RNA–Protein interactions for RNA: ENST00000497993.5

TMEM39A-212, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 590 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-212ENST00000497993 RAD54L2Q9Y4B4 1467 aa10.06□□□□□ -0.8
TMEM39A-212ENST00000497993 CAMK2BQ13554 666 aa10.06□□□□□ -0.8
TMEM39A-212ENST00000497993 P3H3Q8IVL6 736 aa10.06□□□□□ -0.8
TMEM39A-212ENST00000497993 WRNQ14191 1432 aaPredicted RBP eCLIP10.06□□□□□ -0.8
TMEM39A-212ENST00000497993 SNPHO15079 494 aa10.03□□□□□ -0.8
TMEM39A-212ENST00000497993 SLC34A2O95436 690 aa10.03□□□□□ -0.8
TMEM39A-212ENST00000497993 AQRO60306 1485 aaKnown RBP eCLIP10.03□□□□□ -0.85e-7■■■■■ 45.1
TMEM39A-212ENST00000497993 GRIN2BQ13224 1484 aa10.03□□□□□ -0.8
TMEM39A-212ENST00000497993 DOK7Q18PE1 504 aa10.01□□□□□ -0.81
TMEM39A-212ENST00000497993 ERICH3Q5RHP9 1530 aa10.01□□□□□ -0.81
TMEM39A-212ENST00000497993 CLASP1Q7Z460 1538 aa10.01□□□□□ -0.81
TMEM39A-212ENST00000497993 ADAMTS12P58397 1594 aa10.01□□□□□ -0.81
TMEM39A-212ENST00000497993 GAPVD1Q14C86 1478 aa10□□□□□ -0.81
TMEM39A-212ENST00000497993 ARHGEF1Q92888 912 aaKnown RBP10□□□□□ -0.81
TMEM39A-212ENST00000497993 ARIH1Q9Y4X5 557 aaPredicted RBP10□□□□□ -0.81
TMEM39A-212ENST00000497993 SYNJ2O15056 1496 aa9.99□□□□□ -0.81
TMEM39A-212ENST00000497993 SNAPC4Q5SXM2 1469 aa9.99□□□□□ -0.81
TMEM39A-212ENST00000497993 RIMBP2O15034 1052 aa9.98□□□□□ -0.81
TMEM39A-212ENST00000497993 KCNV2Q8TDN2 545 aa9.98□□□□□ -0.81
TMEM39A-212ENST00000497993 PTCD2Q8WV60 388 aaKnown RBP9.98□□□□□ -0.81
TMEM39A-212ENST00000497993 PODXL2Q9NZ53 605 aa9.98□□□□□ -0.81
TMEM39A-212ENST00000497993 RIMBP3CA6NJZ7 1639 aa9.97□□□□□ -0.81
TMEM39A-212ENST00000497993 RIMBP3BA6NNM3 1639 aa9.97□□□□□ -0.81
TMEM39A-212ENST00000497993 RIMBP3Q9UFD9 1639 aa9.97□□□□□ -0.81
TMEM39A-212ENST00000497993 TBC1D12O60347 775 aa9.97□□□□□ -0.81
TMEM39A-212ENST00000497993 HOXB3P14651 431 aaPredicted RBP9.97□□□□□ -0.81
TMEM39A-212ENST00000497993 OXER1Q8TDS5 423 aa9.97□□□□□ -0.81
TMEM39A-212ENST00000497993 EMILIN3Q9NT22 766 aa9.97□□□□□ -0.81
TMEM39A-212ENST00000497993 ZSWIM6Q9HCJ5 1215 aa9.96□□□□□ -0.82
TMEM39A-212ENST00000497993 TDRD9Q8NDG6 1382 aaKnown RBP9.96□□□□□ -0.82
TMEM39A-212ENST00000497993 CUL7Q14999 1698 aa9.94□□□□□ -0.82
TMEM39A-212ENST00000497993 ARHGEF11O15085 1522 aa9.94□□□□□ -0.82
TMEM39A-212ENST00000497993 MAP3K9P80192 1104 aa9.94□□□□□ -0.82
TMEM39A-212ENST00000497993 ZNF710Q8N1W2 664 aa9.94□□□□□ -0.82
TMEM39A-212ENST00000497993 SHROOM2Q13796 1616 aa9.93□□□□□ -0.82
TMEM39A-212ENST00000497993 UPF1Q92900 1129 aaKnown RBP eCLIP9.92□□□□□ -0.82
TMEM39A-212ENST00000497993 PCDHGA4Q9Y5G9 962 aa9.92□□□□□ -0.82
TMEM39A-212ENST00000497993 GRIN2AQ12879 1464 aa9.91□□□□□ -0.82
TMEM39A-212ENST00000497993 NUP160Q12769 1436 aa9.91□□□□□ -0.82
TMEM39A-212ENST00000497993 SPDYE16A6NNV3 312 aaPredicted RBP9.91□□□□□ -0.82
TMEM39A-212ENST00000497993 FHAD1B1AJZ9 1412 aa9.9□□□□□ -0.82
TMEM39A-212ENST00000497993 DPYSL4O14531 572 aa9.9□□□□□ -0.82
TMEM39A-212ENST00000497993 CEP170Q5SW79 1584 aa9.89□□□□□ -0.83
TMEM39A-212ENST00000497993 GPR153Q6NV75 609 aa9.88□□□□□ -0.83
TMEM39A-212ENST00000497993 ZNF316A6NFI3 1004 aaPredicted RBP9.87□□□□□ -0.83
TMEM39A-212ENST00000497993 PDIA6Q15084 440 aa9.87□□□□□ -0.83
TMEM39A-212ENST00000497993 RUSC2Q8N2Y8 1516 aa9.87□□□□□ -0.83
TMEM39A-212ENST00000497993 EVI5O60447 810 aa9.86□□□□□ -0.83
TMEM39A-212ENST00000497993 HOXB1P14653 301 aaPredicted RBP9.86□□□□□ -0.83
TMEM39A-212ENST00000497993 ARSIQ5FYB1 569 aa9.86□□□□□ -0.83
TMEM39A-212ENST00000497993 ARAP1Q96P48 1450 aa9.85□□□□□ -0.83
TMEM39A-212ENST00000497993 ANO8Q9HCE9 1232 aaPredicted RBP9.85□□□□□ -0.83
TMEM39A-212ENST00000497993 KIF27Q86VH2 1401 aa9.84□□□□□ -0.83
TMEM39A-212ENST00000497993 KDM4FA0A1W2PPD8 638 aa9.84□□□□□ -0.83
TMEM39A-212ENST00000497993 ST18O60284 1047 aa9.82□□□□□ -0.84
TMEM39A-212ENST00000497993 PTGER2P43116 358 aa9.82□□□□□ -0.84
TMEM39A-212ENST00000497993 FAM163AQ96GL9 167 aaPredicted RBP9.82□□□□□ -0.84
TMEM39A-212ENST00000497993 NUDT7P0C024 238 aa9.81□□□□□ -0.84
TMEM39A-212ENST00000497993 CHMP7Q8WUX9 453 aaPredicted RBP9.8□□□□□ -0.84
TMEM39A-212ENST00000497993 KHSRPQ92945 711 aaKnown RBP eCLIP9.8□□□□□ -0.842e-7■■□□□ 13.8
TMEM39A-212ENST00000497993 IGF1RP08069 1367 aa9.79□□□□□ -0.84
TMEM39A-212ENST00000497993 SEMA3EO15041 775 aa9.79□□□□□ -0.84
TMEM39A-212ENST00000497993 TESPA1A2RU30 521 aaPredicted RBP9.78□□□□□ -0.84
TMEM39A-212ENST00000497993 PSDA5PKW4 1024 aaPredicted RBP9.77□□□□□ -0.85
TMEM39A-212ENST00000497993 SMYD5Q6GMV2 418 aa9.77□□□□□ -0.85
TMEM39A-212ENST00000497993 CTTNBP2Q8WZ74 1663 aa9.77□□□□□ -0.85
TMEM39A-212ENST00000497993 KIAA0586Q9BVV6 1533 aa9.77□□□□□ -0.85
TMEM39A-212ENST00000497993 ERCC6L2Q5T890 1561 aa9.76□□□□□ -0.85
TMEM39A-212ENST00000497993 PHF14O94880 888 aa9.75□□□□□ -0.85
TMEM39A-212ENST00000497993 BRPF1P55201 1214 aaPredicted RBP9.74□□□□□ -0.85
TMEM39A-212ENST00000497993 JPH4Q96JJ6 628 aa9.74□□□□□ -0.85
TMEM39A-212ENST00000497993 LHX6Q9UPM6 363 aa9.74□□□□□ -0.85
TMEM39A-212ENST00000497993 IQGAP2Q13576 1575 aa9.73□□□□□ -0.85
TMEM39A-212ENST00000497993 EMP3P54852 163 aa9.73□□□□□ -0.85
TMEM39A-212ENST00000497993 LCE2DQ5TA82 110 aaPredicted RBP9.73□□□□□ -0.85
TMEM39A-212ENST00000497993 DDX12PQ92771 950 aa9.73□□□□□ -0.85
TMEM39A-212ENST00000497993 EPAS1Q99814 870 aa9.73□□□□□ -0.85
TMEM39A-212ENST00000497993 MLLT3P42568 568 aaPredicted RBP9.72□□□□□ -0.85
TMEM39A-212ENST00000497993 FOSBP53539 338 aa9.72□□□□□ -0.85
TMEM39A-212ENST00000497993 GRXCR2A6NFK2 248 aa9.71□□□□□ -0.86
TMEM39A-212ENST00000497993 NPM2Q86SE8 214 aaKnown RBP9.71□□□□□ -0.86
TMEM39A-212ENST00000497993 ERBB3P21860 1342 aa9.71□□□□□ -0.86
TMEM39A-212ENST00000497993 CARMIL1Q5VZK9 1371 aa9.71□□□□□ -0.86
TMEM39A-212ENST00000497993 PRXQ9BXM0 1461 aa9.71□□□□□ -0.86
TMEM39A-212ENST00000497993 LMOD2Q6P5Q4 547 aa9.7□□□□□ -0.86
TMEM39A-212ENST00000497993 FBXW7Q969H0 707 aa9.7□□□□□ -0.86
TMEM39A-212ENST00000497993 MARVELD3Q96A59 401 aa9.7□□□□□ -0.86
TMEM39A-212ENST00000497993 PCDHGA10Q9Y5H3 936 aa9.7□□□□□ -0.86
TMEM39A-212ENST00000497993 RAPGEF2Q9Y4G8 1499 aa9.7□□□□□ -0.86
TMEM39A-212ENST00000497993 UGGT2Q9NYU1 1516 aa9.7□□□□□ -0.86
TMEM39A-212ENST00000497993 EEA1Q15075 1411 aa9.69□□□□□ -0.86
TMEM39A-212ENST00000497993 PPP4R3BQ5MIZ7 849 aa9.69□□□□□ -0.86
TMEM39A-212ENST00000497993 TYW1BQ6NUM6 668 aa9.69□□□□□ -0.86
TMEM39A-212ENST00000497993 ZNF454Q8N9F8 522 aa9.69□□□□□ -0.86
TMEM39A-212ENST00000497993 OSBPP22059 807 aa9.68□□□□□ -0.86
TMEM39A-212ENST00000497993 ZDHHC16Q969W1 377 aa9.68□□□□□ -0.86
TMEM39A-212ENST00000497993 KIF13AQ9H1H9 1805 aa9.68□□□□□ -0.86
TMEM39A-212ENST00000497993 PRG4Q92954 1404 aaPredicted RBP9.67□□□□□ -0.86
TMEM39A-212ENST00000497993 FAM205CA6NFA0 338 aa9.66□□□□□ -0.86
TMEM39A-212ENST00000497993 VARS2Q5ST30 1063 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms