RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 RIMS1Q86UR5 1692 aaKnown RBP23.09■■□□□ 1.29
LSM1-203ENST00000520755 GGT6Q6P531 493 aa23.07■■□□□ 1.28
LSM1-203ENST00000520755 RNF17Q9BXT8 1623 aaKnown RBP23.07■■□□□ 1.28
LSM1-203ENST00000520755 DEPDC5O75140 1603 aa23.05■■□□□ 1.28
LSM1-203ENST00000520755 ANKRD50Q9ULJ7 1429 aa23.05■■□□□ 1.28
LSM1-203ENST00000520755 UNC13BO14795 1591 aa23.03■■□□□ 1.28
LSM1-203ENST00000520755 CLTCQ00610 1675 aaKnown RBP23.03■■□□□ 1.28
LSM1-203ENST00000520755 MROH1Q8NDA8 1641 aa23.02■■□□□ 1.28
LSM1-203ENST00000520755 SETD5Q9C0A6 1442 aa23.01■■□□□ 1.27
LSM1-203ENST00000520755 ESF1Q9H501 851 aaKnown RBP23.01■■□□□ 1.27
LSM1-203ENST00000520755 CEP152O94986 1710 aa22.98■■□□□ 1.27
LSM1-203ENST00000520755 RAB3GAP2Q9H2M9 1393 aa22.98■■□□□ 1.27
LSM1-203ENST00000520755 PRDM15P57071 1507 aaPredicted RBP22.98■■□□□ 1.27
LSM1-203ENST00000520755 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.97■■□□□ 1.278e-6■□□□□ 10.1
LSM1-203ENST00000520755 MROH2AA6NES4 1674 aa22.97■■□□□ 1.27
LSM1-203ENST00000520755 PTPRMP28827 1452 aa22.96■■□□□ 1.27
LSM1-203ENST00000520755 KDM5DQ9BY66 1539 aa22.96■■□□□ 1.27
LSM1-203ENST00000520755 ZC3H13Q5T200 1668 aaKnown RBP22.96■■□□□ 1.27
LSM1-203ENST00000520755 C3P01024 1663 aa22.95■■□□□ 1.26
LSM1-203ENST00000520755 PLPPR3Q6T4P5 718 aa22.95■■□□□ 1.26
LSM1-203ENST00000520755 CNTLNQ9NXG0 1405 aa22.94■■□□□ 1.26
LSM1-203ENST00000520755 PPP6R1Q9UPN7 881 aa22.94■■□□□ 1.26
LSM1-203ENST00000520755 FAM135AQ9P2D6 1515 aa22.93■■□□□ 1.26
LSM1-203ENST00000520755 WASHC2CQ9Y4E1 1318 aa22.93■■□□□ 1.26
LSM1-203ENST00000520755 IQGAP3Q86VI3 1631 aa22.93■■□□□ 1.26
LSM1-203ENST00000520755 ABCC3O15438 1527 aa22.92■■□□□ 1.26
LSM1-203ENST00000520755 KANK1Q14678 1352 aa22.91■■□□□ 1.26
LSM1-203ENST00000520755 VWDEQ8N2E2 1590 aa22.91■■□□□ 1.26
LSM1-203ENST00000520755 CAMSAP1Q5T5Y3 1602 aa22.9■■□□□ 1.26
LSM1-203ENST00000520755 CEBPAP49715 358 aaPredicted RBP22.88■■□□□ 1.25
LSM1-203ENST00000520755 ZMYM3Q14202 1370 aa22.88■■□□□ 1.25
LSM1-203ENST00000520755 AEBP2Q6ZN18 517 aaPredicted RBP22.87■■□□□ 1.25
LSM1-203ENST00000520755 CFAP65Q6ZU64 1925 aaKnown RBP22.84■■□□□ 1.25
LSM1-203ENST00000520755 PZPP20742 1482 aa22.84■■□□□ 1.25
LSM1-203ENST00000520755 NUP155O75694 1391 aa22.83■■□□□ 1.25
LSM1-203ENST00000520755 TET3O43151 1660 aa22.83■■□□□ 1.24
LSM1-203ENST00000520755 LMTK2Q8IWU2 1503 aa22.82■■□□□ 1.24
LSM1-203ENST00000520755 HRCP23327 699 aa22.8■■□□□ 1.24
LSM1-203ENST00000520755 TRIM52Q96A61 297 aa22.8■■□□□ 1.24
LSM1-203ENST00000520755 EFCAB6Q5THR3 1501 aa22.79■■□□□ 1.24
LSM1-203ENST00000520755 E9PCH4 1651 aa22.79■■□□□ 1.24
LSM1-203ENST00000520755 PREX1Q8TCU6 1659 aa22.76■■□□□ 1.23
LSM1-203ENST00000520755 NPATQ14207 1427 aa22.74■■□□□ 1.23
LSM1-203ENST00000520755 ARHGAP31Q2M1Z3 1444 aa22.74■■□□□ 1.23
LSM1-203ENST00000520755 SETD1BQ9UPS6 1966 aaKnown RBP22.74■■□□□ 1.23
LSM1-203ENST00000520755 FBXO31Q5XUX0 539 aaPredicted RBP22.74■■□□□ 1.23
LSM1-203ENST00000520755 DHX57Q6P158 1386 aaKnown RBP22.72■■□□□ 1.23
LSM1-203ENST00000520755 ERVK-7P63135 1459 aa22.72■■□□□ 1.23
LSM1-203ENST00000520755 SPATA31D1Q6ZQQ2 1576 aa22.71■■□□□ 1.23
LSM1-203ENST00000520755 MYO3AQ8NEV4 1616 aa22.71■■□□□ 1.23
LSM1-203ENST00000520755 SPHKAPQ2M3C7 1700 aa22.7■■□□□ 1.22
LSM1-203ENST00000520755 RPRD2Q5VT52 1461 aaKnown RBP22.69■■□□□ 1.22
LSM1-203ENST00000520755 TNRQ92752 1358 aa22.68■■□□□ 1.22
LSM1-203ENST00000520755 ACIN1Q9UKV3 1341 aaKnown RBP22.67■■□□□ 1.22
LSM1-203ENST00000520755 SLC4A1APQ9BWU0 796 aaKnown RBP22.67■■□□□ 1.22
LSM1-203ENST00000520755 UHRF1BP1Q6BDS2 1440 aa22.66■■□□□ 1.22
LSM1-203ENST00000520755 SYNMO15061 1565 aa22.64■■□□□ 1.22
LSM1-203ENST00000520755 ZNF142P52746 1687 aaPredicted RBP22.63■■□□□ 1.21
LSM1-203ENST00000520755 LMTK3Q96Q04 1460 aa22.63■■□□□ 1.21
LSM1-203ENST00000520755 MPHOSPH9Q99550 1183 aa22.63■■□□□ 1.21
LSM1-203ENST00000520755 PKD2Q13563 968 aa22.62■■□□□ 1.21
LSM1-203ENST00000520755 NOS1P29475 1434 aa22.62■■□□□ 1.21
LSM1-203ENST00000520755 CEP170BQ9Y4F5 1589 aaPredicted RBP22.62■■□□□ 1.21
LSM1-203ENST00000520755 NLRP1Q9C000 1473 aa22.6■■□□□ 1.21
LSM1-203ENST00000520755 A2ML1A8K2U0 1454 aa22.58■■□□□ 1.2
LSM1-203ENST00000520755 TRPM2O94759 1503 aa22.57■■□□□ 1.2
LSM1-203ENST00000520755 PIK3C2BO00750 1634 aa22.57■■□□□ 1.2
LSM1-203ENST00000520755 FOXD1Q16676 465 aa22.57■■□□□ 1.2
LSM1-203ENST00000520755 UGGT1Q9NYU2 1555 aa22.56■■□□□ 1.2
LSM1-203ENST00000520755 PLA2R1Q13018 1463 aa22.56■■□□□ 1.2
LSM1-203ENST00000520755 CLTCL1P53675 1640 aa22.55■■□□□ 1.2
LSM1-203ENST00000520755 UBR1Q8IWV7 1749 aa22.54■■□□□ 1.2
LSM1-203ENST00000520755 HSPA2P54652 639 aa22.54■■□□□ 1.2
LSM1-203ENST00000520755 PTPRTO14522 1441 aa22.53■■□□□ 1.2
LSM1-203ENST00000520755 MYO5BQ9ULV0 1848 aa22.52■■□□□ 1.2
LSM1-203ENST00000520755 ANKRD30BQ9BXX2 1392 aa22.51■■□□□ 1.19
LSM1-203ENST00000520755 IDI1Q13907 227 aa22.51■■□□□ 1.19
LSM1-203ENST00000520755 SLC52A1Q9NWF4 448 aa22.51■■□□□ 1.19
LSM1-203ENST00000520755 ADGRB3O60242 1522 aa22.49■■□□□ 1.19
LSM1-203ENST00000520755 KDM5AP29375 1690 aaKnown RBP22.49■■□□□ 1.19
LSM1-203ENST00000520755 KIF1BO60333 1816 aa22.48■■□□□ 1.19
LSM1-203ENST00000520755 STAG3Q9UJ98 1225 aa22.48■■□□□ 1.19
LSM1-203ENST00000520755 TMEM131LA2VDJ0 1609 aa22.46■■□□□ 1.19
LSM1-203ENST00000520755 CHGAP10645 457 aaKnown RBP22.45■■□□□ 1.18
LSM1-203ENST00000520755 THEMISQ8N1K5 641 aaPredicted RBP22.44■■□□□ 1.18
LSM1-203ENST00000520755 STRCQ7RTU9 1775 aa22.43■■□□□ 1.18
LSM1-203ENST00000520755 CCER1Q8TC90 406 aaPredicted RBP22.43■■□□□ 1.18
LSM1-203ENST00000520755 POLR1AO95602 1720 aaPredicted RBP22.43■■□□□ 1.18
LSM1-203ENST00000520755 CCDC144AA2RUR9 1427 aa22.41■■□□□ 1.18
LSM1-203ENST00000520755 CLSPNQ9HAW4 1339 aa22.4■■□□□ 1.18
LSM1-203ENST00000520755 IFT172Q9UG01 1749 aa22.39■■□□□ 1.17
LSM1-203ENST00000520755 NEURL4Q96JN8 1562 aa22.38■■□□□ 1.17
LSM1-203ENST00000520755 SLIT1O75093 1534 aa22.37■■□□□ 1.17
LSM1-203ENST00000520755 TMEM2Q9UHN6 1383 aa22.36■■□□□ 1.17
LSM1-203ENST00000520755 ARHGAP23Q9P227 1491 aa22.35■■□□□ 1.17
LSM1-203ENST00000520755 NCKAP5LQ9HCH0 1330 aa22.35■■□□□ 1.17
LSM1-203ENST00000520755 SIN3AQ96ST3 1273 aa22.35■■□□□ 1.17
LSM1-203ENST00000520755 SPATA31E1Q6ZUB1 1445 aa22.33■■□□□ 1.17
LSM1-203ENST00000520755 PPLO60437 1756 aa22.33■■□□□ 1.17
LSM1-203ENST00000520755 ZNF326Q5BKZ1 582 aaKnown RBP22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms