RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 ADAMTSL3P82987 1691 aa29.03■■■□□ 2.24
CCM2-216ENST00000488727 MROH1Q8NDA8 1641 aa29■■■□□ 2.23
CCM2-216ENST00000488727 DEPDC5O75140 1603 aa28.99■■■□□ 2.23
CCM2-216ENST00000488727 GGT6Q6P531 493 aa28.98■■■□□ 2.23
CCM2-216ENST00000488727 MADDQ8WXG6 1647 aa28.97■■■□□ 2.23
CCM2-216ENST00000488727 FER1L4A9Z1Z3 1794 aa28.96■■■□□ 2.23
CCM2-216ENST00000488727 PRDM15P57071 1507 aaPredicted RBP28.95■■■□□ 2.22
CCM2-216ENST00000488727 KDM4FA0A1W2PPD8 638 aa28.94■■■□□ 2.22
CCM2-216ENST00000488727 UNC13BO14795 1591 aa28.92■■■□□ 2.22
CCM2-216ENST00000488727 RIMS1Q86UR5 1692 aaKnown RBP28.9■■■□□ 2.22
CCM2-216ENST00000488727 SETD5Q9C0A6 1442 aa28.89■■■□□ 2.21
CCM2-216ENST00000488727 CLTCQ00610 1675 aaKnown RBP28.89■■■□□ 2.21
CCM2-216ENST00000488727 CEP152O94986 1710 aa28.87■■■□□ 2.21
CCM2-216ENST00000488727 KDM5DQ9BY66 1539 aa28.87■■■□□ 2.21
CCM2-216ENST00000488727 VWDEQ8N2E2 1590 aa28.86■■■□□ 2.21
CCM2-216ENST00000488727 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.86■■■□□ 2.21
CCM2-216ENST00000488727 PPP6R1Q9UPN7 881 aa28.86■■■□□ 2.21
CCM2-216ENST00000488727 FAM135AQ9P2D6 1515 aa28.85■■■□□ 2.21
CCM2-216ENST00000488727 ZC3H13Q5T200 1668 aaKnown RBP28.85■■■□□ 2.21
CCM2-216ENST00000488727 ABCC3O15438 1527 aa28.84■■■□□ 2.21
CCM2-216ENST00000488727 RAB3GAP2Q9H2M9 1393 aa28.82■■■□□ 2.2
CCM2-216ENST00000488727 WASHC2CQ9Y4E1 1318 aa28.82■■■□□ 2.2
CCM2-216ENST00000488727 MROH2AA6NES4 1674 aa28.82■■■□□ 2.2
CCM2-216ENST00000488727 CNTLNQ9NXG0 1405 aa28.81■■■□□ 2.2
CCM2-216ENST00000488727 ESF1Q9H501 851 aaKnown RBP28.8■■■□□ 2.2
CCM2-216ENST00000488727 IQGAP3Q86VI3 1631 aa28.79■■■□□ 2.2
CCM2-216ENST00000488727 KANK1Q14678 1352 aa28.79■■■□□ 2.2
CCM2-216ENST00000488727 PTPRMP28827 1452 aa28.78■■■□□ 2.2
CCM2-216ENST00000488727 C3P01024 1663 aa28.78■■■□□ 2.2
CCM2-216ENST00000488727 CAMSAP1Q5T5Y3 1602 aa28.78■■■□□ 2.2
CCM2-216ENST00000488727 NUP155O75694 1391 aa28.77■■■□□ 2.2
CCM2-216ENST00000488727 LMTK2Q8IWU2 1503 aa28.77■■■□□ 2.2
CCM2-216ENST00000488727 ZMYM3Q14202 1370 aa28.74■■■□□ 2.19
CCM2-216ENST00000488727 TET3O43151 1660 aa28.72■■■□□ 2.19
CCM2-216ENST00000488727 CEBPAP49715 358 aaPredicted RBP28.71■■■□□ 2.19
CCM2-216ENST00000488727 TRIM52Q96A61 297 aa28.71■■■□□ 2.19
CCM2-216ENST00000488727 EFCAB6Q5THR3 1501 aa28.7■■■□□ 2.19
CCM2-216ENST00000488727 PZPP20742 1482 aa28.69■■■□□ 2.18
CCM2-216ENST00000488727 PLPPR3Q6T4P5 718 aa28.68■■■□□ 2.18
CCM2-216ENST00000488727 NPATQ14207 1427 aa28.66■■■□□ 2.18
CCM2-216ENST00000488727 ARHGAP31Q2M1Z3 1444 aa28.66■■■□□ 2.18
CCM2-216ENST00000488727 E9PCH4 1651 aa28.65■■■□□ 2.18
CCM2-216ENST00000488727 CFAP65Q6ZU64 1925 aaKnown RBP28.65■■■□□ 2.18
CCM2-216ENST00000488727 ACIN1Q9UKV3 1341 aaKnown RBP28.61■■■□□ 2.17
CCM2-216ENST00000488727 FBXO31Q5XUX0 539 aaPredicted RBP28.6■■■□□ 2.17
CCM2-216ENST00000488727 PREX1Q8TCU6 1659 aa28.6■■■□□ 2.17
CCM2-216ENST00000488727 RPRD2Q5VT52 1461 aaKnown RBP28.58■■■□□ 2.17
CCM2-216ENST00000488727 SLC4A1APQ9BWU0 796 aaKnown RBP28.58■■■□□ 2.17
CCM2-216ENST00000488727 ERVK-7P63135 1459 aa28.57■■■□□ 2.16
CCM2-216ENST00000488727 SPATA31D1Q6ZQQ2 1576 aa28.57■■■□□ 2.16
CCM2-216ENST00000488727 MPHOSPH9Q99550 1183 aa28.55■■■□□ 2.16
CCM2-216ENST00000488727 PKD2Q13563 968 aa28.53■■■□□ 2.16
CCM2-216ENST00000488727 NOS1P29475 1434 aa28.52■■■□□ 2.16
CCM2-216ENST00000488727 SETD1BQ9UPS6 1966 aaKnown RBP28.52■■■□□ 2.16
CCM2-216ENST00000488727 SYNMO15061 1565 aa28.51■■■□□ 2.15
CCM2-216ENST00000488727 SPHKAPQ2M3C7 1700 aa28.5■■■□□ 2.15
CCM2-216ENST00000488727 TNRQ92752 1358 aa28.49■■■□□ 2.15
CCM2-216ENST00000488727 MYO3AQ8NEV4 1616 aa28.49■■■□□ 2.15
CCM2-216ENST00000488727 FOXD1Q16676 465 aa28.48■■■□□ 2.15
CCM2-216ENST00000488727 CCER1Q8TC90 406 aaPredicted RBP28.47■■■□□ 2.15
CCM2-216ENST00000488727 PTPRTO14522 1441 aa28.44■■■□□ 2.14
CCM2-216ENST00000488727 PLA2R1Q13018 1463 aa28.43■■■□□ 2.14
CCM2-216ENST00000488727 UGGT1Q9NYU2 1555 aa28.42■■■□□ 2.14
CCM2-216ENST00000488727 AEBP2Q6ZN18 517 aaPredicted RBP28.42■■■□□ 2.14
CCM2-216ENST00000488727 TRPM2O94759 1503 aa28.41■■■□□ 2.14
CCM2-216ENST00000488727 ZNF142P52746 1687 aaPredicted RBP28.41■■■□□ 2.14
CCM2-216ENST00000488727 PIK3C2BO00750 1634 aa28.41■■■□□ 2.14
CCM2-216ENST00000488727 UHRF1BP1Q6BDS2 1440 aa28.4■■■□□ 2.14
CCM2-216ENST00000488727 NLRP1Q9C000 1473 aa28.39■■■□□ 2.13
CCM2-216ENST00000488727 CEP170BQ9Y4F5 1589 aaPredicted RBP28.38■■■□□ 2.13
CCM2-216ENST00000488727 LMTK3Q96Q04 1460 aa28.37■■■□□ 2.13
CCM2-216ENST00000488727 DHX57Q6P158 1386 aaKnown RBP28.37■■■□□ 2.13
CCM2-216ENST00000488727 CLTCL1P53675 1640 aa28.35■■■□□ 2.13
CCM2-216ENST00000488727 A2ML1A8K2U0 1454 aa28.35■■■□□ 2.13
CCM2-216ENST00000488727 IDI1Q13907 227 aa28.35■■■□□ 2.13
CCM2-216ENST00000488727 SLC52A1Q9NWF4 448 aa28.33■■■□□ 2.13
CCM2-216ENST00000488727 UBR1Q8IWV7 1749 aa28.32■■■□□ 2.12
CCM2-216ENST00000488727 ANKRD30BQ9BXX2 1392 aa28.31■■■□□ 2.12
CCM2-216ENST00000488727 MYO5BQ9ULV0 1848 aa28.28■■■□□ 2.12
CCM2-216ENST00000488727 KDM5AP29375 1690 aaKnown RBP28.28■■■□□ 2.12
CCM2-216ENST00000488727 ADGRB3O60242 1522 aa28.27■■■□□ 2.12
CCM2-216ENST00000488727 TMEM131LA2VDJ0 1609 aa28.27■■■□□ 2.12
CCM2-216ENST00000488727 CCDC144AA2RUR9 1427 aa28.26■■■□□ 2.11
CCM2-216ENST00000488727 KIF1BO60333 1816 aa28.25■■■□□ 2.11
CCM2-216ENST00000488727 HSPA2P54652 639 aa28.23■■■□□ 2.11
CCM2-216ENST00000488727 STAG3Q9UJ98 1225 aa28.2■■■□□ 2.1
CCM2-216ENST00000488727 CHGAP10645 457 aaKnown RBP28.18■■■□□ 2.1
CCM2-216ENST00000488727 THEMISQ8N1K5 641 aaPredicted RBP28.17■■■□□ 2.1
CCM2-216ENST00000488727 SLIT1O75093 1534 aa28.14■■■□□ 2.1
CCM2-216ENST00000488727 SPATA31E1Q6ZUB1 1445 aa28.14■■■□□ 2.1
CCM2-216ENST00000488727 ARHGAP23Q9P227 1491 aa28.14■■■□□ 2.09
CCM2-216ENST00000488727 TMEM2Q9UHN6 1383 aa28.13■■■□□ 2.09
CCM2-216ENST00000488727 STRCQ7RTU9 1775 aa28.11■■■□□ 2.09
CCM2-216ENST00000488727 NEURL4Q96JN8 1562 aa28.1■■■□□ 2.09
CCM2-216ENST00000488727 SIN3AQ96ST3 1273 aa28.09■■■□□ 2.09
CCM2-216ENST00000488727 ZFYVE9O95405 1425 aa28.09■■■□□ 2.09
CCM2-216ENST00000488727 POLR1AO95602 1720 aaPredicted RBP28.09■■■□□ 2.09
CCM2-216ENST00000488727 NEXMIFQ5QGS0 1516 aa28.06■■■□□ 2.08
CCM2-216ENST00000488727 RIMS2Q9UQ26 1411 aa28.06■■■□□ 2.08
CCM2-216ENST00000488727 ZNF326Q5BKZ1 582 aaKnown RBP28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms