RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 CLTCQ00610 1675 aaKnown RBP20.39■□□□□ 0.86
VPS28-210ENST00000529182 EIF2AK4Q9P2K8 1649 aaKnown RBP20.39■□□□□ 0.86
VPS28-210ENST00000529182 ERBINQ96RT1 1412 aa20.39■□□□□ 0.85
VPS28-210ENST00000529182 C3P01024 1663 aa20.38■□□□□ 0.85
VPS28-210ENST00000529182 ZMYM3Q14202 1370 aa20.37■□□□□ 0.85
VPS28-210ENST00000529182 PPP6R1Q9UPN7 881 aa20.37■□□□□ 0.85
VPS28-210ENST00000529182 RNF17Q9BXT8 1623 aaKnown RBP20.37■□□□□ 0.85
VPS28-210ENST00000529182 MROH1Q8NDA8 1641 aa20.35■□□□□ 0.85
VPS28-210ENST00000529182 WASHC2CQ9Y4E1 1318 aa20.35■□□□□ 0.85
VPS28-210ENST00000529182 ROCK1Q13464 1354 aa20.34■□□□□ 0.85
VPS28-210ENST00000529182 KDM5DQ9BY66 1539 aa20.34■□□□□ 0.85
VPS28-210ENST00000529182 MROH2AA6NES4 1674 aa20.34■□□□□ 0.85
VPS28-210ENST00000529182 ANKRD50Q9ULJ7 1429 aa20.33■□□□□ 0.84
VPS28-210ENST00000529182 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.32■□□□□ 0.849e-9■■■□□ 15.1
VPS28-210ENST00000529182 ABCC3O15438 1527 aa20.3■□□□□ 0.84
VPS28-210ENST00000529182 PRDM15P57071 1507 aaPredicted RBP20.29■□□□□ 0.84
VPS28-210ENST00000529182 FAM135AQ9P2D6 1515 aa20.29■□□□□ 0.84
VPS28-210ENST00000529182 LMTK3Q96Q04 1460 aa20.29■□□□□ 0.84
VPS28-210ENST00000529182 DEPDC5O75140 1603 aa20.28■□□□□ 0.84
VPS28-210ENST00000529182 CEP152O94986 1710 aa20.27■□□□□ 0.83
VPS28-210ENST00000529182 FBXO31Q5XUX0 539 aaPredicted RBP20.26■□□□□ 0.83
VPS28-210ENST00000529182 NPATQ14207 1427 aa20.25■□□□□ 0.83
VPS28-210ENST00000529182 ZC3H13Q5T200 1668 aaKnown RBP20.25■□□□□ 0.83
VPS28-210ENST00000529182 PREX1Q8TCU6 1659 aa20.24■□□□□ 0.83
VPS28-210ENST00000529182 HSPA2P54652 639 aa20.24■□□□□ 0.83
VPS28-210ENST00000529182 PZPP20742 1482 aa20.24■□□□□ 0.83
VPS28-210ENST00000529182 KANK1Q14678 1352 aa20.23■□□□□ 0.83
VPS28-210ENST00000529182 UHRF1BP1Q6BDS2 1440 aa20.23■□□□□ 0.83
VPS28-210ENST00000529182 VWDEQ8N2E2 1590 aa20.21■□□□□ 0.83
VPS28-210ENST00000529182 CAMSAP1Q5T5Y3 1602 aa20.21■□□□□ 0.83
VPS28-210ENST00000529182 SETD1BQ9UPS6 1966 aaKnown RBP20.21■□□□□ 0.83
VPS28-210ENST00000529182 NAIPQ13075 1403 aa20.2■□□□□ 0.82
VPS28-210ENST00000529182 UNC13BO14795 1591 aa20.19■□□□□ 0.82
VPS28-210ENST00000529182 LMTK2Q8IWU2 1503 aa20.17■□□□□ 0.82
VPS28-210ENST00000529182 TNRQ92752 1358 aa20.17■□□□□ 0.82
VPS28-210ENST00000529182 HFM1A2PYH4 1435 aa20.17■□□□□ 0.82
VPS28-210ENST00000529182 MYO3AQ8NEV4 1616 aa20.16■□□□□ 0.82
VPS28-210ENST00000529182 GCC2Q8IWJ2 1684 aa20.16■□□□□ 0.82
VPS28-210ENST00000529182 ARHGAP31Q2M1Z3 1444 aa20.15■□□□□ 0.82
VPS28-210ENST00000529182 ERVK-7P63135 1459 aa20.15■□□□□ 0.82
VPS28-210ENST00000529182 NUP155O75694 1391 aa20.14■□□□□ 0.81
VPS28-210ENST00000529182 SPATA31D1Q6ZQQ2 1576 aa20.13■□□□□ 0.81
VPS28-210ENST00000529182 EFCAB6Q5THR3 1501 aa20.12■□□□□ 0.81
VPS28-210ENST00000529182 CFAP65Q6ZU64 1925 aaKnown RBP20.12■□□□□ 0.81
VPS28-210ENST00000529182 CEP170BQ9Y4F5 1589 aaPredicted RBP20.12■□□□□ 0.81
VPS28-210ENST00000529182 ZNF142P52746 1687 aaPredicted RBP20.1■□□□□ 0.81
VPS28-210ENST00000529182 IQGAP3Q86VI3 1631 aa20.09■□□□□ 0.81
VPS28-210ENST00000529182 A2ML1A8K2U0 1454 aa20.09■□□□□ 0.81
VPS28-210ENST00000529182 TET3O43151 1660 aa20.09■□□□□ 0.81
VPS28-210ENST00000529182 NLRP1Q9C000 1473 aa20.06■□□□□ 0.8
VPS28-210ENST00000529182 TRIM52Q96A61 297 aa20.05■□□□□ 0.8
VPS28-210ENST00000529182 NOS1P29475 1434 aa20.04■□□□□ 0.8
VPS28-210ENST00000529182 SYNMO15061 1565 aa20.04■□□□□ 0.8
VPS28-210ENST00000529182 E9PCH4 1651 aa20.03■□□□□ 0.8
VPS28-210ENST00000529182 RPRD2Q5VT52 1461 aaKnown RBP20.03■□□□□ 0.8
VPS28-210ENST00000529182 UGGT1Q9NYU2 1555 aa20.02■□□□□ 0.8
VPS28-210ENST00000529182 SETD5Q9C0A6 1442 aa20.02■□□□□ 0.79
VPS28-210ENST00000529182 STRCQ7RTU9 1775 aa20.01■□□□□ 0.79
VPS28-210ENST00000529182 NCKAP5LQ9HCH0 1330 aa20■□□□□ 0.79
VPS28-210ENST00000529182 IDI1Q13907 227 aa19.99■□□□□ 0.79
VPS28-210ENST00000529182 PLA2R1Q13018 1463 aa19.98■□□□□ 0.79
VPS28-210ENST00000529182 PIK3C2BO00750 1634 aa19.98■□□□□ 0.79
VPS28-210ENST00000529182 THEMISQ8N1K5 641 aaPredicted RBP19.97■□□□□ 0.79
VPS28-210ENST00000529182 RAB3GAP2Q9H2M9 1393 aa19.96■□□□□ 0.79
VPS28-210ENST00000529182 SLC4A1APQ9BWU0 796 aaKnown RBP19.96■□□□□ 0.79
VPS28-210ENST00000529182 UBR1Q8IWV7 1749 aa19.96■□□□□ 0.79
VPS28-210ENST00000529182 PKD2Q13563 968 aa19.95■□□□□ 0.78
VPS28-210ENST00000529182 SLC52A1Q9NWF4 448 aa19.94■□□□□ 0.78
VPS28-210ENST00000529182 STAG3Q9UJ98 1225 aa19.94■□□□□ 0.78
VPS28-210ENST00000529182 DMRT2Q9Y5R5 561 aa19.91■□□□□ 0.78
VPS28-210ENST00000529182 FOXD1Q16676 465 aa19.9■□□□□ 0.78
VPS28-210ENST00000529182 ANKLE2Q86XL3 938 aa19.9■□□□□ 0.78
VPS28-210ENST00000529182 PTPRTO14522 1441 aa19.9■□□□□ 0.78
VPS28-210ENST00000529182 ADGRB3O60242 1522 aa19.9■□□□□ 0.78
VPS28-210ENST00000529182 SPHKAPQ2M3C7 1700 aa19.89■□□□□ 0.77
VPS28-210ENST00000529182 MPHOSPH9Q99550 1183 aa19.89■□□□□ 0.77
VPS28-210ENST00000529182 NEURL4Q96JN8 1562 aa19.88■□□□□ 0.77
VPS28-210ENST00000529182 CHGAP10645 457 aaKnown RBP19.88■□□□□ 0.77
VPS28-210ENST00000529182 TMEM2Q9UHN6 1383 aa19.87■□□□□ 0.77
VPS28-210ENST00000529182 LTKP29376 864 aa19.87■□□□□ 0.77
VPS28-210ENST00000529182 POLR1AO95602 1720 aaPredicted RBP19.87■□□□□ 0.77
VPS28-210ENST00000529182 SLIT1O75093 1534 aa19.86■□□□□ 0.77
VPS28-210ENST00000529182 ARHGAP23Q9P227 1491 aa19.86■□□□□ 0.77
VPS28-210ENST00000529182 KDM5AP29375 1690 aaKnown RBP19.85■□□□□ 0.77
VPS28-210ENST00000529182 TXNDC2Q86VQ3 553 aa19.85■□□□□ 0.77
VPS28-210ENST00000529182 TRPM2O94759 1503 aa19.85■□□□□ 0.77
VPS28-210ENST00000529182 TMEM131LA2VDJ0 1609 aa19.84■□□□□ 0.77
VPS28-210ENST00000529182 SCAF11Q99590 1463 aaKnown RBP19.83■□□□□ 0.76
VPS28-210ENST00000529182 NPHP4O75161 1426 aaPredicted RBP19.83■□□□□ 0.76
VPS28-210ENST00000529182 CLTCL1P53675 1640 aa19.83■□□□□ 0.76
VPS28-210ENST00000529182 MYO5BQ9ULV0 1848 aa19.83■□□□□ 0.76
VPS28-210ENST00000529182 ACIN1Q9UKV3 1341 aaKnown RBP19.82■□□□□ 0.76
VPS28-210ENST00000529182 MED14O60244 1454 aa19.82■□□□□ 0.76
VPS28-210ENST00000529182 HRCP23327 699 aa19.81■□□□□ 0.76
VPS28-210ENST00000529182 EID1Q9Y6B2 187 aa19.81■□□□□ 0.76
VPS28-210ENST00000529182 RIMS2Q9UQ26 1411 aa19.79■□□□□ 0.76
VPS28-210ENST00000529182 TRIM26Q12899 539 aaPredicted RBP19.79■□□□□ 0.76
VPS28-210ENST00000529182 SENP3Q9H4L4 574 aaPredicted RBP19.79■□□□□ 0.76
VPS28-210ENST00000529182 ZNF335Q9H4Z2 1342 aaPredicted RBP19.78■□□□□ 0.76
VPS28-210ENST00000529182 ZFYVE9O95405 1425 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms