RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 STAG3Q9UJ98 1225 aa12.28□□□□□ -0.44
LIMCH1-209ENST00000509277 CFAP65Q6ZU64 1925 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-209ENST00000509277 ATP7AQ04656 1500 aa12.27□□□□□ -0.44
LIMCH1-209ENST00000509277 NEO1Q92859 1461 aa12.26□□□□□ -0.45
LIMCH1-209ENST00000509277 POLR3GLQ9BT43 218 aa12.26□□□□□ -0.45
LIMCH1-209ENST00000509277 KIF13AQ9H1H9 1805 aa12.25□□□□□ -0.45
LIMCH1-209ENST00000509277 ZNF316A6NFI3 1004 aaPredicted RBP12.25□□□□□ -0.45
LIMCH1-209ENST00000509277 CEBPAP49715 358 aaPredicted RBP12.25□□□□□ -0.45
LIMCH1-209ENST00000509277 ARHGEF5Q12774 1597 aa12.24□□□□□ -0.45
LIMCH1-209ENST00000509277 A2MP01023 1474 aa12.24□□□□□ -0.45
LIMCH1-209ENST00000509277 DHX29Q7Z478 1369 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-209ENST00000509277 MAP3K4Q9Y6R4 1608 aa12.23□□□□□ -0.45
LIMCH1-209ENST00000509277 FBXO31Q5XUX0 539 aaPredicted RBP12.23□□□□□ -0.45
LIMCH1-209ENST00000509277 CNGB1Q14028 1251 aaPredicted RBP12.23□□□□□ -0.45
LIMCH1-209ENST00000509277 DCAF11Q8TEB1 546 aa12.23□□□□□ -0.45
LIMCH1-209ENST00000509277 SHANK2Q9UPX8 1470 aa12.22□□□□□ -0.45
LIMCH1-209ENST00000509277 ADGBQ8N7X0 1667 aa12.22□□□□□ -0.45
LIMCH1-209ENST00000509277 ZFYVE16Q7Z3T8 1539 aa12.22□□□□□ -0.45
LIMCH1-209ENST00000509277 L3MBTL2Q969R5 705 aa12.21□□□□□ -0.45
LIMCH1-209ENST00000509277 ADGRL2O95490 1459 aa12.21□□□□□ -0.45
LIMCH1-209ENST00000509277 CROCC2H7BZ55 1655 aa12.21□□□□□ -0.46
LIMCH1-209ENST00000509277 GLI2P10070 1586 aa12.2□□□□□ -0.46
LIMCH1-209ENST00000509277 CFAP74Q9C0B2 1584 aa12.2□□□□□ -0.46
LIMCH1-209ENST00000509277 DUOX2Q9NRD8 1548 aa12.2□□□□□ -0.46
LIMCH1-209ENST00000509277 ARAP3Q8WWN8 1544 aa12.2□□□□□ -0.46
LIMCH1-209ENST00000509277 TSHZ2Q9NRE2 1034 aa12.19□□□□□ -0.46
LIMCH1-209ENST00000509277 SUPT16HQ9Y5B9 1047 aaKnown RBP12.18□□□□□ -0.46
LIMCH1-209ENST00000509277 HECW2Q9P2P5 1572 aa12.18□□□□□ -0.46
LIMCH1-209ENST00000509277 GCC2Q8IWJ2 1684 aa12.18□□□□□ -0.46
LIMCH1-209ENST00000509277 RTEL1-TNFRSF6BF6WH68 1400 aa12.18□□□□□ -0.46
LIMCH1-209ENST00000509277 KIDINS220Q9ULH0 1771 aa12.17□□□□□ -0.46
LIMCH1-209ENST00000509277 PZPP20742 1482 aa12.16□□□□□ -0.46
LIMCH1-209ENST00000509277 CCDC144AA2RUR9 1427 aa12.16□□□□□ -0.46
LIMCH1-209ENST00000509277 PPRC1Q5VV67 1664 aaKnown RBP12.15□□□□□ -0.46
LIMCH1-209ENST00000509277 MLH3Q9UHC1 1453 aa12.15□□□□□ -0.46
LIMCH1-209ENST00000509277 ERBINQ96RT1 1412 aa12.15□□□□□ -0.46
LIMCH1-209ENST00000509277 FAM135AQ9P2D6 1515 aa12.15□□□□□ -0.46
LIMCH1-209ENST00000509277 ATP10AO60312 1499 aa12.15□□□□□ -0.46
LIMCH1-209ENST00000509277 ABCA6Q8N139 1617 aa12.14□□□□□ -0.47
LIMCH1-209ENST00000509277 PPP1R15AO75807 674 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-209ENST00000509277 FKBP8Q14318 412 aa12.12□□□□□ -0.47
LIMCH1-209ENST00000509277 CCDC136Q96JN2 1154 aa12.12□□□□□ -0.47
LIMCH1-209ENST00000509277 ANKRD30BQ9BXX2 1392 aa12.12□□□□□ -0.47
LIMCH1-209ENST00000509277 INO80Q9ULG1 1556 aaPredicted RBP12.12□□□□□ -0.47
LIMCH1-209ENST00000509277 CLSPNQ9HAW4 1339 aa12.12□□□□□ -0.47
LIMCH1-209ENST00000509277 RICTORQ6R327 1708 aa12.12□□□□□ -0.47
LIMCH1-209ENST00000509277 DIP2CQ9Y2E4 1556 aa12.11□□□□□ -0.47
LIMCH1-209ENST00000509277 RTN4Q9NQC3 1192 aaKnown RBP12.1□□□□□ -0.47
LIMCH1-209ENST00000509277 PLXNC1O60486 1568 aa12.1□□□□□ -0.47
LIMCH1-209ENST00000509277 MAST1Q9Y2H9 1570 aa12.1□□□□□ -0.47
LIMCH1-209ENST00000509277 KDM5CP41229 1560 aa12.1□□□□□ -0.47
LIMCH1-209ENST00000509277 FRMPD1Q5SYB0 1578 aa12.1□□□□□ -0.47
LIMCH1-209ENST00000509277 IDI1Q13907 227 aa12.09□□□□□ -0.47
LIMCH1-209ENST00000509277 NEFLP07196 543 aa12.09□□□□□ -0.47
LIMCH1-209ENST00000509277 NBPF8Q3BBV2 869 aa12.08□□□□□ -0.48
LIMCH1-209ENST00000509277 SAFB2Q14151 953 aaKnown RBP eCLIP12.07□□□□□ -0.48
LIMCH1-209ENST00000509277 NBR1Q14596 966 aa12.07□□□□□ -0.48
LIMCH1-209ENST00000509277 UGGT1Q9NYU2 1555 aa12.07□□□□□ -0.48
LIMCH1-209ENST00000509277 STK26Q9P289 416 aa12.07□□□□□ -0.48
LIMCH1-209ENST00000509277 PHF23Q9BUL5 403 aaPredicted RBP12.06□□□□□ -0.48
LIMCH1-209ENST00000509277 CARD11Q9BXL7 1154 aa12.06□□□□□ -0.48
LIMCH1-209ENST00000509277 ANO8Q9HCE9 1232 aaPredicted RBP12.05□□□□□ -0.48
LIMCH1-209ENST00000509277 CEP152O94986 1710 aa12.05□□□□□ -0.48
LIMCH1-209ENST00000509277 ZMYM3Q14202 1370 aa12.05□□□□□ -0.48
LIMCH1-209ENST00000509277 NPATQ14207 1427 aa12.04□□□□□ -0.48
LIMCH1-209ENST00000509277 MAGI2Q86UL8 1455 aa12.04□□□□□ -0.48
LIMCH1-209ENST00000509277 NBPF1Q3BBV0 1214 aa12.04□□□□□ -0.48
LIMCH1-209ENST00000509277 TMEM132EQ6IEE7 984 aa12.03□□□□□ -0.48
LIMCH1-209ENST00000509277 IRX6P78412 446 aaPredicted RBP12.02□□□□□ -0.49
LIMCH1-209ENST00000509277 CFAP70Q5T0N1 1121 aa12.02□□□□□ -0.49
LIMCH1-209ENST00000509277 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.02□□□□□ -0.49
LIMCH1-209ENST00000509277 DDX10Q13206 875 aaKnown RBP12.01□□□□□ -0.49
LIMCH1-209ENST00000509277 PLA2R1Q13018 1463 aa12□□□□□ -0.49
LIMCH1-209ENST00000509277 RPRD2Q5VT52 1461 aaKnown RBP12□□□□□ -0.49
LIMCH1-209ENST00000509277 ARHGEF40Q8TER5 1519 aa12□□□□□ -0.49
LIMCH1-209ENST00000509277 HSPA5P11021 654 aaKnown RBP12□□□□□ -0.49
LIMCH1-209ENST00000509277 EIF4G2P78344 907 aaKnown RBP eCLIP12□□□□□ -0.49
LIMCH1-209ENST00000509277 ADGRF5Q8IZF2 1346 aa12□□□□□ -0.49
LIMCH1-209ENST00000509277 ROCK2O75116 1388 aaKnown RBP12□□□□□ -0.49
LIMCH1-209ENST00000509277 ABCC3O15438 1527 aa11.99□□□□□ -0.49
LIMCH1-209ENST00000509277 TRAK1Q9UPV9 953 aa11.99□□□□□ -0.49
LIMCH1-209ENST00000509277 PRDM15P57071 1507 aaPredicted RBP11.99□□□□□ -0.49
LIMCH1-209ENST00000509277 ZMYM4Q5VZL5 1548 aa11.99□□□□□ -0.49
LIMCH1-209ENST00000509277 UNC13BO14795 1591 aa11.99□□□□□ -0.49
LIMCH1-209ENST00000509277 EIF5BO60841 1220 aaKnown RBP11.99□□□□□ -0.49
LIMCH1-209ENST00000509277 CLTCQ00610 1675 aaKnown RBP11.98□□□□□ -0.49
LIMCH1-209ENST00000509277 E9PCH4 1651 aa11.98□□□□□ -0.49
LIMCH1-209ENST00000509277 IQGAP3Q86VI3 1631 aa11.98□□□□□ -0.49
LIMCH1-209ENST00000509277 SLC26A8Q96RN1 970 aa11.98□□□□□ -0.49
LIMCH1-209ENST00000509277 HSPA2P54652 639 aa11.97□□□□□ -0.49
LIMCH1-209ENST00000509277 RBM19Q9Y4C8 960 aaKnown RBP11.97□□□□□ -0.49
LIMCH1-209ENST00000509277 SIGLEC1Q9BZZ2 1709 aa11.97□□□□□ -0.49
LIMCH1-209ENST00000509277 SLC52A1Q9NWF4 448 aa11.97□□□□□ -0.49
LIMCH1-209ENST00000509277 TIMELESSQ9UNS1 1208 aa11.96□□□□□ -0.49
LIMCH1-209ENST00000509277 TXNDC2Q86VQ3 553 aa11.96□□□□□ -0.49
LIMCH1-209ENST00000509277 TNRQ92752 1358 aa11.96□□□□□ -0.5
LIMCH1-209ENST00000509277 MROH1Q8NDA8 1641 aa11.96□□□□□ -0.5
LIMCH1-209ENST00000509277 KDM5DQ9BY66 1539 aa11.95□□□□□ -0.5
LIMCH1-209ENST00000509277 NOS1P29475 1434 aa11.95□□□□□ -0.5
LIMCH1-209ENST00000509277 ST20-MTHFSA0A0A6YYL1 179 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms