RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 IPO9Q96P70 1041 aaKnown RBP20.72■□□□□ 0.91
PCDHA1-203ENST00000504120 GPATCH3Q96I76 525 aa20.72■□□□□ 0.91
PCDHA1-203ENST00000504120 MFAP1P55081 439 aaKnown RBP20.71■□□□□ 0.91
PCDHA1-203ENST00000504120 CCDC144AA2RUR9 1427 aa20.71■□□□□ 0.91
PCDHA1-203ENST00000504120 SYAP1Q96A49 352 aaPredicted RBP20.71■□□□□ 0.91
PCDHA1-203ENST00000504120 EID1Q9Y6B2 187 aa20.71■□□□□ 0.91
PCDHA1-203ENST00000504120 TSHZ2Q9NRE2 1034 aa20.7■□□□□ 0.9
PCDHA1-203ENST00000504120 ST20-MTHFSA0A0A6YYL1 179 aa20.69■□□□□ 0.9
PCDHA1-203ENST00000504120 CLUAP1Q96AJ1 413 aa20.69■□□□□ 0.9
PCDHA1-203ENST00000504120 UACAQ9BZF9 1416 aa20.68■□□□□ 0.9
PCDHA1-203ENST00000504120 NGDNQ8NEJ9 315 aaKnown RBP20.66■□□□□ 0.9
PCDHA1-203ENST00000504120 KIAA2012Q0VF49 1180 aa20.66■□□□□ 0.9
PCDHA1-203ENST00000504120 SYNJ1O43426 1573 aa20.66■□□□□ 0.9
PCDHA1-203ENST00000504120 PANK3Q9H999 370 aa20.66■□□□□ 0.9
PCDHA1-203ENST00000504120 TRAK1Q9UPV9 953 aa20.65■□□□□ 0.9
PCDHA1-203ENST00000504120 ZNF330Q9Y3S2 320 aaPredicted RBP20.65■□□□□ 0.9
PCDHA1-203ENST00000504120 TRIM6-TRIM34B2RNG4 842 aa20.65■□□□□ 0.9
PCDHA1-203ENST00000504120 GZF1Q9H116 711 aaPredicted RBP20.65■□□□□ 0.9
PCDHA1-203ENST00000504120 GORABQ5T7V8 394 aa20.64■□□□□ 0.89
PCDHA1-203ENST00000504120 NUTM2DQ5VT03 806 aaPredicted RBP20.64■□□□□ 0.89
PCDHA1-203ENST00000504120 AMPHP49418 695 aa20.63■□□□□ 0.89
PCDHA1-203ENST00000504120 SLC4A10Q6U841 1118 aa20.63■□□□□ 0.89
PCDHA1-203ENST00000504120 ISY1Q9ULR0 285 aaKnown RBP20.63■□□□□ 0.89
PCDHA1-203ENST00000504120 CUX1P39880 1505 aa20.62■□□□□ 0.89
PCDHA1-203ENST00000504120 PRKRIP1Q9H875 184 aaPredicted RBP20.62■□□□□ 0.89
PCDHA1-203ENST00000504120 TOP2BQ02880 1626 aa20.62■□□□□ 0.89
PCDHA1-203ENST00000504120 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.61■□□□□ 0.89
PCDHA1-203ENST00000504120 GOLGA6L3A6NEY3 463 aa20.61■□□□□ 0.89
PCDHA1-203ENST00000504120 GRIN2BQ13224 1484 aa20.6■□□□□ 0.89
PCDHA1-203ENST00000504120 CSPP1Q1MSJ5 1256 aa20.6■□□□□ 0.89
PCDHA1-203ENST00000504120 CENPQQ7L2Z9 268 aaPredicted RBP20.6■□□□□ 0.89
PCDHA1-203ENST00000504120 E9PSI1 815 aa20.59■□□□□ 0.89
PCDHA1-203ENST00000504120 TAF7LQ5H9L4 462 aa20.59■□□□□ 0.89
PCDHA1-203ENST00000504120 CASKIN1Q8WXD9 1431 aa20.59■□□□□ 0.89
PCDHA1-203ENST00000504120 CHMP3Q9Y3E7 222 aa20.59■□□□□ 0.89
PCDHA1-203ENST00000504120 CC2D2AQ9P2K1 1620 aa20.58■□□□□ 0.89
PCDHA1-203ENST00000504120 CGNL1Q0VF96 1302 aa20.58■□□□□ 0.89
PCDHA1-203ENST00000504120 VGFO15240 615 aaPredicted RBP20.58■□□□□ 0.89
PCDHA1-203ENST00000504120 USP47Q96K76 1375 aa20.58■□□□□ 0.88
PCDHA1-203ENST00000504120 ZBED9Q6R2W3 1325 aa20.58■□□□□ 0.88
PCDHA1-203ENST00000504120 AQRO60306 1485 aaKnown RBP eCLIP20.57■□□□□ 0.88
PCDHA1-203ENST00000504120 MYOM3Q5VTT5 1437 aa20.57■□□□□ 0.88
PCDHA1-203ENST00000504120 ST18O60284 1047 aa20.57■□□□□ 0.88
PCDHA1-203ENST00000504120 TPM4P67936 248 aa20.57■□□□□ 0.88
PCDHA1-203ENST00000504120 CCDC34Q96HJ3 373 aa20.57■□□□□ 0.88
PCDHA1-203ENST00000504120 EVC2Q86UK5 1308 aa20.56■□□□□ 0.88
PCDHA1-203ENST00000504120 FGD6Q6ZV73 1430 aa20.56■□□□□ 0.88
PCDHA1-203ENST00000504120 RRP7AQ9Y3A4 280 aaKnown RBP20.55■□□□□ 0.88
PCDHA1-203ENST00000504120 LRRC9Q6ZRR7 1453 aa20.55■□□□□ 0.88
PCDHA1-203ENST00000504120 HSP90B1P14625 803 aaKnown RBP20.55■□□□□ 0.88
PCDHA1-203ENST00000504120 PRXQ9BXM0 1461 aa20.53■□□□□ 0.88
PCDHA1-203ENST00000504120 RRP1P56182 461 aaKnown RBP20.53■□□□□ 0.88
PCDHA1-203ENST00000504120 ZKSCAN2Q63HK3 967 aa20.53■□□□□ 0.88
PCDHA1-203ENST00000504120 MRC2Q9UBG0 1479 aa20.53■□□□□ 0.88
PCDHA1-203ENST00000504120 CLSTN1O94985 981 aa20.52■□□□□ 0.88
PCDHA1-203ENST00000504120 FAM161AQ3B820 660 aa20.52■□□□□ 0.88
PCDHA1-203ENST00000504120 COG3Q96JB2 828 aa20.52■□□□□ 0.88
PCDHA1-203ENST00000504120 NGEFQ8N5V2 710 aa20.51■□□□□ 0.87
PCDHA1-203ENST00000504120 LTV1Q96GA3 475 aaPredicted RBP20.51■□□□□ 0.87
PCDHA1-203ENST00000504120 BICRAQ9NZM4 1560 aa20.51■□□□□ 0.87
PCDHA1-203ENST00000504120 TOPBP1Q92547 1522 aa20.51■□□□□ 0.87
PCDHA1-203ENST00000504120 FYCO1Q9BQS8 1478 aa20.5■□□□□ 0.87
PCDHA1-203ENST00000504120 TMX4Q9H1E5 349 aaPredicted RBP20.5■□□□□ 0.87
PCDHA1-203ENST00000504120 EFCAB5A4FU69 1503 aa20.5■□□□□ 0.87
PCDHA1-203ENST00000504120 KIF3AQ9Y496 699 aa20.5■□□□□ 0.87
PCDHA1-203ENST00000504120 PHF14O94880 888 aa20.49■□□□□ 0.87
PCDHA1-203ENST00000504120 KIF16BQ96L93 1317 aa20.49■□□□□ 0.87
PCDHA1-203ENST00000504120 PDE4AP27815 886 aa20.48■□□□□ 0.87
PCDHA1-203ENST00000504120 USP35Q9P2H5 1018 aa20.48■□□□□ 0.87
PCDHA1-203ENST00000504120 IFT140Q96RY7 1462 aa20.48■□□□□ 0.87
PCDHA1-203ENST00000504120 NUTM2FA1L443 756 aa20.48■□□□□ 0.87
PCDHA1-203ENST00000504120 DDX11L8A8MPP1 907 aa20.48■□□□□ 0.87
PCDHA1-203ENST00000504120 NESP48681 1621 aa20.48■□□□□ 0.87
PCDHA1-203ENST00000504120 OSCARQ8IYS5 282 aa20.47■□□□□ 0.87
PCDHA1-203ENST00000504120 FOXD4L1Q9NU39 408 aa20.47■□□□□ 0.87
PCDHA1-203ENST00000504120 NOL8Q76FK4 1167 aaKnown RBP20.47■□□□□ 0.87
PCDHA1-203ENST00000504120 EXOC6Q8TAG9 804 aa20.47■□□□□ 0.87
PCDHA1-203ENST00000504120 ARAP1Q96P48 1450 aa20.46■□□□□ 0.87
PCDHA1-203ENST00000504120 PLIN1O60240 522 aa20.45■□□□□ 0.86
PCDHA1-203ENST00000504120 ANKRD45Q5TZF3 282 aa20.45■□□□□ 0.86
PCDHA1-203ENST00000504120 BCL2L13Q9BXK5 485 aa20.45■□□□□ 0.86
PCDHA1-203ENST00000504120 CRBNQ96SW2 442 aa20.45■□□□□ 0.86
PCDHA1-203ENST00000504120 POLA1P09884 1462 aaPredicted RBP20.44■□□□□ 0.86
PCDHA1-203ENST00000504120 DNMBPQ6XZF7 1577 aa20.44■□□□□ 0.86
PCDHA1-203ENST00000504120 CCDC9Q9Y3X0 531 aaKnown RBP20.44■□□□□ 0.86
PCDHA1-203ENST00000504120 ELL2O00472 640 aaPredicted RBP20.44■□□□□ 0.86
PCDHA1-203ENST00000504120 APAF1O14727 1248 aa20.43■□□□□ 0.86
PCDHA1-203ENST00000504120 STAC3Q96MF2 364 aa20.43■□□□□ 0.86
PCDHA1-203ENST00000504120 NCOA2Q15596 1464 aa20.43■□□□□ 0.86
PCDHA1-203ENST00000504120 CHMP4CQ96CF2 233 aa20.42■□□□□ 0.86
PCDHA1-203ENST00000504120 C1orf141Q5JVX7 400 aa20.41■□□□□ 0.86
PCDHA1-203ENST00000504120 COG6Q9Y2V7 657 aa20.41■□□□□ 0.86
PCDHA1-203ENST00000504120 DDX19BQ9UMR2 479 aa20.41■□□□□ 0.86
PCDHA1-203ENST00000504120 MINK1Q8N4C8 1332 aaPredicted RBP20.4■□□□□ 0.86
PCDHA1-203ENST00000504120 RILPL2Q969X0 211 aa20.4■□□□□ 0.86
PCDHA1-203ENST00000504120 DIAPH1O60610 1272 aaKnown RBP20.4■□□□□ 0.86
PCDHA1-203ENST00000504120 PRDM2Q13029 1718 aa20.38■□□□□ 0.85
PCDHA1-203ENST00000504120 ATP6V1DQ9Y5K8 247 aa20.38■□□□□ 0.85
PCDHA1-203ENST00000504120 RRBP1Q9P2E9 1410 aaKnown RBP20.38■□□□□ 0.85
PCDHA1-203ENST00000504120 TEFQ10587 303 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms