RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 CHIC2Q9UKJ5 165 aa16.85■□□□□ 0.29
VEGFA-215ENST00000497139 NAP1L5Q96NT1 182 aaPredicted RBP16.84■□□□□ 0.29
VEGFA-215ENST00000497139 PARD3Q8TEW0 1356 aa16.84■□□□□ 0.29
VEGFA-215ENST00000497139 BECN1Q14457 450 aa16.83■□□□□ 0.29
VEGFA-215ENST00000497139 MRC2Q9UBG0 1479 aa16.83■□□□□ 0.29
VEGFA-215ENST00000497139 DNMT1P26358 1616 aaKnown RBP16.83■□□□□ 0.29
VEGFA-215ENST00000497139 POGKQ9P215 609 aa16.83■□□□□ 0.28
VEGFA-215ENST00000497139 FOXD1Q16676 465 aa16.83■□□□□ 0.28
VEGFA-215ENST00000497139 ARHGEF12Q9NZN5 1544 aa16.82■□□□□ 0.28
VEGFA-215ENST00000497139 ADAMTS12P58397 1594 aa16.81■□□□□ 0.28
VEGFA-215ENST00000497139 ERCC6Q03468 1493 aa16.81■□□□□ 0.28
VEGFA-215ENST00000497139 DAPK1P53355 1430 aa16.8■□□□□ 0.28
VEGFA-215ENST00000497139 CENPJQ9HC77 1338 aaPredicted RBP16.8■□□□□ 0.28
VEGFA-215ENST00000497139 FSD2A1L4K1 749 aa16.8■□□□□ 0.28
VEGFA-215ENST00000497139 SLC4A1APQ9BWU0 796 aaKnown RBP16.79■□□□□ 0.28
VEGFA-215ENST00000497139 PZPP20742 1482 aa16.79■□□□□ 0.28
VEGFA-215ENST00000497139 POLR3GLQ9BT43 218 aa16.79■□□□□ 0.28
VEGFA-215ENST00000497139 PLIN1O60240 522 aa16.78■□□□□ 0.28
VEGFA-215ENST00000497139 KIAA1107Q9UPP5 1409 aa16.78■□□□□ 0.28
VEGFA-215ENST00000497139 GOLGA6L3A6NEY3 463 aa16.78■□□□□ 0.28
VEGFA-215ENST00000497139 IQGAP2Q13576 1575 aa16.78■□□□□ 0.28
VEGFA-215ENST00000497139 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.77■□□□□ 0.28
VEGFA-215ENST00000497139 SKAP1Q86WV1 359 aa16.77■□□□□ 0.28
VEGFA-215ENST00000497139 CDCA7LQ96GN5 454 aa16.77■□□□□ 0.28
VEGFA-215ENST00000497139 EIF3AQ14152 1382 aaKnown RBP16.77■□□□□ 0.27
VEGFA-215ENST00000497139 CNGB1Q14028 1251 aaPredicted RBP16.76■□□□□ 0.27
VEGFA-215ENST00000497139 ISY1Q9ULR0 285 aaKnown RBP16.76■□□□□ 0.27
VEGFA-215ENST00000497139 SENP3-EIF4A1A0A087X0R7 540 aa16.75■□□□□ 0.27
VEGFA-215ENST00000497139 XRCC6P12956 609 aaKnown RBP eCLIP16.74■□□□□ 0.273e-22■□□□□ 8
VEGFA-215ENST00000497139 TPM2P07951 284 aa16.74■□□□□ 0.27
VEGFA-215ENST00000497139 CCDC144AA2RUR9 1427 aa16.73■□□□□ 0.27
VEGFA-215ENST00000497139 IFT140Q96RY7 1462 aa16.73■□□□□ 0.27
VEGFA-215ENST00000497139 ANTXR1Q9H6X2 564 aa16.73■□□□□ 0.27
VEGFA-215ENST00000497139 USP19O94966 1318 aa16.73■□□□□ 0.27
VEGFA-215ENST00000497139 ZMYM3Q14202 1370 aa16.73■□□□□ 0.27
VEGFA-215ENST00000497139 ABCC5O15440 1437 aa16.72■□□□□ 0.27
VEGFA-215ENST00000497139 WDR62O43379 1518 aa16.72■□□□□ 0.27
VEGFA-215ENST00000497139 MRE11P49959 708 aa16.71■□□□□ 0.27
VEGFA-215ENST00000497139 EPRSP07814 1512 aaKnown RBP16.71■□□□□ 0.27
VEGFA-215ENST00000497139 ADGBQ8N7X0 1667 aa16.71■□□□□ 0.27
VEGFA-215ENST00000497139 PDCL3Q9H2J4 239 aa16.7■□□□□ 0.26
VEGFA-215ENST00000497139 ZNF608Q9ULD9 1512 aaPredicted RBP16.7■□□□□ 0.26
VEGFA-215ENST00000497139 MAPK8IP3Q9UPT6 1336 aa16.7■□□□□ 0.26
VEGFA-215ENST00000497139 C20orf194Q5TEA3 1177 aa16.7■□□□□ 0.26
VEGFA-215ENST00000497139 CLASP1Q7Z460 1538 aa16.7■□□□□ 0.26
VEGFA-215ENST00000497139 PODXL2Q9NZ53 605 aa16.69■□□□□ 0.26
VEGFA-215ENST00000497139 CARD11Q9BXL7 1154 aa16.69■□□□□ 0.26
VEGFA-215ENST00000497139 NLRP1Q9C000 1473 aa16.68■□□□□ 0.26
VEGFA-215ENST00000497139 CALD1Q05682 793 aaKnown RBP16.67■□□□□ 0.26
VEGFA-215ENST00000497139 ESPNB1AK53 854 aa16.65■□□□□ 0.26
VEGFA-215ENST00000497139 RGS3P49796 1198 aa16.65■□□□□ 0.26
VEGFA-215ENST00000497139 ADGRL2O95490 1459 aa16.64■□□□□ 0.25
VEGFA-215ENST00000497139 ST20-MTHFSA0A0A6YYL1 179 aa16.63■□□□□ 0.25
VEGFA-215ENST00000497139 PER1O15534 1290 aaPredicted RBP16.63■□□□□ 0.25
VEGFA-215ENST00000497139 MCM4P33991 863 aa16.63■□□□□ 0.25
VEGFA-215ENST00000497139 DUSP27Q5VZP5 1158 aa16.63■□□□□ 0.25
VEGFA-215ENST00000497139 KIAA0586Q9BVV6 1533 aa16.63■□□□□ 0.25
VEGFA-215ENST00000497139 NINLQ9Y2I6 1382 aa16.63■□□□□ 0.25
VEGFA-215ENST00000497139 ZNF326Q5BKZ1 582 aaKnown RBP16.62■□□□□ 0.25
VEGFA-215ENST00000497139 MYH16Q9H6N6 1097 aa16.62■□□□□ 0.25
VEGFA-215ENST00000497139 UPF2Q9HAU5 1272 aaKnown RBP16.62■□□□□ 0.25
VEGFA-215ENST00000497139 CEP170Q5SW79 1584 aa16.62■□□□□ 0.25
VEGFA-215ENST00000497139 SLKQ9H2G2 1235 aaPredicted RBP16.61■□□□□ 0.25
VEGFA-215ENST00000497139 LAMC1P11047 1609 aa16.61■□□□□ 0.25
VEGFA-215ENST00000497139 ZNF521Q96K83 1311 aa16.6■□□□□ 0.25
VEGFA-215ENST00000497139 KIAA0556O60303 1618 aa16.6■□□□□ 0.25
VEGFA-215ENST00000497139 CDK13Q14004 1512 aaKnown RBP16.6■□□□□ 0.25
VEGFA-215ENST00000497139 TERF1P54274 439 aa16.6■□□□□ 0.25
VEGFA-215ENST00000497139 PANK2Q9BZ23 570 aa16.6■□□□□ 0.25
VEGFA-215ENST00000497139 COL17A1Q9UMD9 1497 aaPredicted RBP16.59■□□□□ 0.25
VEGFA-215ENST00000497139 EIF4G3O43432 1585 aaKnown RBP16.59■□□□□ 0.25
VEGFA-215ENST00000497139 CROCC2H7BZ55 1655 aa16.59■□□□□ 0.25
VEGFA-215ENST00000497139 DISP1Q96F81 1524 aa16.58■□□□□ 0.25
VEGFA-215ENST00000497139 TBC1D32Q96NH3 1257 aa16.58■□□□□ 0.25
VEGFA-215ENST00000497139 MAP7D2Q96T17 732 aa16.58■□□□□ 0.25
VEGFA-215ENST00000497139 GRPEL1Q9HAV7 217 aa16.58■□□□□ 0.25
VEGFA-215ENST00000497139 GRIN2AQ12879 1464 aa16.58■□□□□ 0.24
VEGFA-215ENST00000497139 KDM5DQ9BY66 1539 aa16.57■□□□□ 0.24
VEGFA-215ENST00000497139 DDX11L8A8MPP1 907 aa16.57■□□□□ 0.24
VEGFA-215ENST00000497139 GOLGA2Q08379 1002 aa16.57■□□□□ 0.24
VEGFA-215ENST00000497139 AAMPQ13685 434 aa16.57■□□□□ 0.24
VEGFA-215ENST00000497139 ANKRD30AQ9BXX3 1397 aa16.57■□□□□ 0.24
VEGFA-215ENST00000497139 CGNL1Q0VF96 1302 aa16.57■□□□□ 0.24
VEGFA-215ENST00000497139 TRPM1Q7Z4N2 1603 aa16.56■□□□□ 0.24
VEGFA-215ENST00000497139 TRAK2O60296 914 aa16.56■□□□□ 0.24
VEGFA-215ENST00000497139 CHMP5Q9NZZ3 219 aa16.56■□□□□ 0.24
VEGFA-215ENST00000497139 PKD2Q13563 968 aa16.56■□□□□ 0.24
VEGFA-215ENST00000497139 TRIM44Q96DX7 344 aaPredicted RBP16.56■□□□□ 0.24
VEGFA-215ENST00000497139 SCAPERQ9BY12 1400 aa16.56■□□□□ 0.24
VEGFA-215ENST00000497139 TBC1D2Q9BYX2 928 aa16.55■□□□□ 0.24
VEGFA-215ENST00000497139 SLC24A1O60721 1099 aa16.55■□□□□ 0.24
VEGFA-215ENST00000497139 ITSN2Q9NZM3 1697 aa16.55■□□□□ 0.24
VEGFA-215ENST00000497139 TRMT2AQ8IZ69 625 aaKnown RBP16.54■□□□□ 0.24
VEGFA-215ENST00000497139 PLEKHH1Q9ULM0 1364 aa16.54■□□□□ 0.24
VEGFA-215ENST00000497139 NKTRP30414 1462 aaKnown RBP16.54■□□□□ 0.24
VEGFA-215ENST00000497139 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
VEGFA-215ENST00000497139 PDE3AQ14432 1141 aa16.54■□□□□ 0.24
VEGFA-215ENST00000497139 PLXNC1O60486 1568 aa16.53■□□□□ 0.24
VEGFA-215ENST00000497139 CAMSAP2Q08AD1 1489 aa16.53■□□□□ 0.24
VEGFA-215ENST00000497139 PTMSP20962 102 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms