RNA–Protein interactions for RNA: ENST00000494334.1

COL1A1-208, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-208ENST00000494334 ROCK1Q13464 1354 aa20.59■□□□□ 0.89
COL1A1-208ENST00000494334 CEBPAP49715 358 aaPredicted RBP20.59■□□□□ 0.89
COL1A1-208ENST00000494334 CNTLNQ9NXG0 1405 aa20.58■□□□□ 0.88
COL1A1-208ENST00000494334 EIF2AK4Q9P2K8 1649 aaKnown RBP20.56■□□□□ 0.88
COL1A1-208ENST00000494334 ZMYM3Q14202 1370 aa20.55■□□□□ 0.88
COL1A1-208ENST00000494334 WASHC2CQ9Y4E1 1318 aa20.54■□□□□ 0.88
COL1A1-208ENST00000494334 ANKRD50Q9ULJ7 1429 aa20.54■□□□□ 0.88
COL1A1-208ENST00000494334 RNF17Q9BXT8 1623 aaKnown RBP20.52■□□□□ 0.88
COL1A1-208ENST00000494334 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.5■□□□□ 0.87
COL1A1-208ENST00000494334 MROH1Q8NDA8 1641 aa20.49■□□□□ 0.87
COL1A1-208ENST00000494334 CLTCQ00610 1675 aaKnown RBP20.49■□□□□ 0.87
COL1A1-208ENST00000494334 KDM5DQ9BY66 1539 aa20.48■□□□□ 0.87
COL1A1-208ENST00000494334 FAM135AQ9P2D6 1515 aa20.48■□□□□ 0.87
COL1A1-208ENST00000494334 MROH2AA6NES4 1674 aa20.46■□□□□ 0.87
COL1A1-208ENST00000494334 C3P01024 1663 aa20.46■□□□□ 0.87
COL1A1-208ENST00000494334 ABCC3O15438 1527 aa20.45■□□□□ 0.86
COL1A1-208ENST00000494334 PRDM15P57071 1507 aaPredicted RBP20.45■□□□□ 0.86
COL1A1-208ENST00000494334 NAIPQ13075 1403 aa20.44■□□□□ 0.86
COL1A1-208ENST00000494334 DEPDC5O75140 1603 aa20.44■□□□□ 0.86
COL1A1-208ENST00000494334 KANK1Q14678 1352 aa20.44■□□□□ 0.86
COL1A1-208ENST00000494334 FBXO31Q5XUX0 539 aaPredicted RBP20.42■□□□□ 0.86
COL1A1-208ENST00000494334 HFM1A2PYH4 1435 aa20.41■□□□□ 0.86
COL1A1-208ENST00000494334 NPATQ14207 1427 aa20.41■□□□□ 0.86
COL1A1-208ENST00000494334 PZPP20742 1482 aa20.4■□□□□ 0.86
COL1A1-208ENST00000494334 ZC3H13Q5T200 1668 aaKnown RBP20.39■□□□□ 0.86
COL1A1-208ENST00000494334 VWDEQ8N2E2 1590 aa20.39■□□□□ 0.85
COL1A1-208ENST00000494334 LMTK3Q96Q04 1460 aa20.37■□□□□ 0.85
COL1A1-208ENST00000494334 LMTK2Q8IWU2 1503 aa20.37■□□□□ 0.85
COL1A1-208ENST00000494334 ARHGAP31Q2M1Z3 1444 aa20.36■□□□□ 0.85
COL1A1-208ENST00000494334 CEP152O94986 1710 aa20.36■□□□□ 0.85
COL1A1-208ENST00000494334 SETD1BQ9UPS6 1966 aaKnown RBP20.36■□□□□ 0.85
COL1A1-208ENST00000494334 UHRF1BP1Q6BDS2 1440 aa20.36■□□□□ 0.85
COL1A1-208ENST00000494334 NUP155O75694 1391 aa20.35■□□□□ 0.85
COL1A1-208ENST00000494334 UNC13BO14795 1591 aa20.35■□□□□ 0.85
COL1A1-208ENST00000494334 CAMSAP1Q5T5Y3 1602 aa20.34■□□□□ 0.85
COL1A1-208ENST00000494334 GCC2Q8IWJ2 1684 aa20.33■□□□□ 0.85
COL1A1-208ENST00000494334 HSPA2P54652 639 aa20.33■□□□□ 0.85
COL1A1-208ENST00000494334 TNRQ92752 1358 aa20.33■□□□□ 0.84
COL1A1-208ENST00000494334 PREX1Q8TCU6 1659 aa20.32■□□□□ 0.84
COL1A1-208ENST00000494334 ERVK-7P63135 1459 aa20.3■□□□□ 0.84
COL1A1-208ENST00000494334 SPATA31D1Q6ZQQ2 1576 aa20.29■□□□□ 0.84
COL1A1-208ENST00000494334 EFCAB6Q5THR3 1501 aa20.28■□□□□ 0.84
COL1A1-208ENST00000494334 TRIM52Q96A61 297 aa20.28■□□□□ 0.84
COL1A1-208ENST00000494334 IQGAP3Q86VI3 1631 aa20.27■□□□□ 0.83
COL1A1-208ENST00000494334 SETD5Q9C0A6 1442 aa20.27■□□□□ 0.83
COL1A1-208ENST00000494334 TET3O43151 1660 aa20.25■□□□□ 0.83
COL1A1-208ENST00000494334 RPRD2Q5VT52 1461 aaKnown RBP20.24■□□□□ 0.83
COL1A1-208ENST00000494334 MYO3AQ8NEV4 1616 aa20.24■□□□□ 0.83
COL1A1-208ENST00000494334 NOS1P29475 1434 aa20.24■□□□□ 0.83
COL1A1-208ENST00000494334 A2ML1A8K2U0 1454 aa20.24■□□□□ 0.83
COL1A1-208ENST00000494334 CFAP65Q6ZU64 1925 aaKnown RBP20.23■□□□□ 0.83
COL1A1-208ENST00000494334 NLRP1Q9C000 1473 aa20.23■□□□□ 0.83
COL1A1-208ENST00000494334 CEP170BQ9Y4F5 1589 aaPredicted RBP20.22■□□□□ 0.83
COL1A1-208ENST00000494334 RAB3GAP2Q9H2M9 1393 aa20.21■□□□□ 0.83
COL1A1-208ENST00000494334 IDI1Q13907 227 aa20.19■□□□□ 0.82
COL1A1-208ENST00000494334 SLC4A1APQ9BWU0 796 aaKnown RBP20.19■□□□□ 0.82
COL1A1-208ENST00000494334 ZNF142P52746 1687 aaPredicted RBP20.19■□□□□ 0.82
COL1A1-208ENST00000494334 SLC52A1Q9NWF4 448 aa20.18■□□□□ 0.82
COL1A1-208ENST00000494334 E9PCH4 1651 aa20.18■□□□□ 0.82
COL1A1-208ENST00000494334 ACIN1Q9UKV3 1341 aaKnown RBP20.18■□□□□ 0.82
COL1A1-208ENST00000494334 PKD2Q13563 968 aa20.17■□□□□ 0.82
COL1A1-208ENST00000494334 THEMISQ8N1K5 641 aaPredicted RBP20.17■□□□□ 0.82
COL1A1-208ENST00000494334 SYNMO15061 1565 aa20.17■□□□□ 0.82
COL1A1-208ENST00000494334 UGGT1Q9NYU2 1555 aa20.16■□□□□ 0.82
COL1A1-208ENST00000494334 HRCP23327 699 aa20.15■□□□□ 0.82
COL1A1-208ENST00000494334 MPHOSPH9Q99550 1183 aa20.15■□□□□ 0.82
COL1A1-208ENST00000494334 TRIM26Q12899 539 aaPredicted RBP20.14■□□□□ 0.81
COL1A1-208ENST00000494334 PLA2R1Q13018 1463 aa20.12■□□□□ 0.81
COL1A1-208ENST00000494334 PTPRTO14522 1441 aa20.12■□□□□ 0.81
COL1A1-208ENST00000494334 NCKAP5LQ9HCH0 1330 aa20.12■□□□□ 0.81
COL1A1-208ENST00000494334 STAG3Q9UJ98 1225 aa20.12■□□□□ 0.81
COL1A1-208ENST00000494334 FOXD1Q16676 465 aa20.1■□□□□ 0.81
COL1A1-208ENST00000494334 PIK3C2BO00750 1634 aa20.09■□□□□ 0.81
COL1A1-208ENST00000494334 STRCQ7RTU9 1775 aa20.09■□□□□ 0.81
COL1A1-208ENST00000494334 ANKLE2Q86XL3 938 aa20.08■□□□□ 0.81
COL1A1-208ENST00000494334 DMRT2Q9Y5R5 561 aa20.08■□□□□ 0.81
COL1A1-208ENST00000494334 UBR1Q8IWV7 1749 aa20.07■□□□□ 0.8
COL1A1-208ENST00000494334 CHGAP10645 457 aaKnown RBP20.05■□□□□ 0.8
COL1A1-208ENST00000494334 TMEM2Q9UHN6 1383 aa20.04■□□□□ 0.8
COL1A1-208ENST00000494334 ARHGAP23Q9P227 1491 aa20.04■□□□□ 0.8
COL1A1-208ENST00000494334 ADGRB3O60242 1522 aa20.03■□□□□ 0.8
COL1A1-208ENST00000494334 SPHKAPQ2M3C7 1700 aa20.03■□□□□ 0.8
COL1A1-208ENST00000494334 LTKP29376 864 aa20.03■□□□□ 0.8
COL1A1-208ENST00000494334 SLIT1O75093 1534 aa20.02■□□□□ 0.8
COL1A1-208ENST00000494334 TRPM2O94759 1503 aa20.02■□□□□ 0.8
COL1A1-208ENST00000494334 TXNDC2Q86VQ3 553 aa20.02■□□□□ 0.8
COL1A1-208ENST00000494334 KDM5AP29375 1690 aaKnown RBP20.01■□□□□ 0.79
COL1A1-208ENST00000494334 EID1Q9Y6B2 187 aa20■□□□□ 0.79
COL1A1-208ENST00000494334 TMEM131LA2VDJ0 1609 aa19.99■□□□□ 0.79
COL1A1-208ENST00000494334 NEURL4Q96JN8 1562 aa19.98■□□□□ 0.79
COL1A1-208ENST00000494334 MED14O60244 1454 aa19.98■□□□□ 0.79
COL1A1-208ENST00000494334 CLTCL1P53675 1640 aa19.98■□□□□ 0.79
COL1A1-208ENST00000494334 NPHP4O75161 1426 aaPredicted RBP19.97■□□□□ 0.79
COL1A1-208ENST00000494334 SCAF11Q99590 1463 aaKnown RBP19.97■□□□□ 0.79
COL1A1-208ENST00000494334 ZFYVE9O95405 1425 aa19.95■□□□□ 0.78
COL1A1-208ENST00000494334 RIMS2Q9UQ26 1411 aa19.95■□□□□ 0.78
COL1A1-208ENST00000494334 HDGFP51858 240 aaKnown RBP19.95■□□□□ 0.78
COL1A1-208ENST00000494334 CCDC144AA2RUR9 1427 aa19.94■□□□□ 0.78
COL1A1-208ENST00000494334 POLR1AO95602 1720 aaPredicted RBP19.94■□□□□ 0.78
COL1A1-208ENST00000494334 ZNF326Q5BKZ1 582 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms