RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 UNC13BO14795 1591 aa20.72■□□□□ 0.91
C9orf3-221ENST00000489562 SIGLEC1Q9BZZ2 1709 aa20.71■□□□□ 0.91
C9orf3-221ENST00000489562 KIF3BO15066 747 aa20.68■□□□□ 0.9
C9orf3-221ENST00000489562 PRDM15P57071 1507 aaPredicted RBP20.68■□□□□ 0.9
C9orf3-221ENST00000489562 FAM135AQ9P2D6 1515 aa20.66■□□□□ 0.9
C9orf3-221ENST00000489562 MROH1Q8NDA8 1641 aa20.66■□□□□ 0.9
C9orf3-221ENST00000489562 KDM5DQ9BY66 1539 aa20.65■□□□□ 0.9
C9orf3-221ENST00000489562 ZC3H13Q5T200 1668 aaKnown RBP20.64■□□□□ 0.89
C9orf3-221ENST00000489562 IQGAP3Q86VI3 1631 aa20.64■□□□□ 0.89
C9orf3-221ENST00000489562 KANK1Q14678 1352 aa20.62■□□□□ 0.89
C9orf3-221ENST00000489562 ARID4BQ4LE39 1312 aaPredicted RBP20.62■□□□□ 0.89
C9orf3-221ENST00000489562 VWDEQ8N2E2 1590 aa20.62■□□□□ 0.89
C9orf3-221ENST00000489562 PPP6R1Q9UPN7 881 aa20.61■□□□□ 0.89
C9orf3-221ENST00000489562 NUP155O75694 1391 aa20.59■□□□□ 0.89
C9orf3-221ENST00000489562 CEP152O94986 1710 aa20.58■□□□□ 0.89
C9orf3-221ENST00000489562 GGT6Q6P531 493 aa20.58■□□□□ 0.89
C9orf3-221ENST00000489562 TRIM52Q96A61 297 aa20.58■□□□□ 0.89
C9orf3-221ENST00000489562 TET3O43151 1660 aa20.57■□□□□ 0.88
C9orf3-221ENST00000489562 LMTK2Q8IWU2 1503 aa20.57■□□□□ 0.88
C9orf3-221ENST00000489562 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.56■□□□□ 0.882e-13■■□□□ 12.2
C9orf3-221ENST00000489562 FER1L4A9Z1Z3 1794 aa20.56■□□□□ 0.88
C9orf3-221ENST00000489562 ABCC3O15438 1527 aa20.55■□□□□ 0.88
C9orf3-221ENST00000489562 PZPP20742 1482 aa20.54■□□□□ 0.88
C9orf3-221ENST00000489562 MROH2AA6NES4 1674 aa20.54■□□□□ 0.88
C9orf3-221ENST00000489562 CLTCQ00610 1675 aaKnown RBP20.53■□□□□ 0.88
C9orf3-221ENST00000489562 CAMSAP1Q5T5Y3 1602 aa20.53■□□□□ 0.88
C9orf3-221ENST00000489562 CNTLNQ9NXG0 1405 aa20.53■□□□□ 0.88
C9orf3-221ENST00000489562 ADAMTSL3P82987 1691 aa20.52■□□□□ 0.88
C9orf3-221ENST00000489562 WASHC2CQ9Y4E1 1318 aa20.52■□□□□ 0.87
C9orf3-221ENST00000489562 MLECQ14165 292 aa20.51■□□□□ 0.87
C9orf3-221ENST00000489562 EFCAB6Q5THR3 1501 aa20.51■□□□□ 0.87
C9orf3-221ENST00000489562 ESF1Q9H501 851 aaKnown RBP20.5■□□□□ 0.87
C9orf3-221ENST00000489562 SLC4A1APQ9BWU0 796 aaKnown RBP20.49■□□□□ 0.87
C9orf3-221ENST00000489562 E9PCH4 1651 aa20.48■□□□□ 0.87
C9orf3-221ENST00000489562 MPHOSPH9Q99550 1183 aa20.48■□□□□ 0.87
C9orf3-221ENST00000489562 MADDQ8WXG6 1647 aa20.47■□□□□ 0.87
C9orf3-221ENST00000489562 RPRD2Q5VT52 1461 aaKnown RBP20.47■□□□□ 0.87
C9orf3-221ENST00000489562 ARHGAP31Q2M1Z3 1444 aa20.46■□□□□ 0.87
C9orf3-221ENST00000489562 DHX57Q6P158 1386 aaKnown RBP20.46■□□□□ 0.87
C9orf3-221ENST00000489562 RIMS1Q86UR5 1692 aaKnown RBP20.45■□□□□ 0.86
C9orf3-221ENST00000489562 CFAP65Q6ZU64 1925 aaKnown RBP20.43■□□□□ 0.86
C9orf3-221ENST00000489562 SPHKAPQ2M3C7 1700 aa20.41■□□□□ 0.86
C9orf3-221ENST00000489562 PKD2Q13563 968 aa20.41■□□□□ 0.86
C9orf3-221ENST00000489562 C3P01024 1663 aa20.41■□□□□ 0.86
C9orf3-221ENST00000489562 NPATQ14207 1427 aa20.4■□□□□ 0.86
C9orf3-221ENST00000489562 PREX1Q8TCU6 1659 aa20.39■□□□□ 0.86
C9orf3-221ENST00000489562 ZMYM3Q14202 1370 aa20.39■□□□□ 0.85
C9orf3-221ENST00000489562 CLSPNQ9HAW4 1339 aa20.36■□□□□ 0.85
C9orf3-221ENST00000489562 SPATA31D1Q6ZQQ2 1576 aa20.35■□□□□ 0.85
C9orf3-221ENST00000489562 TRPM2O94759 1503 aa20.35■□□□□ 0.85
C9orf3-221ENST00000489562 PTPRTO14522 1441 aa20.35■□□□□ 0.85
C9orf3-221ENST00000489562 ERVK-7P63135 1459 aa20.34■□□□□ 0.85
C9orf3-221ENST00000489562 CCER1Q8TC90 406 aaPredicted RBP20.33■□□□□ 0.85
C9orf3-221ENST00000489562 NOS1P29475 1434 aa20.33■□□□□ 0.84
C9orf3-221ENST00000489562 ANKRD30BQ9BXX2 1392 aa20.32■□□□□ 0.84
C9orf3-221ENST00000489562 SETD1BQ9UPS6 1966 aaKnown RBP20.32■□□□□ 0.84
C9orf3-221ENST00000489562 PTPRMP28827 1452 aa20.31■□□□□ 0.84
C9orf3-221ENST00000489562 FOXD1Q16676 465 aa20.3■□□□□ 0.84
C9orf3-221ENST00000489562 SYNMO15061 1565 aa20.29■□□□□ 0.84
C9orf3-221ENST00000489562 PIK3C2BO00750 1634 aa20.29■□□□□ 0.84
C9orf3-221ENST00000489562 PLA2R1Q13018 1463 aa20.29■□□□□ 0.84
C9orf3-221ENST00000489562 CCDC144AA2RUR9 1427 aa20.27■□□□□ 0.84
C9orf3-221ENST00000489562 KIF1BO60333 1816 aa20.27■□□□□ 0.84
C9orf3-221ENST00000489562 CLTCL1P53675 1640 aa20.26■□□□□ 0.83
C9orf3-221ENST00000489562 TNRQ92752 1358 aa20.25■□□□□ 0.83
C9orf3-221ENST00000489562 KDM4FA0A1W2PPD8 638 aa20.25■□□□□ 0.83
C9orf3-221ENST00000489562 FBXO31Q5XUX0 539 aaPredicted RBP20.25■□□□□ 0.83
C9orf3-221ENST00000489562 CEBPAP49715 358 aaPredicted RBP20.24■□□□□ 0.83
C9orf3-221ENST00000489562 SLC52A1Q9NWF4 448 aa20.24■□□□□ 0.83
C9orf3-221ENST00000489562 NLRP1Q9C000 1473 aa20.23■□□□□ 0.83
C9orf3-221ENST00000489562 KDM5AP29375 1690 aaKnown RBP20.22■□□□□ 0.83
C9orf3-221ENST00000489562 MYO3AQ8NEV4 1616 aa20.22■□□□□ 0.83
C9orf3-221ENST00000489562 NEURL4Q96JN8 1562 aa20.21■□□□□ 0.83
C9orf3-221ENST00000489562 UGGT1Q9NYU2 1555 aa20.21■□□□□ 0.83
C9orf3-221ENST00000489562 ZNF142P52746 1687 aaPredicted RBP20.19■□□□□ 0.82
C9orf3-221ENST00000489562 PLPPR3Q6T4P5 718 aa20.17■□□□□ 0.82
C9orf3-221ENST00000489562 MYO5BQ9ULV0 1848 aa20.17■□□□□ 0.82
C9orf3-221ENST00000489562 ADGRB3O60242 1522 aa20.17■□□□□ 0.82
C9orf3-221ENST00000489562 TMEM131LA2VDJ0 1609 aa20.16■□□□□ 0.82
C9orf3-221ENST00000489562 IDI1Q13907 227 aa20.15■□□□□ 0.82
C9orf3-221ENST00000489562 UBR1Q8IWV7 1749 aa20.15■□□□□ 0.82
C9orf3-221ENST00000489562 CEP170BQ9Y4F5 1589 aaPredicted RBP20.14■□□□□ 0.81
C9orf3-221ENST00000489562 A2ML1A8K2U0 1454 aa20.14■□□□□ 0.81
C9orf3-221ENST00000489562 SIN3AQ96ST3 1273 aa20.14■□□□□ 0.81
C9orf3-221ENST00000489562 SPATA31E1Q6ZUB1 1445 aa20.13■□□□□ 0.81
C9orf3-221ENST00000489562 UHRF1BP1Q6BDS2 1440 aa20.12■□□□□ 0.81
C9orf3-221ENST00000489562 NEUROD1Q13562 356 aa20.12■□□□□ 0.81
C9orf3-221ENST00000489562 STAG3Q9UJ98 1225 aa20.1■□□□□ 0.81
C9orf3-221ENST00000489562 TIMELESSQ9UNS1 1208 aa20.1■□□□□ 0.81
C9orf3-221ENST00000489562 IFT172Q9UG01 1749 aa20.09■□□□□ 0.81
C9orf3-221ENST00000489562 TONSLQ96HA7 1378 aa20.08■□□□□ 0.81
C9orf3-221ENST00000489562 CHGAP10645 457 aaKnown RBP20.08■□□□□ 0.81
C9orf3-221ENST00000489562 PPLO60437 1756 aa20.08■□□□□ 0.8
C9orf3-221ENST00000489562 RPGRIP1LQ68CZ1 1315 aa20.05■□□□□ 0.8
C9orf3-221ENST00000489562 STAC3Q96MF2 364 aa20.04■□□□□ 0.8
C9orf3-221ENST00000489562 SLIT1O75093 1534 aa20.03■□□□□ 0.8
C9orf3-221ENST00000489562 NEXMIFQ5QGS0 1516 aa20.03■□□□□ 0.8
C9orf3-221ENST00000489562 ZNF326Q5BKZ1 582 aaKnown RBP20.03■□□□□ 0.8
C9orf3-221ENST00000489562 THEMISQ8N1K5 641 aaPredicted RBP20.03■□□□□ 0.8
C9orf3-221ENST00000489562 RGL3Q3MIN7 710 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms