RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 FRMPD1Q5SYB0 1578 aa13.67□□□□□ -0.22
SF3B1-211ENST00000487698 ABCA6Q8N139 1617 aa13.67□□□□□ -0.22
SF3B1-211ENST00000487698 BCORL1Q5H9F3 1711 aa13.66□□□□□ -0.22
SF3B1-211ENST00000487698 PKD2Q13563 968 aa13.66□□□□□ -0.22
SF3B1-211ENST00000487698 VWDEQ8N2E2 1590 aa13.65□□□□□ -0.22
SF3B1-211ENST00000487698 MROH1Q8NDA8 1641 aa13.65□□□□□ -0.22
SF3B1-211ENST00000487698 TEX14Q8IWB6 1497 aa13.65□□□□□ -0.22
SF3B1-211ENST00000487698 FAM69CQ0P6D2 419 aa13.65□□□□□ -0.22
SF3B1-211ENST00000487698 PRDM15P57071 1507 aaPredicted RBP13.65□□□□□ -0.22
SF3B1-211ENST00000487698 ZNF316A6NFI3 1004 aaPredicted RBP13.64□□□□□ -0.23
SF3B1-211ENST00000487698 PPP1R15AO75807 674 aaPredicted RBP13.64□□□□□ -0.23
SF3B1-211ENST00000487698 DHX29Q7Z478 1369 aaKnown RBP13.64□□□□□ -0.23
SF3B1-211ENST00000487698 RNF17Q9BXT8 1623 aaKnown RBP13.64□□□□□ -0.23
SF3B1-211ENST00000487698 ZMYM4Q5VZL5 1548 aa13.63□□□□□ -0.23
SF3B1-211ENST00000487698 DIP2CQ9Y2E4 1556 aa13.62□□□□□ -0.23
SF3B1-211ENST00000487698 A2MP01023 1474 aa13.62□□□□□ -0.23
SF3B1-211ENST00000487698 TET3O43151 1660 aa13.62□□□□□ -0.23
SF3B1-211ENST00000487698 E9PCH4 1651 aa13.61□□□□□ -0.23
SF3B1-211ENST00000487698 ATP10AO60312 1499 aa13.59□□□□□ -0.23
SF3B1-211ENST00000487698 PLA2R1Q13018 1463 aa13.59□□□□□ -0.23
SF3B1-211ENST00000487698 RAPGEF3O95398 923 aa13.58□□□□□ -0.23
SF3B1-211ENST00000487698 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.58□□□□□ -0.239e-22■■□□□ 14.5
SF3B1-211ENST00000487698 MYT1LQ9UL68 1186 aa13.57□□□□□ -0.24
SF3B1-211ENST00000487698 SPHKAPQ2M3C7 1700 aa13.57□□□□□ -0.24
SF3B1-211ENST00000487698 L3MBTL2Q969R5 705 aa13.57□□□□□ -0.24
SF3B1-211ENST00000487698 CEP152O94986 1710 aa13.56□□□□□ -0.24
SF3B1-211ENST00000487698 LMTK2Q8IWU2 1503 aa13.56□□□□□ -0.24
SF3B1-211ENST00000487698 KIF3BO15066 747 aa13.55□□□□□ -0.24
SF3B1-211ENST00000487698 YEATS2Q9ULM3 1422 aa13.54□□□□□ -0.24
SF3B1-211ENST00000487698 EFCAB6Q5THR3 1501 aa13.54□□□□□ -0.24
SF3B1-211ENST00000487698 KANK1Q14678 1352 aa13.54□□□□□ -0.24
SF3B1-211ENST00000487698 TRPM2O94759 1503 aa13.54□□□□□ -0.24
SF3B1-211ENST00000487698 REREQ9P2R6 1566 aa13.53□□□□□ -0.24
SF3B1-211ENST00000487698 CCDC144AA2RUR9 1427 aa13.53□□□□□ -0.24
SF3B1-211ENST00000487698 PTPRTO14522 1441 aa13.52□□□□□ -0.24
SF3B1-211ENST00000487698 COL17A1Q9UMD9 1497 aaPredicted RBP13.51□□□□□ -0.25
SF3B1-211ENST00000487698 ZC3H13Q5T200 1668 aaKnown RBP13.51□□□□□ -0.25
SF3B1-211ENST00000487698 DIEXFQ68CQ4 756 aaKnown RBP13.5□□□□□ -0.25
SF3B1-211ENST00000487698 ABCC3O15438 1527 aa13.49□□□□□ -0.25
SF3B1-211ENST00000487698 CLTCL1P53675 1640 aa13.49□□□□□ -0.25
SF3B1-211ENST00000487698 UHRF1BP1Q6BDS2 1440 aa13.49□□□□□ -0.25
SF3B1-211ENST00000487698 ARHGEF40Q8TER5 1519 aa13.49□□□□□ -0.25
SF3B1-211ENST00000487698 CAMSAP1Q5T5Y3 1602 aa13.49□□□□□ -0.25
SF3B1-211ENST00000487698 NBPF8Q3BBV2 869 aa13.48□□□□□ -0.25
SF3B1-211ENST00000487698 AGLP35573 1532 aa13.47□□□□□ -0.25
SF3B1-211ENST00000487698 NEURL4Q96JN8 1562 aa13.47□□□□□ -0.25
SF3B1-211ENST00000487698 SIGLEC1Q9BZZ2 1709 aa13.47□□□□□ -0.25
SF3B1-211ENST00000487698 SPATA31E1Q6ZUB1 1445 aa13.46□□□□□ -0.25
SF3B1-211ENST00000487698 RALGAPBQ86X10 1494 aa13.44□□□□□ -0.26
SF3B1-211ENST00000487698 NPATQ14207 1427 aa13.44□□□□□ -0.26
SF3B1-211ENST00000487698 KIF1BO60333 1816 aa13.43□□□□□ -0.26
SF3B1-211ENST00000487698 TRPM1Q7Z4N2 1603 aa13.43□□□□□ -0.26
SF3B1-211ENST00000487698 GGT6Q6P531 493 aa13.42□□□□□ -0.26
SF3B1-211ENST00000487698 CFAP65Q6ZU64 1925 aaKnown RBP13.42□□□□□ -0.26
SF3B1-211ENST00000487698 ARHGAP31Q2M1Z3 1444 aa13.42□□□□□ -0.26
SF3B1-211ENST00000487698 UGGT1Q9NYU2 1555 aa13.42□□□□□ -0.26
SF3B1-211ENST00000487698 DNAJC5Q9H3Z4 198 aa13.41□□□□□ -0.26
SF3B1-211ENST00000487698 PRAG1Q86YV5 1406 aa13.4□□□□□ -0.26
SF3B1-211ENST00000487698 MROH2AA6NES4 1674 aa13.4□□□□□ -0.26
SF3B1-211ENST00000487698 POLR1AO95602 1720 aaPredicted RBP13.4□□□□□ -0.26
SF3B1-211ENST00000487698 IFT172Q9UG01 1749 aa13.4□□□□□ -0.26
SF3B1-211ENST00000487698 PIK3C2BO00750 1634 aa13.4□□□□□ -0.26
SF3B1-211ENST00000487698 WASHC2CQ9Y4E1 1318 aa13.39□□□□□ -0.27
SF3B1-211ENST00000487698 CNTLNQ9NXG0 1405 aa13.39□□□□□ -0.27
SF3B1-211ENST00000487698 DCAF11Q8TEB1 546 aa13.39□□□□□ -0.27
SF3B1-211ENST00000487698 MADDQ8WXG6 1647 aa13.38□□□□□ -0.27
SF3B1-211ENST00000487698 NOS1P29475 1434 aa13.38□□□□□ -0.27
SF3B1-211ENST00000487698 SYNMO15061 1565 aa13.38□□□□□ -0.27
SF3B1-211ENST00000487698 LAMC1P11047 1609 aa13.38□□□□□ -0.27
SF3B1-211ENST00000487698 ADGRB3O60242 1522 aa13.38□□□□□ -0.27
SF3B1-211ENST00000487698 PREX1Q8TCU6 1659 aa13.38□□□□□ -0.27
SF3B1-211ENST00000487698 HSPA5P11021 654 aaKnown RBP13.37□□□□□ -0.27
SF3B1-211ENST00000487698 EIF4G2P78344 907 aaKnown RBP eCLIP13.37□□□□□ -0.27
SF3B1-211ENST00000487698 HIRIP3Q9BW71 556 aaPredicted RBP13.37□□□□□ -0.27
SF3B1-211ENST00000487698 CLTCQ00610 1675 aaKnown RBP13.36□□□□□ -0.27
SF3B1-211ENST00000487698 RGL3Q3MIN7 710 aa13.36□□□□□ -0.27
SF3B1-211ENST00000487698 ZNF326Q5BKZ1 582 aaKnown RBP13.35□□□□□ -0.27
SF3B1-211ENST00000487698 KDM2AQ9Y2K7 1162 aa13.35□□□□□ -0.27
SF3B1-211ENST00000487698 GPRASP1Q5JY77 1395 aa13.34□□□□□ -0.27
SF3B1-211ENST00000487698 PPP6R1Q9UPN7 881 aa13.34□□□□□ -0.27
SF3B1-211ENST00000487698 KIAA1210Q9ULL0 1709 aa13.34□□□□□ -0.27
SF3B1-211ENST00000487698 PPLO60437 1756 aa13.33□□□□□ -0.27
SF3B1-211ENST00000487698 MYOM2P54296 1465 aa13.33□□□□□ -0.27
SF3B1-211ENST00000487698 USP47Q96K76 1375 aa13.33□□□□□ -0.28
SF3B1-211ENST00000487698 STAC3Q96MF2 364 aa13.32□□□□□ -0.28
SF3B1-211ENST00000487698 NRXN1Q9ULB1 1477 aa13.3□□□□□ -0.28
SF3B1-211ENST00000487698 ROCK2O75116 1388 aaKnown RBP13.3□□□□□ -0.28
SF3B1-211ENST00000487698 ERVK-7P63135 1459 aa13.3□□□□□ -0.28
SF3B1-211ENST00000487698 TRHP20396 242 aaPredicted RBP13.3□□□□□ -0.28
SF3B1-211ENST00000487698 MYO5BQ9ULV0 1848 aa13.29□□□□□ -0.28
SF3B1-211ENST00000487698 WASHC2AQ641Q2 1341 aa13.29□□□□□ -0.28
SF3B1-211ENST00000487698 IQGAP1P46940 1657 aa13.29□□□□□ -0.28
SF3B1-211ENST00000487698 MIER1Q8N108 512 aa13.29□□□□□ -0.28
SF3B1-211ENST00000487698 SPATA31D1Q6ZQQ2 1576 aa13.29□□□□□ -0.28
SF3B1-211ENST00000487698 CARD11Q9BXL7 1154 aa13.28□□□□□ -0.28
SF3B1-211ENST00000487698 TMEM131LA2VDJ0 1609 aa13.28□□□□□ -0.28
SF3B1-211ENST00000487698 DDX10Q13206 875 aaKnown RBP13.27□□□□□ -0.28
SF3B1-211ENST00000487698 CCDC7Q96M83 1385 aa13.27□□□□□ -0.29
SF3B1-211ENST00000487698 NBPF1Q3BBV0 1214 aa13.26□□□□□ -0.29
SF3B1-211ENST00000487698 NEXMIFQ5QGS0 1516 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms