RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 DCAF11Q8TEB1 546 aa26.14■■□□□ 1.78
VPS28-213ENST00000530983 PNISRQ8TF01 805 aaKnown RBP26.14■■□□□ 1.78
VPS28-213ENST00000530983 NUDCQ9Y266 331 aa26.14■■□□□ 1.77
VPS28-213ENST00000530983 RNF123Q5XPI4 1314 aa26.1■■□□□ 1.77
VPS28-213ENST00000530983 TRPM1Q7Z4N2 1603 aa26.09■■□□□ 1.77
VPS28-213ENST00000530983 TMC1Q8TDI8 760 aa26.08■■□□□ 1.77
VPS28-213ENST00000530983 SYCP2Q9BX26 1530 aa26.06■■□□□ 1.76
VPS28-213ENST00000530983 LRPPRCP42704 1394 aaKnown RBP26.06■■□□□ 1.76
VPS28-213ENST00000530983 UNC13BO14795 1591 aa26.05■■□□□ 1.76
VPS28-213ENST00000530983 RSPH4AQ5TD94 716 aa26.05■■□□□ 1.76
VPS28-213ENST00000530983 CHD1O14646 1710 aa26.05■■□□□ 1.76
VPS28-213ENST00000530983 KTN1Q86UP2 1357 aaKnown RBP26.05■■□□□ 1.76
VPS28-213ENST00000530983 PRAG1Q86YV5 1406 aa26.04■■□□□ 1.76
VPS28-213ENST00000530983 TTC37Q6PGP7 1564 aa26.04■■□□□ 1.76
VPS28-213ENST00000530983 MAST1Q9Y2H9 1570 aa26.04■■□□□ 1.76
VPS28-213ENST00000530983 BRD4O60885 1362 aaPredicted RBP26.03■■□□□ 1.76
VPS28-213ENST00000530983 CCDC144AA2RUR9 1427 aa26.03■■□□□ 1.76
VPS28-213ENST00000530983 MYBBP1AQ9BQG0 1328 aaKnown RBP26.03■■□□□ 1.76
VPS28-213ENST00000530983 SENP3-EIF4A1A0A087X0R7 540 aa26.01■■□□□ 1.75
VPS28-213ENST00000530983 SHROOM2Q13796 1616 aa26.01■■□□□ 1.75
VPS28-213ENST00000530983 PLA2R1Q13018 1463 aa26.01■■□□□ 1.75
VPS28-213ENST00000530983 RALBP1Q15311 655 aa26■■□□□ 1.75
VPS28-213ENST00000530983 ARHGAP5Q13017 1502 aa25.99■■□□□ 1.75
VPS28-213ENST00000530983 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.99■■□□□ 1.757e-7■■□□□ 14.3
VPS28-213ENST00000530983 PLXNC1O60486 1568 aa25.97■■□□□ 1.75
VPS28-213ENST00000530983 IQGAP3Q86VI3 1631 aa25.96■■□□□ 1.75
VPS28-213ENST00000530983 A2MP01023 1474 aa25.96■■□□□ 1.75
VPS28-213ENST00000530983 GPRASP1Q5JY77 1395 aa25.95■■□□□ 1.74
VPS28-213ENST00000530983 MYO5CQ9NQX4 1742 aa25.95■■□□□ 1.74
VPS28-213ENST00000530983 LAMC1P11047 1609 aa25.94■■□□□ 1.74
VPS28-213ENST00000530983 NBPF1Q3BBV0 1214 aa25.93■■□□□ 1.74
VPS28-213ENST00000530983 PARD3Q8TEW0 1356 aa25.92■■□□□ 1.74
VPS28-213ENST00000530983 RGL3Q3MIN7 710 aa25.92■■□□□ 1.74
VPS28-213ENST00000530983 PRDM15P57071 1507 aaPredicted RBP25.91■■□□□ 1.74
VPS28-213ENST00000530983 PLEKHH2Q8IVE3 1493 aa25.9■■□□□ 1.74
VPS28-213ENST00000530983 ERICH6Q7L0X2 663 aa25.89■■□□□ 1.74
VPS28-213ENST00000530983 COL17A1Q9UMD9 1497 aaPredicted RBP25.89■■□□□ 1.74
VPS28-213ENST00000530983 CCDC136Q96JN2 1154 aa25.89■■□□□ 1.74
VPS28-213ENST00000530983 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.89■■□□□ 1.749e-9■■■□□ 15.1
VPS28-213ENST00000530983 PER1O15534 1290 aaPredicted RBP25.87■■□□□ 1.73
VPS28-213ENST00000530983 NLRP13Q86W25 1043 aa25.87■■□□□ 1.73
VPS28-213ENST00000530983 ABCC2Q92887 1545 aa25.87■■□□□ 1.73
VPS28-213ENST00000530983 MAGI2Q86UL8 1455 aa25.86■■□□□ 1.73
VPS28-213ENST00000530983 EIF2AK4Q9P2K8 1649 aaKnown RBP25.86■■□□□ 1.73
VPS28-213ENST00000530983 DUOX2Q9NRD8 1548 aa25.85■■□□□ 1.73
VPS28-213ENST00000530983 ATP10AO60312 1499 aa25.85■■□□□ 1.73
VPS28-213ENST00000530983 ERCC6L2Q5T890 1561 aa25.85■■□□□ 1.73
VPS28-213ENST00000530983 TESK2Q96S53 571 aa25.84■■□□□ 1.73
VPS28-213ENST00000530983 DISP3Q9P2K9 1392 aa25.84■■□□□ 1.73
VPS28-213ENST00000530983 ERBINQ96RT1 1412 aa25.81■■□□□ 1.72
VPS28-213ENST00000530983 RNF17Q9BXT8 1623 aaKnown RBP25.78■■□□□ 1.72
VPS28-213ENST00000530983 RRP1P56182 461 aaKnown RBP25.77■■□□□ 1.72
VPS28-213ENST00000530983 WASHC2CQ9Y4E1 1318 aa25.77■■□□□ 1.72
VPS28-213ENST00000530983 PLCH2O75038 1416 aa25.75■■□□□ 1.71
VPS28-213ENST00000530983 PDE3BQ13370 1112 aa25.74■■□□□ 1.71
VPS28-213ENST00000530983 RCAN3Q9UKA8 241 aa25.74■■□□□ 1.71
VPS28-213ENST00000530983 SALL2Q9Y467 1007 aaPredicted RBP25.74■■□□□ 1.71
VPS28-213ENST00000530983 ABCC1P33527 1531 aa25.73■■□□□ 1.71
VPS28-213ENST00000530983 CC2D1BQ5T0F9 858 aaKnown RBP25.72■■□□□ 1.71
VPS28-213ENST00000530983 ZCCHC11Q5TAX3 1644 aaKnown RBP25.72■■□□□ 1.71
VPS28-213ENST00000530983 PANK3Q9H999 370 aa25.72■■□□□ 1.71
VPS28-213ENST00000530983 MYT1LQ9UL68 1186 aa25.72■■□□□ 1.71
VPS28-213ENST00000530983 ZMYM4Q5VZL5 1548 aa25.71■■□□□ 1.71
VPS28-213ENST00000530983 BLMP54132 1417 aaPredicted RBP25.71■■□□□ 1.71
VPS28-213ENST00000530983 TMF1P82094 1093 aa25.7■■□□□ 1.71
VPS28-213ENST00000530983 UHRF1BP1LA0JNW5 1464 aa25.7■■□□□ 1.7
VPS28-213ENST00000530983 INSRP06213 1382 aa25.7■■□□□ 1.7
VPS28-213ENST00000530983 CLASP1Q7Z460 1538 aa25.7■■□□□ 1.7
VPS28-213ENST00000530983 EXOC6Q8TAG9 804 aa25.69■■□□□ 1.7
VPS28-213ENST00000530983 MADDQ8WXG6 1647 aa25.68■■□□□ 1.7
VPS28-213ENST00000530983 TRAPPC8Q9Y2L5 1435 aa25.68■■□□□ 1.7
VPS28-213ENST00000530983 EFCAB2Q5VUJ9 269 aa25.66■■□□□ 1.7
VPS28-213ENST00000530983 CDCA7LQ96GN5 454 aa25.66■■□□□ 1.7
VPS28-213ENST00000530983 IQGAP1P46940 1657 aa25.66■■□□□ 1.7
VPS28-213ENST00000530983 NOP58Q9Y2X3 529 aaKnown RBP25.65■■□□□ 1.7
VPS28-213ENST00000530983 WDR7Q9Y4E6 1490 aa25.63■■□□□ 1.69
VPS28-213ENST00000530983 SPHKAPQ2M3C7 1700 aa25.62■■□□□ 1.69
VPS28-213ENST00000530983 TRPM2O94759 1503 aa25.62■■□□□ 1.69
VPS28-213ENST00000530983 DEKP35659 375 aaKnown RBP25.62■■□□□ 1.69
VPS28-213ENST00000530983 CEP152O94986 1710 aa25.61■■□□□ 1.69
VPS28-213ENST00000530983 PAK3O75914 559 aaPredicted RBP25.6■■□□□ 1.69
VPS28-213ENST00000530983 ZFYVE16Q7Z3T8 1539 aa25.58■■□□□ 1.69
VPS28-213ENST00000530983 ANP32AP39687 249 aaKnown RBP25.57■■□□□ 1.68
VPS28-213ENST00000530983 DEPDC5O75140 1603 aa25.57■■□□□ 1.68
VPS28-213ENST00000530983 CLTCL1P53675 1640 aa25.56■■□□□ 1.68
VPS28-213ENST00000530983 RTEL1-TNFRSF6BF6WH68 1400 aa25.56■■□□□ 1.68
VPS28-213ENST00000530983 IPO9Q96P70 1041 aaKnown RBP25.55■■□□□ 1.68
VPS28-213ENST00000530983 SPAG9O60271 1321 aaKnown RBP25.55■■□□□ 1.68
VPS28-213ENST00000530983 PTPRTO14522 1441 aa25.55■■□□□ 1.68
VPS28-213ENST00000530983 ARAP3Q8WWN8 1544 aa25.55■■□□□ 1.68
VPS28-213ENST00000530983 SYNMO15061 1565 aa25.54■■□□□ 1.68
VPS28-213ENST00000530983 AFAP1Q8N556 730 aa25.52■■□□□ 1.68
VPS28-213ENST00000530983 SCAF11Q99590 1463 aaKnown RBP25.52■■□□□ 1.68
VPS28-213ENST00000530983 SCAPERQ9BY12 1400 aa25.52■■□□□ 1.68
VPS28-213ENST00000530983 TET3O43151 1660 aa25.51■■□□□ 1.67
VPS28-213ENST00000530983 ADAMTS8Q9UP79 889 aa25.51■■□□□ 1.67
VPS28-213ENST00000530983 TCERG1O14776 1098 aaKnown RBP25.51■■□□□ 1.67
VPS28-213ENST00000530983 PLIN1O60240 522 aa25.51■■□□□ 1.67
VPS28-213ENST00000530983 MYOM1P52179 1685 aa25.5■■□□□ 1.67
VPS28-213ENST00000530983 KNSTRNQ9Y448 316 aa25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms