RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 HECW2Q9P2P5 1572 aa37.64■■■■□ 3.62
SHOX2-204ENST00000483851 FAM69CQ0P6D2 419 aa37.62■■■■□ 3.61
SHOX2-204ENST00000483851 MYT1LQ9UL68 1186 aa37.58■■■■□ 3.61
SHOX2-204ENST00000483851 TEX14Q8IWB6 1497 aa37.57■■■■□ 3.6
SHOX2-204ENST00000483851 RICTORQ6R327 1708 aa37.54■■■■□ 3.6
SHOX2-204ENST00000483851 GRWD1Q9BQ67 446 aaKnown RBP eCLIP37.53■■■■□ 3.6
SHOX2-204ENST00000483851 A2MP01023 1474 aa37.52■■■■□ 3.6
SHOX2-204ENST00000483851 L3MBTL2Q969R5 705 aa37.52■■■■□ 3.6
SHOX2-204ENST00000483851 VWDEQ8N2E2 1590 aa37.5■■■■□ 3.59
SHOX2-204ENST00000483851 ATP10AO60312 1499 aa37.5■■■■□ 3.59
SHOX2-204ENST00000483851 PPRC1Q5VV67 1664 aaKnown RBP37.49■■■■□ 3.59
SHOX2-204ENST00000483851 PRDM15P57071 1507 aaPredicted RBP37.48■■■■□ 3.59
SHOX2-204ENST00000483851 KANK1Q14678 1352 aa37.48■■■■□ 3.59
SHOX2-204ENST00000483851 BCORL1Q5H9F3 1711 aa37.46■■■■□ 3.59
SHOX2-204ENST00000483851 KIF13AQ9H1H9 1805 aa37.44■■■■□ 3.58
SHOX2-204ENST00000483851 ABCA6Q8N139 1617 aa37.43■■■■□ 3.58
SHOX2-204ENST00000483851 RNF17Q9BXT8 1623 aaKnown RBP37.43■■■■□ 3.58
SHOX2-204ENST00000483851 TET3O43151 1660 aa37.42■■■■□ 3.58
SHOX2-204ENST00000483851 KIF3BO15066 747 aa37.42■■■■□ 3.58
SHOX2-204ENST00000483851 MROH1Q8NDA8 1641 aa37.41■■■■□ 3.58
SHOX2-204ENST00000483851 ZMYM4Q5VZL5 1548 aa37.41■■■■□ 3.58
SHOX2-204ENST00000483851 RAPGEF3O95398 923 aa37.41■■■■□ 3.58
SHOX2-204ENST00000483851 FRMPD1Q5SYB0 1578 aa37.39■■■■□ 3.58
SHOX2-204ENST00000483851 CCDC144AA2RUR9 1427 aa37.38■■■■□ 3.57
SHOX2-204ENST00000483851 TSPOAP1O95153 1857 aa37.38■■■■□ 3.57
SHOX2-204ENST00000483851 PLA2R1Q13018 1463 aa37.37■■■■□ 3.57
SHOX2-204ENST00000483851 DIP2CQ9Y2E4 1556 aa37.36■■■■□ 3.57
SHOX2-204ENST00000483851 E9PCH4 1651 aa37.35■■■■□ 3.57
SHOX2-204ENST00000483851 LMTK2Q8IWU2 1503 aa37.33■■■■□ 3.57
SHOX2-204ENST00000483851 PTPRTO14522 1441 aa37.27■■■■□ 3.56
SHOX2-204ENST00000483851 UHRF1BP1Q6BDS2 1440 aa37.25■■■■□ 3.55
SHOX2-204ENST00000483851 TRPM2O94759 1503 aa37.25■■■■□ 3.55
SHOX2-204ENST00000483851 SPHKAPQ2M3C7 1700 aa37.23■■■■□ 3.55
SHOX2-204ENST00000483851 EFCAB6Q5THR3 1501 aa37.22■■■■□ 3.55
SHOX2-204ENST00000483851 NBPF8Q3BBV2 869 aa37.2■■■■□ 3.55
SHOX2-204ENST00000483851 YEATS2Q9ULM3 1422 aa37.19■■■■□ 3.54
SHOX2-204ENST00000483851 REREQ9P2R6 1566 aa37.18■■■■□ 3.54
SHOX2-204ENST00000483851 CEP152O94986 1710 aa37.14■■■■□ 3.54
SHOX2-204ENST00000483851 EIF4G2P78344 907 aaKnown RBP eCLIP37.11■■■■□ 3.537e-7■■□□□ 12.9
SHOX2-204ENST00000483851 NEURL4Q96JN8 1562 aa37.11■■■■□ 3.53
SHOX2-204ENST00000483851 ZC3H13Q5T200 1668 aaKnown RBP37.09■■■■□ 3.53
SHOX2-204ENST00000483851 ABCC3O15438 1527 aa37.08■■■■□ 3.53
SHOX2-204ENST00000483851 GGT6Q6P531 493 aa37.07■■■■□ 3.52
SHOX2-204ENST00000483851 RALGAPBQ86X10 1494 aa37.07■■■■□ 3.52
SHOX2-204ENST00000483851 SPATA31E1Q6ZUB1 1445 aa37.06■■■■□ 3.52
SHOX2-204ENST00000483851 AGLP35573 1532 aa37.06■■■■□ 3.52
SHOX2-204ENST00000483851 DCAF11Q8TEB1 546 aa37.05■■■■□ 3.52
SHOX2-204ENST00000483851 CLTCL1P53675 1640 aa37.04■■■■□ 3.52
SHOX2-204ENST00000483851 STAC3Q96MF2 364 aa37.03■■■■□ 3.52
SHOX2-204ENST00000483851 WASHC2CQ9Y4E1 1318 aa37.02■■■■□ 3.52
SHOX2-204ENST00000483851 COL17A1Q9UMD9 1497 aaPredicted RBP37.01■■■■□ 3.51
SHOX2-204ENST00000483851 HSPA5P11021 654 aaKnown RBP37.01■■■■□ 3.51
SHOX2-204ENST00000483851 CAMSAP1Q5T5Y3 1602 aa37■■■■□ 3.51
SHOX2-204ENST00000483851 ARHGAP31Q2M1Z3 1444 aa36.98■■■■□ 3.51
SHOX2-204ENST00000483851 NPATQ14207 1427 aa36.97■■■■□ 3.51
SHOX2-204ENST00000483851 PRAG1Q86YV5 1406 aa36.97■■■■□ 3.51
SHOX2-204ENST00000483851 ARHGEF40Q8TER5 1519 aa36.97■■■■□ 3.51
SHOX2-204ENST00000483851 MIER1Q8N108 512 aa36.96■■■■□ 3.51
SHOX2-204ENST00000483851 PPP6R1Q9UPN7 881 aa36.95■■■■□ 3.51
SHOX2-204ENST00000483851 RGL3Q3MIN7 710 aa36.94■■■■□ 3.5
SHOX2-204ENST00000483851 CNTLNQ9NXG0 1405 aa36.94■■■■□ 3.5
SHOX2-204ENST00000483851 KDM2AQ9Y2K7 1162 aa36.94■■■■□ 3.5
SHOX2-204ENST00000483851 ZNF326Q5BKZ1 582 aaKnown RBP36.93■■■■□ 3.5
SHOX2-204ENST00000483851 HIRIP3Q9BW71 556 aaPredicted RBP36.93■■■■□ 3.5
SHOX2-204ENST00000483851 KIF1BO60333 1816 aa36.91■■■■□ 3.5
SHOX2-204ENST00000483851 TRPM1Q7Z4N2 1603 aa36.9■■■■□ 3.5
SHOX2-204ENST00000483851 NOS1P29475 1434 aa36.86■■■■□ 3.49
SHOX2-204ENST00000483851 LAMC1P11047 1609 aa36.84■■■■□ 3.49
SHOX2-204ENST00000483851 USP47Q96K76 1375 aa36.83■■■■□ 3.49
SHOX2-204ENST00000483851 SCAF1Q9H7N4 1312 aaKnown RBP36.83■■■■□ 3.49
SHOX2-204ENST00000483851 GPRASP1Q5JY77 1395 aa36.82■■■■□ 3.49
SHOX2-204ENST00000483851 POLR1AO95602 1720 aaPredicted RBP36.8■■■■□ 3.48
SHOX2-204ENST00000483851 DDX10Q13206 875 aaKnown RBP36.79■■■■□ 3.48
SHOX2-204ENST00000483851 CARD11Q9BXL7 1154 aa36.79■■■■□ 3.48
SHOX2-204ENST00000483851 UGGT1Q9NYU2 1555 aa36.79■■■■□ 3.48
SHOX2-204ENST00000483851 CENPBP07199 599 aaPredicted RBP36.79■■■■□ 3.48
SHOX2-204ENST00000483851 ROCK2O75116 1388 aaKnown RBP36.79■■■■□ 3.48
SHOX2-204ENST00000483851 SIGLEC1Q9BZZ2 1709 aa36.77■■■■□ 3.48
SHOX2-204ENST00000483851 ADGRB3O60242 1522 aa36.77■■■■□ 3.48
SHOX2-204ENST00000483851 PIK3C2BO00750 1634 aa36.76■■■■□ 3.48
SHOX2-204ENST00000483851 MADDQ8WXG6 1647 aa36.76■■■■□ 3.48
SHOX2-204ENST00000483851 MYOM2P54296 1465 aa36.74■■■■□ 3.47
SHOX2-204ENST00000483851 CFAP65Q6ZU64 1925 aaKnown RBP36.73■■■■□ 3.47
SHOX2-204ENST00000483851 WASHC2AQ641Q2 1341 aa36.73■■■■□ 3.47
SHOX2-204ENST00000483851 IFT172Q9UG01 1749 aa36.72■■■■□ 3.47
SHOX2-204ENST00000483851 SYNMO15061 1565 aa36.71■■■■□ 3.47
SHOX2-204ENST00000483851 ARID4BQ4LE39 1312 aaPredicted RBP36.69■■■■□ 3.46
SHOX2-204ENST00000483851 MROH2AA6NES4 1674 aa36.69■■■■□ 3.46
SHOX2-204ENST00000483851 PREX1Q8TCU6 1659 aa36.69■■■■□ 3.46
SHOX2-204ENST00000483851 KIAA1210Q9ULL0 1709 aa36.69■■■■□ 3.46
SHOX2-204ENST00000483851 CCDC7Q96M83 1385 aa36.69■■■■□ 3.46
SHOX2-204ENST00000483851 SLC52A1Q9NWF4 448 aa36.67■■■■□ 3.46
SHOX2-204ENST00000483851 RPGRIP1LQ68CZ1 1315 aa36.65■■■■□ 3.46
SHOX2-204ENST00000483851 TRHP20396 242 aaPredicted RBP36.65■■■■□ 3.46
SHOX2-204ENST00000483851 CLTCQ00610 1675 aaKnown RBP36.62■■■■□ 3.45
SHOX2-204ENST00000483851 NRXN1Q9ULB1 1477 aa36.61■■■■□ 3.45
SHOX2-204ENST00000483851 NBPF1Q3BBV0 1214 aa36.6■■■■□ 3.45
SHOX2-204ENST00000483851 C11orf95C9JLR9 678 aaPredicted RBP36.58■■■■□ 3.45
SHOX2-204ENST00000483851 PPLO60437 1756 aa36.58■■■■□ 3.45
SHOX2-204ENST00000483851 ERVK-7P63135 1459 aa36.57■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms