBP22.58■■□□□ 1.21
SFSWAP-203ENST00000535236 KIF3AQ9Y496 699 aa22.58■■□□□ 1.21
SFSWAP-203ENST00000535236 KIF16BQ96L93 1317 aa22.57■■□□□ 1.2
SFSWAP-203ENST00000535236 L3MBTL2Q969R5 705 aa22.56■■□□□ 1.2
SFSWAP-203ENST00000535236 C1orf141Q5JVX7 400 aa22.56■■□□□ 1.2
SFSWAP-203ENST00000535236 EVA1CP58658 441 aa22.55■■□□□ 1.2
SFSWAP-203ENST00000535236 CEP89Q96ST8 783 aa22.55■■□□□ 1.2
SFSWAP-203ENST00000535236 A0A0U1RQG5 324 aaPredicted RBP22.54■■□□□ 1.2
SFSWAP-203ENST00000535236 ST18O60284 1047 aa22.54■■□□□ 1.2
SFSWAP-203ENST00000535236 CCDC18Q5T9S5 1454 aa22.54■■□□□ 1.2
SFSWAP-203ENST00000535236 SF3A1Q15459 793 aaKnown RBP22.54■■□□□ 1.2
SFSWAP-203ENST00000535236 FOXD4L1Q9NU39 408 aa22.54■■□□□ 1.2
SFSWAP-203ENST00000535236 PDE3BQ13370 1112 aa22.53■■□□□ 1.2
SFSWAP-203ENST00000535236 CCDC88BA6NC98 1476 aa22.52■■□□□ 1.2
SFSWAP-203ENST00000535236 COG3Q96JB2 828 aa22.52■■□□□ 1.2
SFSWAP-203ENST00000535236 PHLDB1Q86UU1 1377 aa22.52■■□□□ 1.2
SFSWAP-203ENST00000535236 SMARCA2P51531 1590 aa22.51■■□□□ 1.19
SFSWAP-203ENST00000535236 MSH5O43196 834 aa22.5■■□□□ 1.19
SFSWAP-203ENST00000535236 GOLGA6L3A6NEY3 463 aa22.5■■□□□ 1.19
SFSWAP-203ENST00000535236 ABCC8Q09428 1581 aa22.5■■□□□ 1.19
SFSWAP-203ENST00000535236 RRP7AQ9Y3A4 280 aaKnown RBP22.49■■□□□ 1.19
SFSWAP-203ENST00000535236 TPM3P06753 285 aa22.49■■□□□ 1.19
SFSWAP-203ENST00000535236 GOLGA6L1Q8N7Z2 621 aa22.47■■□□□ 1.19
SFSWAP-203ENST00000535236 H3BQV1 296 aa22.47■■□□□ 1.19
SFSWAP-203ENST00000535236 PHF14O94880 888 aa22.47■■□□□ 1.19
SFSWAP-203ENST00000535236 TEFQ10587 303 aa22.47■■□□□ 1.19
SFSWAP-203ENST00000535236 IFFO2Q5TF58 517 aa22.47■■□□□ 1.19
SFSWAP-203ENST00000535236 RILPL2Q969X0 211 aa22.47■■□□□ 1.19
SFSWAP-203ENST00000535236 UACAQ9BZF9 1416 aa22.46■■□□□ 1.19
SFSWAP-203ENST00000535236 AKAP17AQ02040 695 aaKnown RBP22.46■■□□□ 1.19
SFSWAP-203ENST00000535236 TTC5Q8N0Z6 440 aa22.46■■□□□ 1.19
SFSWAP-203ENST00000535236 KIF15Q9NS87 1388 aa22.46■■□□□ 1.19
SFSWAP-203ENST00000535236 FHOD3Q2V2M9 1422 aa22.46■■□□□ 1.19
SFSWAP-203ENST00000535236 ELL2O00472 640 aaPredicted RBP22.45■■□□□ 1.19
SFSWAP-203ENST00000535236 CHMP4CQ96CF2 233 aa22.45■■□□□ 1.18
SFSWAP-203ENST00000535236 VGFO15240 615 aaPredicted RBP22.45■■□□□ 1.18
SFSWAP-203ENST00000535236 CCDC144AA2RUR9 1427 aa22.45■■□□□ 1.18
SFSWAP-203ENST00000535236 JPH4Q96JJ6 628 aa22.44■■□□□ 1.18
SFSWAP-203ENST00000535236 PES1O00541 588 aaKnown RBP22.44■■□□□ 1.18
SFSWAP-203ENST00000535236 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.44■■□□□ 1.18
SFSWAP-203ENST00000535236 NOL10Q9BSC4 688 aaKnown RBP22.44■■□□□ 1.18
SFSWAP-203ENST00000535236 FOXD4L5Q5VV16 416 aaPredicted RBP22.43■■□□□ 1.18
SFSWAP-203ENST00000535236 FOXD4L4Q8WXT5 416 aaPredicted RBP22.43■■□□□ 1.18
SFSWAP-203ENST00000535236 ARID3AQ99856 593 aa22.43■■□□□ 1.18
SFSWAP-203ENST00000535236 EVC2Q86UK5 1308 aa22.43■■□□□ 1.18
SFSWAP-203ENST00000535236 TPD52L1Q16890 204 aaPredicted RBP22.43■■□□□ 1.18
SFSWAP-203ENST00000535236 FAM184AQ8NB25 1140 aa22.43■■□□□ 1.18
SFSWAP-203ENST00000535236 NEXNQ0ZGT2 675 aa22.43■■□□□ 1.18
SFSWAP-203ENST00000535236 CGNL1Q0VF96 1302 aa22.43■■□□□ 1.18
SFSWAP-203ENST00000535236 PANK3Q9H999 370 aa22.42■■□□□ 1.18
SFSWAP-203ENST00000535236 AMOTL1Q8IY63 956 aa22.42■■□□□ 1.18
SFSWAP-203ENST00000535236 MYBBP1AQ9BQG0 1328 aaKnown RBP22.42■■□□□ 1.18
SFSWAP-203ENST00000535236 SYNE3Q6ZMZ3 975 aa22.42■■□□□ 1.18
SFSWAP-203ENST00000535236 TRIM34Q9BYJ4 488 aa22.41■■□□□ 1.18
SFSWAP-203ENST00000535236 RAPGEF2Q9Y4G8 1499 aa22.41■■□□□ 1.18
SFSWAP-203ENST00000535236 LRRFIP1Q32MZ4 808 aaKnown RBP22.41■■□□□ 1.18
SFSWAP-203ENST00000535236 NGEFQ8N5V2 710 aa22.4■■□□□ 1.18
SFSWAP-203ENST00000535236 ANKRD45Q5TZF3 282 aa22.39■■□□□ 1.18
SFSWAP-203ENST00000535236 CTDP1Q9Y5B0 961 aaPredicted RBP22.39■■□□□ 1.17
SFSWAP-203ENST00000535236 ST20-MTHFSA0A0A6YYL1 179 aa22.39■■□□□ 1.17
SFSWAP-203ENST00000535236 USP35Q9P2H5 1018 aa22.38■■□□□ 1.17
SFSWAP-203ENST00000535236 TCEAL9Q9UHQ7 104 aa22.38■■□□□ 1.17
SFSWAP-203ENST00000535236 IPO9Q96P70 1041 aaKnown RBP22.38■■□□□ 1.17
SFSWAP-203ENST00000535236 RAD21O60216 631 aa22.37■■□□□ 1.17
SFSWAP-203ENST00000535236 TSR1Q2NL82 804 aaKnown RBP22.37■■□□□ 1.17
SFSWAP-203ENST00000535236 EIF2S2P20042 333 aaKnown RBP22.37■■□□□ 1.17
SFSWAP-203ENST00000535236 ZKSCAN2Q63HK3 967 aa22.37■■□□□ 1.17
SFSWAP-203ENST00000535236 DIAPH3Q9NSV4 1193 aa22.37■■□□□ 1.17
SFSWAP-203ENST00000535236 MINK1Q8N4C8 1332 aaPredicted RBP22.37■■□□□ 1.17
SFSWAP-203ENST00000535236 BCL2L13Q9BXK5 485 aa22.36■■□□□ 1.17
SFSWAP-203ENST00000535236 C9orf78Q9NZ63 289 aaPredicted RBP22.36■■□□□ 1.17
SFSWAP-203ENST00000535236 TPM2P07951 284 aa22.35■■□□□ 1.17
SFSWAP-203ENST00000535236 MEX3CQ5U5Q3 659 aaKnown RBP22.35■■□□□ 1.17
SFSWAP-203ENST00000535236 ATP6V1DQ9Y5K8 247 aa22.34■■□□□ 1.17
SFSWAP-203ENST00000535236 MROH2BQ7Z745 1585 aa22.34■■□□□ 1.17
SFSWAP-203ENST00000535236 CPLX2Q6PUV4 134 aaKnown RBP22.34■■□□□ 1.17
SFSWAP-203ENST00000535236 E9PSI1 815 aa22.34■■□□□ 1.17
SFSWAP-203ENST00000535236 SYTL4Q96C24 671 aaPredicted RBP22.33■■□□□ 1.17
SFSWAP-203ENST00000535236 DDX11L8A8MPP1 907 aa22.32■■□□□ 1.16
SFSWAP-203ENST00000535236 ANO8Q9HCE9 1232 aaPredicted RBP22.32■■□□□ 1.16
SFSWAP-203ENST00000535236 RUFY2Q8WXA3 655 aa22.32■■□□□ 1.16
SFSWAP-203ENST00000535236 PSME1Q06323 249 aa22.31■■□□□ 1.16
SFSWAP-203ENST00000535236 MCTP1Q6DN14 999 aa22.31■■□□□ 1.16
SFSWAP-203ENST00000535236 CENPQQ7L2Z9 268 aaPredicted RBP22.31■■□□□ 1.16
SFSWAP-203ENST00000535236 VPS37DQ86XT2 251 aa22.31■■□□□ 1.16
SFSWAP-203ENST00000535236 TRIM29Q14134 588 aa22.31■■□□□ 1.16
SFSWAP-203ENST00000535236 GOLGA6L19H0YKK7 550 aa22.3■■□□□ 1.16
SFSWAP-203ENST00000535236 TPM1P09493 284 aa22.3■■□□□ 1.16
SFSWAP-203ENST00000535236 CYB5RLQ6IPT4 315 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms