RNA–Protein interactions for RNA: ENST00000492996.6

HERC4-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 3,385 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-211ENST00000492996 A2ML1A8K2U0 1454 aa11.02□□□□□ -0.64
HERC4-211ENST00000492996 SYCP2Q9BX26 1530 aa11.02□□□□□ -0.65
HERC4-211ENST00000492996 PTPRKQ15262 1439 aa11.02□□□□□ -0.65
HERC4-211ENST00000492996 CCDC141Q6ZP82 1450 aa11.01□□□□□ -0.65
HERC4-211ENST00000492996 XIRP1Q702N8 1843 aaKnown RBP11□□□□□ -0.65
HERC4-211ENST00000492996 ALKQ9UM73 1620 aa11□□□□□ -0.65
HERC4-211ENST00000492996 RSPH4AQ5TD94 716 aa10.99□□□□□ -0.65
HERC4-211ENST00000492996 MYT1Q01538 1121 aa10.99□□□□□ -0.65
HERC4-211ENST00000492996 TRAPPC8Q9Y2L5 1435 aa10.99□□□□□ -0.65
HERC4-211ENST00000492996 ABCC3O15438 1527 aa10.99□□□□□ -0.65
HERC4-211ENST00000492996 IQGAP1P46940 1657 aa10.98□□□□□ -0.65
HERC4-211ENST00000492996 A2MP01023 1474 aa10.98□□□□□ -0.65
HERC4-211ENST00000492996 LRRC9Q6ZRR7 1453 aa10.98□□□□□ -0.65
HERC4-211ENST00000492996 VPS8Q8N3P4 1428 aa10.97□□□□□ -0.65
HERC4-211ENST00000492996 YEATS2Q9ULM3 1422 aa10.96□□□□□ -0.65
HERC4-211ENST00000492996 SCAPERQ9BY12 1400 aa10.96□□□□□ -0.66
HERC4-211ENST00000492996 CEP152O94986 1710 aa10.96□□□□□ -0.66
HERC4-211ENST00000492996 NCOA3Q9Y6Q9 1424 aa10.95□□□□□ -0.66
HERC4-211ENST00000492996 TRHP20396 242 aaPredicted RBP10.95□□□□□ -0.66
HERC4-211ENST00000492996 SETD1AO15047 1707 aaKnown RBP10.95□□□□□ -0.66
HERC4-211ENST00000492996 IFT172Q9UG01 1749 aa10.93□□□□□ -0.66
HERC4-211ENST00000492996 KNDC1Q76NI1 1749 aa10.93□□□□□ -0.66
HERC4-211ENST00000492996 TTBK1Q5TCY1 1321 aaPredicted RBP10.93□□□□□ -0.66
HERC4-211ENST00000492996 UBTFP17480 764 aaKnown RBP10.91□□□□□ -0.66
HERC4-211ENST00000492996 DHX29Q7Z478 1369 aaKnown RBP10.9□□□□□ -0.66
HERC4-211ENST00000492996 ADGRB3O60242 1522 aa10.9□□□□□ -0.66
HERC4-211ENST00000492996 STRCP1A6NGW2 1772 aa10.9□□□□□ -0.67
HERC4-211ENST00000492996 CDK11AQ9UQ88 783 aaPredicted RBP10.89□□□□□ -0.67
HERC4-211ENST00000492996 CHD2O14647 1828 aaKnown RBP10.88□□□□□ -0.67
HERC4-211ENST00000492996 XRN1Q8IZH2 1706 aaKnown RBP10.88□□□□□ -0.67
HERC4-211ENST00000492996 ROCK1Q13464 1354 aa10.88□□□□□ -0.67
HERC4-211ENST00000492996 PLEKHD1A6NEE1 506 aa10.87□□□□□ -0.67
HERC4-211ENST00000492996 EFCAB2Q5VUJ9 269 aa10.87□□□□□ -0.67
HERC4-211ENST00000492996 MYOM3Q5VTT5 1437 aa10.86□□□□□ -0.67
HERC4-211ENST00000492996 SETBP1Q9Y6X0 1596 aa10.86□□□□□ -0.67
HERC4-211ENST00000492996 TMEM131LA2VDJ0 1609 aa10.86□□□□□ -0.67
HERC4-211ENST00000492996 NOS1P29475 1434 aa10.85□□□□□ -0.67
HERC4-211ENST00000492996 ERVK-7P63135 1459 aa10.85□□□□□ -0.67
HERC4-211ENST00000492996 UHRF1BP1Q6BDS2 1440 aa10.85□□□□□ -0.67
HERC4-211ENST00000492996 NKTRP30414 1462 aaKnown RBP10.84□□□□□ -0.67
HERC4-211ENST00000492996 SHPRHQ149N8 1683 aa10.84□□□□□ -0.67
HERC4-211ENST00000492996 RANGAP1P46060 587 aaPredicted RBP10.82□□□□□ -0.68
HERC4-211ENST00000492996 SPHKAPQ2M3C7 1700 aa10.82□□□□□ -0.68
HERC4-211ENST00000492996 COL22A1Q8NFW1 1626 aaPredicted RBP10.82□□□□□ -0.68
HERC4-211ENST00000492996 ACIN1Q9UKV3 1341 aaKnown RBP10.81□□□□□ -0.68
HERC4-211ENST00000492996 NRXN3Q9Y4C0 1643 aa10.8□□□□□ -0.68
HERC4-211ENST00000492996 E9PCH4 1651 aa10.8□□□□□ -0.68
HERC4-211ENST00000492996 AHDC1Q5TGY3 1603 aaPredicted RBP10.79□□□□□ -0.68
HERC4-211ENST00000492996 NHSL1Q5SYE7 1610 aa10.79□□□□□ -0.68
HERC4-211ENST00000492996 FBXO41Q8TF61 875 aa10.77□□□□□ -0.69
HERC4-211ENST00000492996 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.75□□□□□ -0.69
HERC4-211ENST00000492996 PKD2Q13563 968 aa10.75□□□□□ -0.69
HERC4-211ENST00000492996 DMRT2Q9Y5R5 561 aa10.75□□□□□ -0.69
HERC4-211ENST00000492996 TRPM2O94759 1503 aa10.75□□□□□ -0.69
HERC4-211ENST00000492996 DAPK1P53355 1430 aa10.74□□□□□ -0.69
HERC4-211ENST00000492996 PPLO60437 1756 aa10.74□□□□□ -0.69
HERC4-211ENST00000492996 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.73□□□□□ -0.69
HERC4-211ENST00000492996 ZFYVE9O95405 1425 aa10.73□□□□□ -0.69
HERC4-211ENST00000492996 USP54Q70EL1 1684 aa10.73□□□□□ -0.69
HERC4-211ENST00000492996 KIAA1210Q9ULL0 1709 aa10.73□□□□□ -0.69
HERC4-211ENST00000492996 PIK3R4Q99570 1358 aa10.73□□□□□ -0.69
HERC4-211ENST00000492996 DCCP43146 1447 aa10.72□□□□□ -0.69
HERC4-211ENST00000492996 ABCC5O15440 1437 aa10.72□□□□□ -0.69
HERC4-211ENST00000492996 ZEB1P37275 1124 aaPredicted RBP10.71□□□□□ -0.69
HERC4-211ENST00000492996 FGD6Q6ZV73 1430 aa10.71□□□□□ -0.7
HERC4-211ENST00000492996 CCNB3Q8WWL7 1395 aa10.71□□□□□ -0.7
HERC4-211ENST00000492996 RRBP1Q9P2E9 1410 aaKnown RBP10.7□□□□□ -0.7
HERC4-211ENST00000492996 MARF1Q9Y4F3 1742 aaKnown RBP10.7□□□□□ -0.7
HERC4-211ENST00000492996 ADGRB2O60241 1585 aa10.7□□□□□ -0.7
HERC4-211ENST00000492996 AEBP2Q6ZN18 517 aaPredicted RBP10.69□□□□□ -0.7
HERC4-211ENST00000492996 ZMYM3Q14202 1370 aa10.68□□□□□ -0.7
HERC4-211ENST00000492996 CCER1Q8TC90 406 aaPredicted RBP10.68□□□□□ -0.7
HERC4-211ENST00000492996 NRXN1Q9ULB1 1477 aa10.67□□□□□ -0.7
HERC4-211ENST00000492996 MYO5BQ9ULV0 1848 aa10.66□□□□□ -0.7
HERC4-211ENST00000492996 CRYBG1Q9Y4K1 1723 aa10.65□□□□□ -0.7
HERC4-211ENST00000492996 MST1RQ04912 1400 aa10.65□□□□□ -0.7
HERC4-211ENST00000492996 KIF1BO60333 1816 aa10.65□□□□□ -0.71
HERC4-211ENST00000492996 CDK12Q9NYV4 1490 aaPredicted RBP10.64□□□□□ -0.71
HERC4-211ENST00000492996 LRRC7Q96NW7 1537 aa10.63□□□□□ -0.71
HERC4-211ENST00000492996 COL16A1Q07092 1604 aaPredicted RBP10.63□□□□□ -0.71
HERC4-211ENST00000492996 KIF1AQ12756 1690 aa10.63□□□□□ -0.71
HERC4-211ENST00000492996 NEXMIFQ5QGS0 1516 aa10.63□□□□□ -0.71
HERC4-211ENST00000492996 SCAF11Q99590 1463 aaKnown RBP10.62□□□□□ -0.71
HERC4-211ENST00000492996 APLP2Q06481 763 aa10.62□□□□□ -0.71
HERC4-211ENST00000492996 MED1Q15648 1581 aaPredicted RBP10.61□□□□□ -0.71
HERC4-211ENST00000492996 TNRQ92752 1358 aa10.61□□□□□ -0.71
HERC4-211ENST00000492996 DLC1Q96QB1 1528 aa10.6□□□□□ -0.71
HERC4-211ENST00000492996 NALCNQ8IZF0 1738 aa10.59□□□□□ -0.71
HERC4-211ENST00000492996 CDC42BPGQ6DT37 1551 aa10.59□□□□□ -0.71
HERC4-211ENST00000492996 HNRNPUL2Q1KMD3 747 aaKnown RBP10.59□□□□□ -0.71
HERC4-211ENST00000492996 NPHP4O75161 1426 aaPredicted RBP10.59□□□□□ -0.71
HERC4-211ENST00000492996 RGPD3A6NKT7 1758 aaPredicted RBP10.58□□□□□ -0.72
HERC4-211ENST00000492996 RGPD4Q7Z3J3 1758 aa10.58□□□□□ -0.72
HERC4-211ENST00000492996 TECPR2O15040 1411 aa10.58□□□□□ -0.72
HERC4-211ENST00000492996 RAPGEF3O95398 923 aa10.58□□□□□ -0.72
HERC4-211ENST00000492996 FAM135BQ49AJ0 1406 aa10.58□□□□□ -0.72
HERC4-211ENST00000492996 MTUS2Q5JR59 1369 aa10.58□□□□□ -0.72
HERC4-211ENST00000492996 PLEKHG1Q9ULL1 1385 aa10.57□□□□□ -0.72
HERC4-211ENST00000492996 SPAG9O60271 1321 aaKnown RBP10.57□□□□□ -0.72
HERC4-211ENST00000492996 ABCA3Q99758 1704 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms