RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 DEPDC5O75140 1603 aa21.77■■□□□ 1.08
BRCA1-223ENST00000494123 FER1L4A9Z1Z3 1794 aa21.77■■□□□ 1.08
BRCA1-223ENST00000494123 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.77■■□□□ 1.071e-6■■■□□ 18.6
BRCA1-223ENST00000494123 ADAMTSL3P82987 1691 aa21.76■■□□□ 1.07
BRCA1-223ENST00000494123 PRDM15P57071 1507 aaPredicted RBP21.75■■□□□ 1.07
BRCA1-223ENST00000494123 MROH1Q8NDA8 1641 aa21.75■■□□□ 1.07
BRCA1-223ENST00000494123 UNC13BO14795 1591 aa21.75■■□□□ 1.07
BRCA1-223ENST00000494123 KANK1Q14678 1352 aa21.75■■□□□ 1.07
BRCA1-223ENST00000494123 MADDQ8WXG6 1647 aa21.74■■□□□ 1.07
BRCA1-223ENST00000494123 PPP6R1Q9UPN7 881 aa21.73■■□□□ 1.07
BRCA1-223ENST00000494123 WASHC2CQ9Y4E1 1318 aa21.72■■□□□ 1.07
BRCA1-223ENST00000494123 KDM5DQ9BY66 1539 aa21.72■■□□□ 1.07
BRCA1-223ENST00000494123 CLTCQ00610 1675 aaKnown RBP21.72■■□□□ 1.07
BRCA1-223ENST00000494123 FAM135AQ9P2D6 1515 aa21.71■■□□□ 1.07
BRCA1-223ENST00000494123 RAB3GAP2Q9H2M9 1393 aa21.71■■□□□ 1.07
BRCA1-223ENST00000494123 ZC3H13Q5T200 1668 aaKnown RBP21.71■■□□□ 1.07
BRCA1-223ENST00000494123 RIMS1Q86UR5 1692 aaKnown RBP21.71■■□□□ 1.07
BRCA1-223ENST00000494123 PCGF6Q9BYE7 350 aa21.7■■□□□ 1.06
BRCA1-223ENST00000494123 CNTLNQ9NXG0 1405 aa21.7■■□□□ 1.06
BRCA1-223ENST00000494123 CEP152O94986 1710 aa21.7■■□□□ 1.06
BRCA1-223ENST00000494123 TRIM52Q96A61 297 aa21.69■■□□□ 1.06
BRCA1-223ENST00000494123 NUP155O75694 1391 aa21.68■■□□□ 1.06
BRCA1-223ENST00000494123 ABCC3O15438 1527 aa21.67■■□□□ 1.06
BRCA1-223ENST00000494123 ACIN1Q9UKV3 1341 aaKnown RBP21.67■■□□□ 1.06
BRCA1-223ENST00000494123 VWDEQ8N2E2 1590 aa21.67■■□□□ 1.06
BRCA1-223ENST00000494123 KDM4FA0A1W2PPD8 638 aa21.66■■□□□ 1.06
BRCA1-223ENST00000494123 MROH2AA6NES4 1674 aa21.66■■□□□ 1.06
BRCA1-223ENST00000494123 IQGAP3Q86VI3 1631 aa21.66■■□□□ 1.06
BRCA1-223ENST00000494123 CAMSAP1Q5T5Y3 1602 aa21.64■■□□□ 1.05
BRCA1-223ENST00000494123 LMTK2Q8IWU2 1503 aa21.62■■□□□ 1.05
BRCA1-223ENST00000494123 PLPPR3Q6T4P5 718 aa21.62■■□□□ 1.05
BRCA1-223ENST00000494123 TET3O43151 1660 aa21.61■■□□□ 1.05
BRCA1-223ENST00000494123 HRCP23327 699 aa21.61■■□□□ 1.05
BRCA1-223ENST00000494123 PTPRMP28827 1452 aa21.61■■□□□ 1.05
BRCA1-223ENST00000494123 ZMYM3Q14202 1370 aa21.61■■□□□ 1.05
BRCA1-223ENST00000494123 C3P01024 1663 aa21.6■■□□□ 1.05
BRCA1-223ENST00000494123 EFCAB6Q5THR3 1501 aa21.58■■□□□ 1.05
BRCA1-223ENST00000494123 CEBPAP49715 358 aaPredicted RBP21.56■■□□□ 1.04
BRCA1-223ENST00000494123 SLC4A1APQ9BWU0 796 aaKnown RBP21.56■■□□□ 1.04
BRCA1-223ENST00000494123 PZPP20742 1482 aa21.56■■□□□ 1.04
BRCA1-223ENST00000494123 ARHGAP31Q2M1Z3 1444 aa21.54■■□□□ 1.04
BRCA1-223ENST00000494123 NPATQ14207 1427 aa21.53■■□□□ 1.04
BRCA1-223ENST00000494123 E9PCH4 1651 aa21.53■■□□□ 1.04
BRCA1-223ENST00000494123 CFAP65Q6ZU64 1925 aaKnown RBP21.53■■□□□ 1.04
BRCA1-223ENST00000494123 MPHOSPH9Q99550 1183 aa21.52■■□□□ 1.04
BRCA1-223ENST00000494123 RPRD2Q5VT52 1461 aaKnown RBP21.51■■□□□ 1.03
BRCA1-223ENST00000494123 PREX1Q8TCU6 1659 aa21.5■■□□□ 1.03
BRCA1-223ENST00000494123 PKD2Q13563 968 aa21.5■■□□□ 1.03
BRCA1-223ENST00000494123 FBXO31Q5XUX0 539 aaPredicted RBP21.49■■□□□ 1.03
BRCA1-223ENST00000494123 ERVK-7P63135 1459 aa21.47■■□□□ 1.03
BRCA1-223ENST00000494123 SPATA31D1Q6ZQQ2 1576 aa21.46■■□□□ 1.03
BRCA1-223ENST00000494123 TNRQ92752 1358 aa21.44■■□□□ 1.02
BRCA1-223ENST00000494123 SPHKAPQ2M3C7 1700 aa21.43■■□□□ 1.02
BRCA1-223ENST00000494123 FOXD1Q16676 465 aa21.43■■□□□ 1.02
BRCA1-223ENST00000494123 AEBP2Q6ZN18 517 aaPredicted RBP21.42■■□□□ 1.02
BRCA1-223ENST00000494123 NOS1P29475 1434 aa21.42■■□□□ 1.02
BRCA1-223ENST00000494123 SETD1BQ9UPS6 1966 aaKnown RBP21.42■■□□□ 1.02
BRCA1-223ENST00000494123 MYO3AQ8NEV4 1616 aa21.4■■□□□ 1.02
BRCA1-223ENST00000494123 SYNMO15061 1565 aa21.4■■□□□ 1.02
BRCA1-223ENST00000494123 PTPRTO14522 1441 aa21.38■■□□□ 1.01
BRCA1-223ENST00000494123 UHRF1BP1Q6BDS2 1440 aa21.38■■□□□ 1.01
BRCA1-223ENST00000494123 TRPM2O94759 1503 aa21.37■■□□□ 1.01
BRCA1-223ENST00000494123 NLRP1Q9C000 1473 aa21.36■■□□□ 1.01
BRCA1-223ENST00000494123 DHX57Q6P158 1386 aaKnown RBP21.36■■□□□ 1.01
BRCA1-223ENST00000494123 SLC52A1Q9NWF4 448 aa21.34■■□□□ 1.01
BRCA1-223ENST00000494123 PLA2R1Q13018 1463 aa21.34■■□□□ 1.01
BRCA1-223ENST00000494123 UGGT1Q9NYU2 1555 aa21.34■■□□□ 1.01
BRCA1-223ENST00000494123 CEP170BQ9Y4F5 1589 aaPredicted RBP21.33■■□□□ 1
BRCA1-223ENST00000494123 ZNF142P52746 1687 aaPredicted RBP21.33■■□□□ 1
BRCA1-223ENST00000494123 PIK3C2BO00750 1634 aa21.33■■□□□ 1
BRCA1-223ENST00000494123 A2ML1A8K2U0 1454 aa21.32■■□□□ 1
BRCA1-223ENST00000494123 CCDC144AA2RUR9 1427 aa21.31■■□□□ 1
BRCA1-223ENST00000494123 CLTCL1P53675 1640 aa21.31■■□□□ 1
BRCA1-223ENST00000494123 IDI1Q13907 227 aa21.31■■□□□ 1
BRCA1-223ENST00000494123 STAG3Q9UJ98 1225 aa21.31■■□□□ 1
BRCA1-223ENST00000494123 ANKRD30BQ9BXX2 1392 aa21.3■■□□□ 1
BRCA1-223ENST00000494123 CHGAP10645 457 aaKnown RBP21.28■■□□□ 1
BRCA1-223ENST00000494123 KIF1BO60333 1816 aa21.27■■□□□ 1
BRCA1-223ENST00000494123 LMTK3Q96Q04 1460 aa21.27■■□□□ 1
BRCA1-223ENST00000494123 ADGRB3O60242 1522 aa21.27■■□□□ 1
BRCA1-223ENST00000494123 UBR1Q8IWV7 1749 aa21.27■□□□□ 0.99
BRCA1-223ENST00000494123 KDM5AP29375 1690 aaKnown RBP21.26■□□□□ 0.99
BRCA1-223ENST00000494123 TMEM131LA2VDJ0 1609 aa21.23■□□□□ 0.99
BRCA1-223ENST00000494123 THEMISQ8N1K5 641 aaPredicted RBP21.23■□□□□ 0.99
BRCA1-223ENST00000494123 MYO5BQ9ULV0 1848 aa21.22■□□□□ 0.99
BRCA1-223ENST00000494123 CCER1Q8TC90 406 aaPredicted RBP21.22■□□□□ 0.99
BRCA1-223ENST00000494123 HSPA2P54652 639 aa21.19■□□□□ 0.98
BRCA1-223ENST00000494123 ZNF326Q5BKZ1 582 aaKnown RBP21.19■□□□□ 0.98
BRCA1-223ENST00000494123 SIN3AQ96ST3 1273 aa21.15■□□□□ 0.98
BRCA1-223ENST00000494123 TMEM2Q9UHN6 1383 aa21.15■□□□□ 0.98
BRCA1-223ENST00000494123 NEUROD1Q13562 356 aa21.15■□□□□ 0.98
BRCA1-223ENST00000494123 RGL3Q3MIN7 710 aa21.15■□□□□ 0.98
BRCA1-223ENST00000494123 SPATA31E1Q6ZUB1 1445 aa21.15■□□□□ 0.98
BRCA1-223ENST00000494123 SLIT1O75093 1534 aa21.14■□□□□ 0.98
BRCA1-223ENST00000494123 CLSPNQ9HAW4 1339 aa21.14■□□□□ 0.97
BRCA1-223ENST00000494123 NEURL4Q96JN8 1562 aa21.14■□□□□ 0.97
BRCA1-223ENST00000494123 RIMS2Q9UQ26 1411 aa21.12■□□□□ 0.97
BRCA1-223ENST00000494123 HDGFP51858 240 aaKnown RBP21.12■□□□□ 0.97
BRCA1-223ENST00000494123 EID1Q9Y6B2 187 aa21.12■□□□□ 0.97
BRCA1-223ENST00000494123 ARHGAP23Q9P227 1491 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms