RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 DAXXQ9UER7 740 aaPredicted RBP11.16□□□□□ -0.62
CSMD1-213ENST00000523488 GPRASP1Q5JY77 1395 aa11.15□□□□□ -0.62
CSMD1-213ENST00000523488 KIAA1210Q9ULL0 1709 aa11.15□□□□□ -0.63
CSMD1-213ENST00000523488 YEATS2Q9ULM3 1422 aa11.14□□□□□ -0.63
CSMD1-213ENST00000523488 FSD2A1L4K1 749 aa11.14□□□□□ -0.63
CSMD1-213ENST00000523488 ARHGEF5Q12774 1597 aa11.14□□□□□ -0.63
CSMD1-213ENST00000523488 MAST1Q9Y2H9 1570 aa11.14□□□□□ -0.63
CSMD1-213ENST00000523488 ADAMTS12P58397 1594 aa11.13□□□□□ -0.63
CSMD1-213ENST00000523488 COL17A1Q9UMD9 1497 aaPredicted RBP11.12□□□□□ -0.63
CSMD1-213ENST00000523488 ABCC5O15440 1437 aa11.12□□□□□ -0.63
CSMD1-213ENST00000523488 NFKBIBQ15653 356 aa11.12□□□□□ -0.63
CSMD1-213ENST00000523488 SYNJ2O15056 1496 aa11.12□□□□□ -0.63
CSMD1-213ENST00000523488 KIAA0586Q9BVV6 1533 aa11.12□□□□□ -0.63
CSMD1-213ENST00000523488 KIF15Q9NS87 1388 aa11.12□□□□□ -0.63
CSMD1-213ENST00000523488 CADPSQ9ULU8 1353 aa11.11□□□□□ -0.63
CSMD1-213ENST00000523488 SYNMO15061 1565 aa11.11□□□□□ -0.63
CSMD1-213ENST00000523488 NCOA3Q9Y6Q9 1424 aa11.11□□□□□ -0.63
CSMD1-213ENST00000523488 NBPF8Q3BBV2 869 aa11.11□□□□□ -0.63
CSMD1-213ENST00000523488 DCAF11Q8TEB1 546 aa11.11□□□□□ -0.63
CSMD1-213ENST00000523488 RTEL1-TNFRSF6BF6WH68 1400 aa11.1□□□□□ -0.63
CSMD1-213ENST00000523488 USP19O94966 1318 aa11.1□□□□□ -0.63
CSMD1-213ENST00000523488 KIAA1107Q9UPP5 1409 aa11.1□□□□□ -0.63
CSMD1-213ENST00000523488 VSIG10Q8N0Z9 540 aa11.1□□□□□ -0.63
CSMD1-213ENST00000523488 RRP9O43818 475 aaKnown RBP11.1□□□□□ -0.63
CSMD1-213ENST00000523488 ZNF521Q96K83 1311 aa11.09□□□□□ -0.63
CSMD1-213ENST00000523488 C8orf34Q49A92 452 aa11.09□□□□□ -0.63
CSMD1-213ENST00000523488 FRAT1Q92837 279 aaPredicted RBP11.09□□□□□ -0.63
CSMD1-213ENST00000523488 MYO3AQ8NEV4 1616 aa11.09□□□□□ -0.63
CSMD1-213ENST00000523488 SHPRHQ149N8 1683 aa11.09□□□□□ -0.63
CSMD1-213ENST00000523488 ATP10AO60312 1499 aa11.09□□□□□ -0.63
CSMD1-213ENST00000523488 MAGI2Q86UL8 1455 aa11.09□□□□□ -0.63
CSMD1-213ENST00000523488 USP32Q8NFA0 1604 aa11.08□□□□□ -0.64
CSMD1-213ENST00000523488 CLCN1P35523 988 aa11.08□□□□□ -0.64
CSMD1-213ENST00000523488 EIF3AQ14152 1382 aaKnown RBP11.08□□□□□ -0.64
CSMD1-213ENST00000523488 MRS2Q9HD23 443 aa11.08□□□□□ -0.64
CSMD1-213ENST00000523488 KIAA0556O60303 1618 aa11.08□□□□□ -0.64
CSMD1-213ENST00000523488 IQGAP3Q86VI3 1631 aa11.08□□□□□ -0.64
CSMD1-213ENST00000523488 RAPGEF6Q8TEU7 1601 aa11.08□□□□□ -0.64
CSMD1-213ENST00000523488 FAM50AQ14320 339 aaKnown RBP11.07□□□□□ -0.64
CSMD1-213ENST00000523488 ANTXR1Q9H6X2 564 aa11.07□□□□□ -0.64
CSMD1-213ENST00000523488 PPRC1Q5VV67 1664 aaKnown RBP11.07□□□□□ -0.64
CSMD1-213ENST00000523488 SPHKAPQ2M3C7 1700 aa11.05□□□□□ -0.64
CSMD1-213ENST00000523488 MYBBP1AQ9BQG0 1328 aaKnown RBP11.05□□□□□ -0.64
CSMD1-213ENST00000523488 CLTCL1P53675 1640 aa11.05□□□□□ -0.64
CSMD1-213ENST00000523488 TRMT2AQ8IZ69 625 aaKnown RBP11.05□□□□□ -0.64
CSMD1-213ENST00000523488 L3MBTL2Q969R5 705 aa11.05□□□□□ -0.64
CSMD1-213ENST00000523488 ABCA6Q8N139 1617 aa11.04□□□□□ -0.64
CSMD1-213ENST00000523488 RRAGDQ9NQL2 400 aaPredicted RBP11.04□□□□□ -0.64
CSMD1-213ENST00000523488 NUP160Q12769 1436 aa11.04□□□□□ -0.64
CSMD1-213ENST00000523488 ZC3H13Q5T200 1668 aaKnown RBP11.04□□□□□ -0.64
CSMD1-213ENST00000523488 INO80Q9ULG1 1556 aaPredicted RBP11.03□□□□□ -0.64
CSMD1-213ENST00000523488 CEP152O94986 1710 aa11.03□□□□□ -0.64
CSMD1-213ENST00000523488 USP47Q96K76 1375 aa11.03□□□□□ -0.64
CSMD1-213ENST00000523488 RALBP1Q15311 655 aa11.03□□□□□ -0.64
CSMD1-213ENST00000523488 PODXL2Q9NZ53 605 aa11.03□□□□□ -0.64
CSMD1-213ENST00000523488 TERF1P54274 439 aa11.03□□□□□ -0.64
CSMD1-213ENST00000523488 CNGB1Q14028 1251 aaPredicted RBP11.03□□□□□ -0.64
CSMD1-213ENST00000523488 GRIN2AQ12879 1464 aa11.03□□□□□ -0.64
CSMD1-213ENST00000523488 REREQ9P2R6 1566 aa11.03□□□□□ -0.64
CSMD1-213ENST00000523488 MPHOSPH9Q99550 1183 aa11.02□□□□□ -0.64
CSMD1-213ENST00000523488 IFT172Q9UG01 1749 aa11.02□□□□□ -0.64
CSMD1-213ENST00000523488 FANCD2Q9BXW9 1451 aa11.02□□□□□ -0.65
CSMD1-213ENST00000523488 CCDC141Q6ZP82 1450 aa11.02□□□□□ -0.65
CSMD1-213ENST00000523488 P3H3Q8IVL6 736 aa11.01□□□□□ -0.65
CSMD1-213ENST00000523488 ZMYND15Q9H091 742 aa11.01□□□□□ -0.65
CSMD1-213ENST00000523488 ISY1Q9ULR0 285 aaKnown RBP11.01□□□□□ -0.65
CSMD1-213ENST00000523488 MTUS2Q5JR59 1369 aa11.01□□□□□ -0.65
CSMD1-213ENST00000523488 IBTKQ9P2D0 1353 aaPredicted RBP11.01□□□□□ -0.65
CSMD1-213ENST00000523488 NINLQ9Y2I6 1382 aa11.01□□□□□ -0.65
CSMD1-213ENST00000523488 MADDQ8WXG6 1647 aa11.01□□□□□ -0.65
CSMD1-213ENST00000523488 NPC1L1Q9UHC9 1359 aa11□□□□□ -0.65
CSMD1-213ENST00000523488 UHRF1BP1LA0JNW5 1464 aa11□□□□□ -0.65
CSMD1-213ENST00000523488 PRDM4Q9UKN5 801 aa11□□□□□ -0.65
CSMD1-213ENST00000523488 CDK13Q14004 1512 aaKnown RBP10.99□□□□□ -0.65
CSMD1-213ENST00000523488 URB2Q14146 1524 aaKnown RBP10.99□□□□□ -0.65
CSMD1-213ENST00000523488 DDIT3P35638 169 aa10.99□□□□□ -0.65
CSMD1-213ENST00000523488 DUOX2Q9NRD8 1548 aa10.99□□□□□ -0.65
CSMD1-213ENST00000523488 FAM135AQ9P2D6 1515 aa10.99□□□□□ -0.65
CSMD1-213ENST00000523488 PER1O15534 1290 aaPredicted RBP10.98□□□□□ -0.65
CSMD1-213ENST00000523488 EXOC6Q8TAG9 804 aa10.98□□□□□ -0.65
CSMD1-213ENST00000523488 CENPQQ7L2Z9 268 aaPredicted RBP10.98□□□□□ -0.65
CSMD1-213ENST00000523488 NAP1L5Q96NT1 182 aaPredicted RBP10.98□□□□□ -0.65
CSMD1-213ENST00000523488 PIK3C2GO75747 1445 aa10.98□□□□□ -0.65
CSMD1-213ENST00000523488 PRAG1Q86YV5 1406 aa10.98□□□□□ -0.65
CSMD1-213ENST00000523488 DISP1Q96F81 1524 aa10.97□□□□□ -0.65
CSMD1-213ENST00000523488 NUP153P49790 1475 aaKnown RBP10.97□□□□□ -0.65
CSMD1-213ENST00000523488 ADGRB2O60241 1585 aa10.97□□□□□ -0.65
CSMD1-213ENST00000523488 CALD1Q05682 793 aaKnown RBP10.97□□□□□ -0.65
CSMD1-213ENST00000523488 IQSEC2Q5JU85 1478 aa10.97□□□□□ -0.65
CSMD1-213ENST00000523488 RCAN3Q9UKA8 241 aa10.97□□□□□ -0.65
CSMD1-213ENST00000523488 ARID3CA6NKF2 412 aa10.96□□□□□ -0.65
CSMD1-213ENST00000523488 HSP90AA2PQ14568 343 aaPredicted RBP10.96□□□□□ -0.65
CSMD1-213ENST00000523488 FAM161AQ3B820 660 aa10.96□□□□□ -0.65
CSMD1-213ENST00000523488 WDR7Q9Y4E6 1490 aa10.96□□□□□ -0.66
CSMD1-213ENST00000523488 ABCA8O94911 1581 aa10.96□□□□□ -0.66
CSMD1-213ENST00000523488 RAD54L2Q9Y4B4 1467 aa10.95□□□□□ -0.66
CSMD1-213ENST00000523488 L1TD1Q5T7N2 865 aaKnown RBP10.95□□□□□ -0.66
CSMD1-213ENST00000523488 DEPDC5O75140 1603 aa10.94□□□□□ -0.66
CSMD1-213ENST00000523488 PREX2Q70Z35 1606 aa10.94□□□□□ -0.66
CSMD1-213ENST00000523488 SENP3-EIF4A1A0A087X0R7 540 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms